Wall clock time and date at job start Wed Apr 1 2020 03:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35908 * 117.00149 * 2 1 4 4 C 1.38740 * 119.95085 * 359.97438 * 3 2 1 5 5 C 1.38730 * 120.18785 * 179.97438 * 4 3 2 6 6 O 1.35902 * 119.95130 * 180.02562 * 5 4 3 7 7 C 1.42902 * 117.00213 * 0.02676 * 6 5 4 8 8 C 1.38511 * 120.09620 * 0.02755 * 5 4 3 9 9 C 1.39521 * 119.90315 * 359.97438 * 8 5 4 10 10 C 1.47842 * 120.09637 * 180.02562 * 9 8 5 11 11 O 1.21571 * 119.99679 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00284 * 180.02562 * 10 9 8 13 13 C 1.40086 * 119.99840 * 180.02562 * 12 10 9 14 14 C 1.40423 * 125.97676 * 0.27046 * 13 12 10 15 15 C 1.35232 * 107.86638 * 180.14811 * 14 13 12 16 16 C 1.50703 * 126.06766 * 179.90771 * 15 14 13 17 17 N 1.34973 * 107.86541 * 359.64383 * 15 14 13 18 18 C 1.46498 * 125.97410 * 180.22663 * 17 15 14 19 19 C 1.50702 * 109.47036 * 90.00121 * 18 17 15 20 20 H 1.08000 * 120.00135 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99820 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00006 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 120.00126 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46825 * 90.00061 * 23 21 19 25 25 H 1.48500 * 109.47200 * 209.99896 * 23 21 19 26 26 H 1.48503 * 109.46881 * 330.00202 * 23 21 19 27 27 N 1.31239 * 125.97241 * 180.02562 * 13 12 10 28 28 C 1.38506 * 119.95395 * 180.27917 * 3 2 1 29 29 H 1.08998 * 109.47203 * 59.99735 * 1 2 3 30 30 H 1.09001 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47336 * 299.99744 * 1 2 3 32 32 H 1.07999 * 119.90082 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.46760 * 299.99824 * 7 6 5 34 34 H 1.08996 * 109.47257 * 59.99649 * 7 6 5 35 35 H 1.09001 * 109.47509 * 180.02562 * 7 6 5 36 36 H 1.07997 * 120.04968 * 179.97438 * 8 5 4 37 37 H 0.96999 * 120.00076 * 359.97438 * 12 10 9 38 38 H 1.08000 * 126.06461 * 0.04410 * 14 13 12 39 39 H 1.09002 * 109.47152 * 269.68932 * 16 15 14 40 40 H 1.09001 * 109.46980 * 149.69032 * 16 15 14 41 41 H 1.09004 * 109.47113 * 29.69013 * 16 15 14 42 42 H 1.09005 * 109.47009 * 210.00038 * 18 17 15 43 43 H 1.09004 * 109.46994 * 330.00070 * 18 17 15 44 44 H 0.96998 * 120.00025 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.04620 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3739 -0.0005 5 6 1.9142 3.6125 0.0000 6 8 1.1683 4.7486 0.0000 7 6 -0.2521 4.5923 0.0000 8 6 3.2969 3.6930 0.0005 9 6 4.0616 2.5260 0.0010 10 6 5.5378 2.6070 0.0021 11 8 6.0870 3.6916 0.0021 12 7 6.2746 1.4785 0.0021 13 6 7.6734 1.5553 0.0036 14 6 8.4348 2.7352 0.0107 15 6 9.7412 2.3859 0.0066 16 6 10.9130 3.3336 0.0096 17 7 9.8095 1.0379 0.0052 18 6 11.0370 0.2384 0.0056 19 6 11.4565 -0.0372 1.4266 20 1 10.8678 0.3452 2.2473 21 6 12.5919 -0.7777 1.6789 22 7 12.9583 -1.0179 2.9189 23 14 13.6098 -1.4399 0.2593 24 1 14.6441 -0.4425 -0.1155 25 1 14.2686 -2.7056 0.6707 26 1 12.7256 -1.6979 -0.9056 27 7 8.5013 0.5370 0.0033 28 6 3.4292 1.2823 -0.0058 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2111 2.3146 -0.0005 33 1 -0.5570 4.0418 -0.8900 34 1 -0.5570 4.0417 0.8899 35 1 -0.7258 5.5740 -0.0004 36 1 3.7825 4.6577 0.0005 37 1 5.8364 0.6131 0.0017 38 1 8.0459 3.7427 0.0166 39 1 11.1972 3.5632 -1.0174 40 1 11.7543 2.8695 0.5243 41 1 10.6349 4.2536 0.5240 42 1 10.8563 -0.7051 -0.5094 43 1 11.8277 0.7865 -0.5068 44 1 13.7568 -1.5392 3.0964 45 1 4.0174 0.3765 -0.0108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271154709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:22 Heat of formation + Delta-G solvation = -16.231741 kcal Electronic energy + Delta-G solvation = -28881.538827 eV Core-core repulsion = 24673.466570 eV Total energy + Delta-G solvation = -4208.072257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.45194 -41.75738 -40.60364 -39.87108 -37.47537 -36.47738 -35.27907 -33.38192 -32.82024 -31.70373 -31.41559 -29.17777 -28.79995 -27.91355 -27.48778 -25.57571 -24.23646 -23.54823 -22.39427 -21.33821 -20.97520 -19.72649 -19.22791 -18.19777 -17.78604 -17.61819 -17.22169 -17.16219 -17.03950 -16.63786 -16.55902 -16.43119 -16.15695 -15.71656 -15.51039 -15.40962 -14.93263 -14.47384 -14.23137 -13.91988 -13.76597 -13.74393 -13.57564 -13.44461 -13.27893 -13.23814 -12.84981 -12.55354 -12.50070 -12.34602 -12.29749 -12.23311 -11.83979 -11.64458 -11.62997 -11.47597 -11.14003 -10.88679 -9.92367 -9.63067 -9.18660 -9.15093 -8.39792 -6.51163 -0.47543 0.27317 0.92989 1.18730 1.35870 1.39478 1.45926 1.49096 2.03539 2.10172 2.22070 2.27483 2.38872 2.65832 2.92346 3.34986 3.75423 3.78636 3.87887 3.96638 4.05092 4.08932 4.28880 4.31697 4.37749 4.38070 4.40347 4.43196 4.54832 4.70395 4.73726 4.75844 4.77689 4.82806 4.93756 4.97703 5.02123 5.05650 5.12840 5.22220 5.23996 5.29497 5.81277 5.98057 6.08378 6.16065 6.35859 6.37788 6.52590 6.84227 6.96671 7.12677 8.76834 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002109 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.289692 B =13271.322703 C =14335.809737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.161 3.839 4 C -0.259 4.259 5 C 0.161 3.839 6 O -0.327 6.327 7 C 0.013 3.987 8 C -0.140 4.140 9 C -0.057 4.057 10 C 0.570 3.430 11 O -0.533 6.533 12 N -0.617 5.617 13 C 0.273 3.727 14 C -0.298 4.298 15 C 0.092 3.908 16 C -0.089 4.089 17 N -0.340 5.340 18 C 0.241 3.759 19 C -0.551 4.551 20 H 0.023 0.977 21 C 0.021 3.979 22 N -0.937 5.937 23 Si 0.951 3.049 24 H -0.250 1.250 25 H -0.278 1.278 26 H -0.244 1.244 27 N -0.352 5.352 28 C -0.161 4.161 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.172 0.828 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.424 0.576 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.274 0.726 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.020 7.808 -10.090 31.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.115 3.885 4 C -0.279 4.279 5 C 0.114 3.886 6 O -0.240 6.240 7 C -0.081 4.081 8 C -0.160 4.160 9 C -0.061 4.061 10 C 0.358 3.642 11 O -0.409 6.409 12 N -0.266 5.266 13 C 0.019 3.981 14 C -0.329 4.329 15 C -0.038 4.038 16 C -0.146 4.146 17 N -0.123 5.123 18 C 0.121 3.879 19 C -0.589 4.589 20 H 0.041 0.959 21 C -0.179 4.179 22 N -0.575 5.575 23 Si 0.772 3.228 24 H -0.174 1.174 25 H -0.204 1.204 26 H -0.168 1.168 27 N -0.182 5.182 28 C -0.181 4.181 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.189 0.811 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.263 0.737 38 H 0.186 0.814 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.203 7.160 -9.976 30.761 hybrid contribution -0.020 -0.251 0.264 0.365 sum -28.224 6.909 -9.712 30.637 Atomic orbital electron populations 1.23473 0.75860 1.06105 1.02706 1.86128 1.23965 1.25705 1.88017 1.18512 0.91336 0.84780 0.93884 1.21695 1.02354 0.90662 1.13141 1.18476 0.90260 0.85713 0.94123 1.86124 1.21332 1.28511 1.88048 1.23482 0.75905 1.06016 1.02721 1.20327 0.91166 0.98749 1.05786 1.18892 0.89899 0.93755 1.03517 1.18451 0.87318 0.82841 0.75584 1.90704 1.72936 1.28513 1.48761 1.42394 1.01247 1.11023 1.71978 1.19236 0.84904 0.92912 1.01038 1.21476 0.90406 0.99645 1.21368 1.21779 0.98010 0.85035 0.98938 1.20563 0.92779 0.96698 1.04608 1.48465 1.04252 1.04673 1.54864 1.19807 0.78910 0.92087 0.97077 1.21245 1.10666 1.35864 0.91126 0.95851 1.25848 0.98008 0.94943 0.99089 1.70036 1.26040 1.39855 1.21589 0.85670 0.79308 0.78857 0.78947 1.17360 1.20377 1.16788 1.77184 0.88358 1.21278 1.31385 1.20556 0.92837 0.97231 1.07438 0.91014 0.86170 0.91177 0.81079 0.91022 0.91141 0.86058 0.84463 0.73675 0.81438 0.87864 0.91206 0.88251 0.93171 0.90793 0.91729 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.09 10.49 -92.51 -0.97 -6.06 16 3 C 0.16 2.86 6.68 22.45 0.15 3.01 16 4 C -0.26 -3.76 8.02 22.51 0.18 -3.58 16 5 C 0.16 3.02 6.68 22.45 0.15 3.17 16 6 O -0.33 -5.41 10.49 -92.45 -0.97 -6.38 16 7 C 0.01 0.08 9.81 113.37 1.11 1.19 16 8 C -0.14 -3.34 9.53 22.64 0.22 -3.13 16 9 C -0.06 -1.43 5.87 -20.11 -0.12 -1.55 16 10 C 0.57 18.12 7.74 86.79 0.67 18.79 16 11 O -0.53 -19.87 13.47 -3.94 -0.05 -19.92 16 12 N -0.62 -20.43 5.40 -310.11 -1.67 -22.10 16 13 C 0.27 11.46 8.11 133.35 1.08 12.54 16 14 C -0.30 -12.45 9.52 22.11 0.21 -12.24 16 15 C 0.09 3.87 6.92 41.38 0.29 4.16 16 16 C -0.09 -2.86 9.89 71.24 0.70 -2.15 16 17 N -0.34 -16.12 3.59 -338.44 -1.22 -17.34 16 18 C 0.24 11.62 4.88 85.63 0.42 12.03 16 19 C -0.55 -31.95 9.94 25.60 0.25 -31.69 16 20 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 21 C 0.02 1.18 5.47 84.66 0.46 1.64 16 22 N -0.94 -57.40 13.96 21.45 0.30 -57.11 16 23 Si 0.95 41.04 27.47 68.60 1.88 42.93 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 27 N -0.35 -16.58 12.59 -54.48 -0.69 -17.27 16 28 C -0.16 -3.40 9.48 22.65 0.21 -3.18 16 29 H 0.07 0.24 7.65 -2.39 -0.02 0.22 16 30 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.26 7.66 -2.38 -0.02 0.24 16 32 H 0.17 1.23 4.49 -2.91 -0.01 1.21 16 33 H 0.07 0.24 7.65 -2.39 -0.02 0.23 16 34 H 0.07 0.26 7.66 -2.39 -0.02 0.24 16 35 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.14 3.51 7.64 -2.91 -0.02 3.49 16 37 H 0.42 11.55 6.85 -92.71 -0.64 10.92 16 38 H 0.17 6.75 5.91 -2.91 -0.02 6.73 16 39 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.07 2.46 7.71 -2.39 -0.02 2.44 16 41 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.05 2.40 7.20 -2.38 -0.02 2.39 16 43 H 0.07 3.13 7.08 -2.39 -0.02 3.12 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.15 2.75 6.40 -2.91 -0.02 2.74 16 Total: -1.00 -80.40 379.38 4.08 -76.31 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.36 Total: 26.74 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 7.11 Total: 0.20 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.28 Total: -113.82 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.99 Total: -32.36 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.88 Total: 42.93 kcal Total: -80.40 4.08 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271154709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.083 kcal (2) G-P(sol) polarization free energy of solvation -80.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds