Wall clock time and date at job start Wed Apr 1 2020 03:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35908 * 117.00149 * 2 1 4 4 C 1.38740 * 119.95085 * 359.97438 * 3 2 1 5 5 C 1.38730 * 120.18785 * 179.97438 * 4 3 2 6 6 O 1.35902 * 119.95130 * 180.02562 * 5 4 3 7 7 C 1.42902 * 117.00213 * 0.02676 * 6 5 4 8 8 C 1.38511 * 120.09620 * 0.02755 * 5 4 3 9 9 C 1.39521 * 119.90315 * 359.97438 * 8 5 4 10 10 C 1.47842 * 120.09637 * 180.02562 * 9 8 5 11 11 O 1.21571 * 119.99679 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00284 * 180.02562 * 10 9 8 13 13 C 1.40086 * 119.99840 * 180.02562 * 12 10 9 14 14 C 1.40423 * 125.97676 * 0.27046 * 13 12 10 15 15 C 1.35232 * 107.86638 * 180.14811 * 14 13 12 16 16 C 1.50703 * 126.06766 * 179.90771 * 15 14 13 17 17 N 1.34973 * 107.86541 * 359.64383 * 15 14 13 18 18 C 1.46498 * 125.97410 * 180.22663 * 17 15 14 19 19 C 1.50702 * 109.47036 * 90.00121 * 18 17 15 20 20 H 1.08000 * 120.00135 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99820 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00006 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 120.00126 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46825 * 90.00061 * 23 21 19 25 25 H 1.48500 * 109.47200 * 209.99896 * 23 21 19 26 26 H 1.48503 * 109.46881 * 330.00202 * 23 21 19 27 27 N 1.31239 * 125.97241 * 180.02562 * 13 12 10 28 28 C 1.38506 * 119.95395 * 180.27917 * 3 2 1 29 29 H 1.08998 * 109.47203 * 59.99735 * 1 2 3 30 30 H 1.09001 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47336 * 299.99744 * 1 2 3 32 32 H 1.07999 * 119.90082 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.46760 * 299.99824 * 7 6 5 34 34 H 1.08996 * 109.47257 * 59.99649 * 7 6 5 35 35 H 1.09001 * 109.47509 * 180.02562 * 7 6 5 36 36 H 1.07997 * 120.04968 * 179.97438 * 8 5 4 37 37 H 0.96999 * 120.00076 * 359.97438 * 12 10 9 38 38 H 1.08000 * 126.06461 * 0.04410 * 14 13 12 39 39 H 1.09002 * 109.47152 * 269.68932 * 16 15 14 40 40 H 1.09001 * 109.46980 * 149.69032 * 16 15 14 41 41 H 1.09004 * 109.47113 * 29.69013 * 16 15 14 42 42 H 1.09005 * 109.47009 * 210.00038 * 18 17 15 43 43 H 1.09004 * 109.46994 * 330.00070 * 18 17 15 44 44 H 0.96998 * 120.00025 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.04620 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3739 -0.0005 5 6 1.9142 3.6125 0.0000 6 8 1.1683 4.7486 0.0000 7 6 -0.2521 4.5923 0.0000 8 6 3.2969 3.6930 0.0005 9 6 4.0616 2.5260 0.0010 10 6 5.5378 2.6070 0.0021 11 8 6.0870 3.6916 0.0021 12 7 6.2746 1.4785 0.0021 13 6 7.6734 1.5553 0.0036 14 6 8.4348 2.7352 0.0107 15 6 9.7412 2.3859 0.0066 16 6 10.9130 3.3336 0.0096 17 7 9.8095 1.0379 0.0052 18 6 11.0370 0.2384 0.0056 19 6 11.4565 -0.0372 1.4266 20 1 10.8678 0.3452 2.2473 21 6 12.5919 -0.7777 1.6789 22 7 12.9583 -1.0179 2.9189 23 14 13.6098 -1.4399 0.2593 24 1 14.6441 -0.4425 -0.1155 25 1 14.2686 -2.7056 0.6707 26 1 12.7256 -1.6979 -0.9056 27 7 8.5013 0.5370 0.0033 28 6 3.4292 1.2823 -0.0058 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2111 2.3146 -0.0005 33 1 -0.5570 4.0418 -0.8900 34 1 -0.5570 4.0417 0.8899 35 1 -0.7258 5.5740 -0.0004 36 1 3.7825 4.6577 0.0005 37 1 5.8364 0.6131 0.0017 38 1 8.0459 3.7427 0.0166 39 1 11.1972 3.5632 -1.0174 40 1 11.7543 2.8695 0.5243 41 1 10.6349 4.2536 0.5240 42 1 10.8563 -0.7051 -0.5094 43 1 11.8277 0.7865 -0.5068 44 1 13.7568 -1.5392 3.0964 45 1 4.0174 0.3765 -0.0108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271154709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:23 Heat of formation + Delta-G solvation = 8.060791 kcal Electronic energy + Delta-G solvation = -28880.485424 eV Core-core repulsion = 24673.466570 eV Total energy + Delta-G solvation = -4207.018854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17777 -40.67278 -39.36892 -39.25096 -36.66249 -34.98808 -33.34028 -31.77120 -31.18660 -30.75849 -30.62419 -28.51199 -27.21938 -26.96881 -26.40276 -24.35918 -22.85918 -22.40896 -21.21143 -19.84432 -19.80514 -18.59714 -17.45680 -17.10591 -16.68783 -16.52144 -16.43272 -16.29858 -15.92762 -15.82784 -15.29840 -15.21539 -15.14425 -14.46259 -14.23206 -13.80079 -13.61421 -13.23874 -13.03690 -12.82431 -12.64202 -12.56115 -12.39237 -12.28846 -12.06006 -12.00041 -11.82629 -11.62418 -11.54817 -11.21421 -10.96880 -10.80262 -10.57005 -10.05601 -9.95822 -9.71874 -9.57210 -9.16322 -8.77746 -8.42446 -8.00217 -7.49283 -6.25363 -4.28629 0.42661 1.06155 2.38660 2.49868 2.78447 2.82040 2.92165 3.15655 3.24056 3.24753 3.38463 3.75128 3.79816 4.22371 4.27924 4.37163 4.53184 4.65588 4.67696 4.68960 4.70286 4.78611 4.92407 4.98173 5.01948 5.02688 5.15528 5.37096 5.62773 5.73528 5.78080 5.87237 5.93730 6.03950 6.05820 6.18310 6.37544 6.45611 6.54956 6.60222 6.69759 6.75905 7.01750 7.29505 7.35990 7.55428 7.85739 8.15227 8.31991 8.55959 8.80417 9.29676 10.87057 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002109 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.289692 B =13271.322703 C =14335.809737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.161 3.839 4 C -0.275 4.275 5 C 0.159 3.841 6 O -0.309 6.309 7 C 0.026 3.974 8 C -0.125 4.125 9 C -0.047 4.047 10 C 0.567 3.433 11 O -0.504 6.504 12 N -0.623 5.623 13 C 0.267 3.733 14 C -0.285 4.285 15 C 0.095 3.905 16 C -0.091 4.091 17 N -0.315 5.315 18 C 0.231 3.769 19 C -0.541 4.541 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.886 5.886 23 Si 0.872 3.128 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.263 1.263 27 N -0.315 5.315 28 C -0.155 4.155 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.412 0.588 38 H 0.162 0.838 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.269 0.731 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.114 7.756 -8.071 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.115 3.885 4 C -0.295 4.295 5 C 0.114 3.886 6 O -0.222 6.222 7 C -0.069 4.069 8 C -0.144 4.144 9 C -0.051 4.051 10 C 0.353 3.647 11 O -0.378 6.378 12 N -0.270 5.270 13 C 0.014 3.986 14 C -0.316 4.316 15 C -0.036 4.036 16 C -0.149 4.149 17 N -0.098 5.098 18 C 0.112 3.888 19 C -0.579 4.579 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.523 5.523 23 Si 0.698 3.302 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.188 1.188 27 N -0.145 5.145 28 C -0.175 4.175 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.168 0.832 37 H 0.249 0.751 38 H 0.180 0.820 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.238 7.097 -7.953 28.320 hybrid contribution -0.317 -0.308 -0.462 0.640 sum -26.554 6.789 -8.415 28.671 Atomic orbital electron populations 1.23108 0.78152 1.04367 1.01295 1.86134 1.21565 1.26244 1.88313 1.18482 0.91630 0.83879 0.94472 1.21424 1.00767 0.91926 1.15382 1.18507 0.90801 0.84711 0.94625 1.86132 1.19058 1.28712 1.88312 1.23107 0.78329 1.04189 1.01309 1.20347 0.89940 0.99502 1.04647 1.19255 0.92146 0.92654 1.01017 1.17925 0.86070 0.83676 0.77022 1.90740 1.72041 1.27551 1.47448 1.42302 1.02853 1.09855 1.72025 1.18910 0.83301 0.93335 1.03013 1.21281 0.90231 0.99336 1.20765 1.21069 0.96511 0.85368 1.00619 1.20412 0.94917 0.97082 1.02496 1.48530 1.04399 1.03857 1.52968 1.20007 0.77695 0.91336 0.99735 1.21182 1.10850 1.35529 0.90377 0.90067 1.24813 0.96823 0.95118 0.95792 1.69873 1.25044 1.38726 1.18637 0.86906 0.80996 0.79418 0.82848 1.19609 1.20512 1.18784 1.77273 0.87939 1.20004 1.29303 1.20489 0.91783 0.97764 1.07434 0.92586 0.87823 0.92559 0.84387 0.92591 0.92555 0.87840 0.83218 0.75125 0.82025 0.91037 0.89818 0.90295 0.93171 0.93603 0.92123 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.77 10.49 -19.45 -0.20 -2.98 16 3 C 0.16 1.58 6.68 -39.30 -0.26 1.31 16 4 C -0.28 -2.35 8.02 -39.21 -0.31 -2.67 16 5 C 0.16 1.60 6.68 -39.30 -0.26 1.34 16 6 O -0.31 -2.82 10.49 -19.43 -0.20 -3.02 16 7 C 0.03 0.12 9.81 101.05 0.99 1.11 16 8 C -0.12 -1.47 9.53 -39.00 -0.37 -1.84 16 9 C -0.05 -0.58 5.87 -105.01 -0.62 -1.20 16 10 C 0.57 8.75 7.74 -12.33 -0.10 8.65 16 11 O -0.50 -9.07 13.47 5.30 0.07 -9.00 16 12 N -0.62 -10.03 5.40 -11.99 -0.06 -10.09 16 13 C 0.27 5.46 8.11 -154.44 -1.25 4.21 16 14 C -0.29 -5.85 9.52 -39.83 -0.38 -6.23 16 15 C 0.10 1.98 6.92 -82.28 -0.57 1.41 16 16 C -0.09 -1.51 9.89 36.01 0.36 -1.16 16 17 N -0.32 -7.35 3.59 -58.32 -0.21 -7.56 16 18 C 0.23 5.57 4.88 -5.19 -0.03 5.55 16 19 C -0.54 -15.17 9.94 -34.44 -0.34 -15.51 16 20 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 21 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 22 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 23 Si 0.87 20.13 27.47 -169.99 -4.67 15.47 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 27 N -0.31 -7.22 12.59 31.43 0.40 -6.82 16 28 C -0.16 -1.67 9.48 -39.00 -0.37 -2.04 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.14 0.78 4.49 -52.49 -0.24 0.54 16 33 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 34 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.15 1.81 7.64 -52.49 -0.40 1.41 16 37 H 0.41 5.46 6.85 -40.82 -0.28 5.18 16 38 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.22 7.20 -51.93 -0.37 0.84 16 43 H 0.05 1.01 7.08 -51.93 -0.37 0.64 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.14 1.33 6.40 -52.49 -0.34 0.99 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -35.09 379.38 -6.59 -41.68 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.57 Total: 6.02 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.62 Total: -3.85 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.90 Total: -50.04 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.34 Total: -15.00 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.09 -6.59 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271154709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.742 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds