Wall clock time and date at job start Wed Apr 1 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39803 * 120.08465 * 2 1 4 4 C 1.36025 * 119.07859 * 180.25144 * 3 2 1 5 5 C 1.50706 * 120.40636 * 179.73495 * 4 3 2 6 6 N 1.35873 * 119.19255 * 359.46037 * 4 3 2 7 7 C 1.46501 * 119.93527 * 180.25487 * 6 4 3 8 8 C 1.50701 * 109.47009 * 89.99960 * 7 6 4 9 9 O 1.21285 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00005 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99947 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47020 * 90.00221 * 11 10 8 13 13 H 1.07996 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99872 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00354 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99673 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47408 * 59.99461 * 16 14 12 18 18 H 1.48502 * 109.47019 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46983 * 299.99015 * 16 14 12 20 20 C 1.46495 * 119.99960 * 180.02562 * 10 8 7 21 21 C 1.50705 * 109.47153 * 89.99879 * 20 10 8 22 22 C 1.34515 * 125.78484 * 89.71475 * 21 20 10 23 23 C 1.41386 * 106.83793 * 179.88866 * 22 21 20 24 24 C 1.34515 * 106.83938 * 0.37344 * 23 22 21 25 25 O 1.34300 * 108.42254 * 359.76925 * 24 23 22 26 26 C 1.34615 * 120.12428 * 0.27578 * 6 4 3 27 27 O 1.21952 * 119.52095 * 179.97438 * 26 6 4 28 28 N 1.31766 * 120.08245 * 179.70706 * 2 1 3 29 29 H 1.09002 * 109.46984 * 180.29746 * 1 2 3 30 30 H 1.09001 * 109.46711 * 300.29042 * 1 2 3 31 31 H 1.08997 * 109.46840 * 60.29300 * 1 2 3 32 32 H 1.07999 * 120.46170 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47015 * 269.72433 * 5 4 3 34 34 H 1.09000 * 109.46646 * 29.71586 * 5 4 3 35 35 H 1.09000 * 109.47248 * 149.72303 * 5 4 3 36 36 H 1.09003 * 109.46671 * 209.99346 * 7 6 4 37 37 H 1.08993 * 109.47330 * 329.99706 * 7 6 4 38 38 H 1.09003 * 109.47422 * 209.99918 * 11 10 8 39 39 H 1.09003 * 109.46990 * 330.00026 * 11 10 8 40 40 H 0.96989 * 120.00223 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.47155 * 209.99571 * 20 10 8 42 42 H 1.09000 * 109.47239 * 330.00138 * 20 10 8 43 43 H 1.07998 * 126.58659 * 0.02746 * 22 21 20 44 44 H 1.08001 * 126.57948 * 180.16842 * 23 22 21 45 45 H 1.08000 * 125.78940 * 179.74982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2079 1.2097 0.0000 4 6 3.5679 1.1858 -0.0052 5 6 4.3533 2.4720 -0.0114 6 7 4.2097 -0.0118 0.0009 7 6 5.6740 -0.0564 0.0011 8 6 6.1762 -0.0645 1.4219 9 8 5.3884 -0.0362 2.3437 10 7 7.5006 -0.1041 1.6684 11 6 8.4521 -0.1400 0.5550 12 6 8.8224 1.2678 0.1652 13 1 8.3918 2.1055 0.6936 14 6 9.7102 1.4865 -0.8668 15 7 10.2343 0.4665 -1.5107 16 14 10.1698 3.2316 -1.3495 17 1 10.7919 3.9186 -0.1893 18 1 11.1342 3.1953 -2.4782 19 1 8.9489 3.9681 -1.7646 20 6 7.9887 -0.1125 3.0496 21 6 8.1123 -1.5355 3.5301 22 6 9.2033 -2.3135 3.4125 23 6 8.8819 -3.5605 3.9962 24 6 7.6110 -3.4727 4.4281 25 8 7.1499 -2.2439 4.1432 26 6 3.5026 -1.1572 0.0063 27 8 4.0899 -2.2260 0.0113 28 7 2.1675 -1.1402 0.0058 29 1 -0.3633 -1.0277 0.0053 30 1 -0.3633 0.5184 0.8874 31 1 -0.3633 0.5093 -0.8926 32 1 1.6768 2.1501 0.0004 33 1 4.5429 2.7770 -1.0405 34 1 3.7829 3.2484 0.4984 35 1 5.3021 2.3208 0.5034 36 1 6.0100 -0.9598 -0.5081 37 1 6.0643 0.8193 -0.5173 38 1 9.3484 -0.6801 0.8602 39 1 7.9960 -0.6448 -0.2966 40 1 10.8591 0.6203 -2.2364 41 1 8.9643 0.3716 3.0931 42 1 7.2869 0.4263 3.6862 43 1 10.1449 -2.0378 2.9611 44 1 9.5310 -4.4199 4.0766 45 1 7.0555 -4.2573 4.9203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274181993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:18 Heat of formation + Delta-G solvation = -3.178645 kcal Electronic energy + Delta-G solvation = -31024.215897 eV Core-core repulsion = 26816.709664 eV Total energy + Delta-G solvation = -4207.506232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.17796 -41.71044 -39.17141 -37.12318 -36.05970 -35.29172 -32.95952 -32.54461 -32.14413 -30.98666 -30.17948 -28.52573 -27.48056 -27.00486 -25.05967 -23.17862 -22.89452 -21.84065 -21.34443 -20.37707 -19.03786 -18.31471 -17.31097 -17.15008 -16.83733 -16.45355 -15.95389 -15.85546 -15.50566 -14.98803 -14.83688 -14.53734 -14.10465 -13.95530 -13.66545 -13.59534 -13.50262 -13.15522 -12.95809 -12.69348 -12.50979 -12.48047 -12.42888 -12.28586 -12.06153 -11.84616 -11.62301 -11.42937 -11.24582 -11.07793 -10.90450 -10.67303 -10.54927 -10.35207 -10.02745 -9.57725 -9.42383 -9.41279 -8.74389 -8.30396 -8.17201 -8.02843 -6.35189 -4.46081 0.74846 1.80310 2.01207 2.53797 2.89713 3.01229 3.10324 3.18575 3.19077 3.44083 3.73150 4.02763 4.16632 4.20732 4.23025 4.68228 4.94990 4.99198 5.01118 5.08353 5.19763 5.20648 5.32910 5.35554 5.37113 5.40105 5.50098 5.56761 5.59132 5.67722 5.79223 5.85951 5.93280 5.96251 6.11370 6.26023 6.37544 6.41528 6.47866 6.68229 6.83433 6.99356 7.23448 7.51799 7.56785 7.83096 7.99379 8.04644 8.39945 8.53405 8.69072 9.23196 10.71338 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007453 B = 0.004971 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3755.728665 B = 5631.876851 C = 8491.109010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.267 3.733 3 C -0.307 4.307 4 C 0.235 3.765 5 C -0.136 4.136 6 N -0.493 5.493 7 C 0.073 3.927 8 C 0.510 3.490 9 O -0.552 6.552 10 N -0.585 5.585 11 C 0.233 3.767 12 C -0.550 4.550 13 H 0.064 0.936 14 C 0.069 3.931 15 N -0.884 5.884 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.199 3.801 21 C -0.021 4.021 22 C -0.199 4.199 23 C -0.218 4.218 24 C -0.048 4.048 25 O -0.166 6.166 26 C 0.637 3.363 27 O -0.532 6.532 28 N -0.557 5.557 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.269 0.731 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 4.015 3.845 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 C -0.333 4.333 4 C 0.115 3.885 5 C -0.193 4.193 6 N -0.207 5.207 7 C -0.052 4.052 8 C 0.297 3.703 9 O -0.432 6.432 10 N -0.316 5.316 11 C 0.114 3.886 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.521 5.521 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.075 3.925 21 C -0.073 4.073 22 C -0.219 4.219 23 C -0.237 4.237 24 C -0.116 4.116 25 O -0.061 6.061 26 C 0.340 3.660 27 O -0.407 6.407 28 N -0.292 5.292 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.172 0.828 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.734 2.382 4.218 11.776 hybrid contribution 1.216 1.338 -0.433 1.859 sum -9.518 3.720 3.785 10.898 Atomic orbital electron populations 1.20905 0.87943 1.04778 1.03474 1.22112 0.97539 0.88363 0.81382 1.21088 0.91842 1.00466 1.19896 1.21210 0.93352 0.87981 0.85998 1.21263 1.01176 0.91957 1.04934 1.46191 1.09212 1.07119 1.58131 1.21975 0.77126 1.08586 0.97522 1.20370 0.82975 0.76563 0.90421 1.90678 1.55433 1.51289 1.45757 1.48223 1.05830 1.70291 1.07281 1.19586 0.88106 0.97896 0.83049 1.21402 1.27716 0.91938 1.17832 0.91815 1.24956 0.95369 0.97460 0.95753 1.69909 1.29619 1.30397 1.22153 0.86559 0.78576 0.84070 0.78302 1.19981 1.21058 1.20015 1.19710 1.02277 0.87116 0.83368 1.23142 0.87271 0.96531 1.00327 1.21663 1.00422 0.93956 1.05849 1.21785 0.96908 0.99491 1.05489 1.23981 0.95655 0.86743 1.05233 1.84108 1.39767 1.22650 1.59621 1.18069 0.85199 0.83347 0.79411 1.90984 1.68831 1.27568 1.53285 1.69758 1.05601 1.28069 1.25760 0.89857 0.89314 0.89317 0.82844 0.88151 0.88419 0.89188 0.85183 0.84572 0.93866 0.94351 0.92152 0.86678 0.89226 0.83298 0.83796 0.78690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.19 36.01 0.37 -0.59 16 2 C 0.27 3.60 6.84 -82.03 -0.56 3.04 16 3 C -0.31 -3.60 9.44 -39.79 -0.38 -3.98 16 4 C 0.23 3.28 6.68 -81.59 -0.55 2.73 16 5 C -0.14 -1.46 9.14 36.01 0.33 -1.13 16 6 N -0.49 -8.93 2.08 -118.41 -0.25 -9.18 16 7 C 0.07 1.38 3.75 -5.19 -0.02 1.36 16 8 C 0.51 10.61 7.27 -10.98 -0.08 10.53 16 9 O -0.55 -12.69 16.01 5.55 0.09 -12.60 16 10 N -0.59 -11.87 2.44 -176.43 -0.43 -12.30 16 11 C 0.23 5.15 4.97 -5.19 -0.03 5.12 16 12 C -0.55 -12.69 9.28 -34.44 -0.32 -13.01 16 13 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 14 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.88 -22.73 13.29 55.43 0.74 -22.00 16 16 Si 0.90 18.59 29.54 -169.99 -5.02 13.57 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C 0.20 3.63 5.93 -5.19 -0.03 3.60 16 21 C -0.02 -0.39 6.90 -35.62 -0.25 -0.64 16 22 C -0.20 -3.44 10.81 -39.70 -0.43 -3.87 16 23 C -0.22 -3.38 10.91 -39.70 -0.43 -3.82 16 24 C -0.05 -0.75 12.09 29.42 0.36 -0.40 16 25 O -0.17 -3.23 10.65 5.72 0.06 -3.17 16 26 C 0.64 13.52 8.34 -88.18 -0.74 12.78 16 27 O -0.53 -13.33 16.74 4.96 0.08 -13.25 16 28 N -0.56 -10.39 10.39 -12.80 -0.13 -10.52 16 29 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.09 1.17 6.31 -51.93 -0.33 0.84 16 36 H 0.13 2.63 6.65 -51.93 -0.35 2.28 16 37 H 0.14 2.29 6.44 -51.93 -0.33 1.95 16 38 H 0.04 1.01 8.07 -51.93 -0.42 0.60 16 39 H 0.04 0.90 6.44 -51.93 -0.33 0.56 16 40 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 41 H 0.12 1.90 8.07 -51.93 -0.42 1.48 16 42 H 0.09 1.62 7.42 -51.93 -0.39 1.23 16 43 H 0.15 2.42 8.06 -52.49 -0.42 1.99 16 44 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.20 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -34.87 388.83 -7.76 -42.63 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.91 Total: 7.66 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -2.85 Total: 13.29 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.07 Total: -53.99 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: 0.23 Total: -29.02 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.87 -7.76 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274181993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.453 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds