Wall clock time and date at job start Wed Apr 1 2020 03:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39803 * 120.08465 * 2 1 4 4 C 1.36025 * 119.07859 * 180.25144 * 3 2 1 5 5 C 1.50706 * 120.40636 * 179.73495 * 4 3 2 6 6 N 1.35873 * 119.19255 * 359.46037 * 4 3 2 7 7 C 1.46501 * 119.93527 * 180.25487 * 6 4 3 8 8 C 1.50701 * 109.47009 * 89.99960 * 7 6 4 9 9 O 1.21285 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00005 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99947 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47020 * 90.00221 * 11 10 8 13 13 H 1.07996 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99872 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00354 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99673 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47408 * 59.99461 * 16 14 12 18 18 H 1.48502 * 109.47019 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46983 * 299.99015 * 16 14 12 20 20 C 1.46495 * 119.99960 * 180.02562 * 10 8 7 21 21 C 1.50705 * 109.47153 * 89.99879 * 20 10 8 22 22 C 1.34515 * 125.78484 * 89.71475 * 21 20 10 23 23 C 1.41386 * 106.83793 * 179.88866 * 22 21 20 24 24 C 1.34515 * 106.83938 * 0.37344 * 23 22 21 25 25 O 1.34300 * 108.42254 * 359.76925 * 24 23 22 26 26 C 1.34615 * 120.12428 * 0.27578 * 6 4 3 27 27 O 1.21952 * 119.52095 * 179.97438 * 26 6 4 28 28 N 1.31766 * 120.08245 * 179.70706 * 2 1 3 29 29 H 1.09002 * 109.46984 * 180.29746 * 1 2 3 30 30 H 1.09001 * 109.46711 * 300.29042 * 1 2 3 31 31 H 1.08997 * 109.46840 * 60.29300 * 1 2 3 32 32 H 1.07999 * 120.46170 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47015 * 269.72433 * 5 4 3 34 34 H 1.09000 * 109.46646 * 29.71586 * 5 4 3 35 35 H 1.09000 * 109.47248 * 149.72303 * 5 4 3 36 36 H 1.09003 * 109.46671 * 209.99346 * 7 6 4 37 37 H 1.08993 * 109.47330 * 329.99706 * 7 6 4 38 38 H 1.09003 * 109.47422 * 209.99918 * 11 10 8 39 39 H 1.09003 * 109.46990 * 330.00026 * 11 10 8 40 40 H 0.96989 * 120.00223 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.47155 * 209.99571 * 20 10 8 42 42 H 1.09000 * 109.47239 * 330.00138 * 20 10 8 43 43 H 1.07998 * 126.58659 * 0.02746 * 22 21 20 44 44 H 1.08001 * 126.57948 * 180.16842 * 23 22 21 45 45 H 1.08000 * 125.78940 * 179.74982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2079 1.2097 0.0000 4 6 3.5679 1.1858 -0.0052 5 6 4.3533 2.4720 -0.0114 6 7 4.2097 -0.0118 0.0009 7 6 5.6740 -0.0564 0.0011 8 6 6.1762 -0.0645 1.4219 9 8 5.3884 -0.0362 2.3437 10 7 7.5006 -0.1041 1.6684 11 6 8.4521 -0.1400 0.5550 12 6 8.8224 1.2678 0.1652 13 1 8.3918 2.1055 0.6936 14 6 9.7102 1.4865 -0.8668 15 7 10.2343 0.4665 -1.5107 16 14 10.1698 3.2316 -1.3495 17 1 10.7919 3.9186 -0.1893 18 1 11.1342 3.1953 -2.4782 19 1 8.9489 3.9681 -1.7646 20 6 7.9887 -0.1125 3.0496 21 6 8.1123 -1.5355 3.5301 22 6 9.2033 -2.3135 3.4125 23 6 8.8819 -3.5605 3.9962 24 6 7.6110 -3.4727 4.4281 25 8 7.1499 -2.2439 4.1432 26 6 3.5026 -1.1572 0.0063 27 8 4.0899 -2.2260 0.0113 28 7 2.1675 -1.1402 0.0058 29 1 -0.3633 -1.0277 0.0053 30 1 -0.3633 0.5184 0.8874 31 1 -0.3633 0.5093 -0.8926 32 1 1.6768 2.1501 0.0004 33 1 4.5429 2.7770 -1.0405 34 1 3.7829 3.2484 0.4984 35 1 5.3021 2.3208 0.5034 36 1 6.0100 -0.9598 -0.5081 37 1 6.0643 0.8193 -0.5173 38 1 9.3484 -0.6801 0.8602 39 1 7.9960 -0.6448 -0.2966 40 1 10.8591 0.6203 -2.2364 41 1 8.9643 0.3716 3.0931 42 1 7.2869 0.4263 3.6862 43 1 10.1449 -2.0378 2.9611 44 1 9.5310 -4.4199 4.0766 45 1 7.0555 -4.2573 4.9203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274181993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:17 Heat of formation + Delta-G solvation = -26.445980 kcal Electronic energy + Delta-G solvation = -31025.224844 eV Core-core repulsion = 26816.709664 eV Total energy + Delta-G solvation = -4208.515180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.54454 -43.03288 -40.78069 -38.56253 -37.39174 -36.91317 -34.72649 -33.95378 -33.36633 -32.34668 -31.31739 -29.73196 -29.23482 -28.10022 -26.47846 -24.96026 -24.20927 -22.96782 -22.69297 -21.74845 -20.57238 -19.56873 -18.82779 -18.74792 -18.27131 -18.08471 -17.41026 -17.21543 -16.97599 -16.52354 -16.36693 -16.15010 -15.43645 -15.05988 -14.84809 -14.68595 -14.52283 -14.40892 -14.20516 -14.08950 -13.96164 -13.78039 -13.69435 -13.51566 -13.36669 -13.13834 -13.02429 -12.96620 -12.65618 -12.53138 -12.47181 -12.12006 -12.01349 -11.81957 -11.79445 -11.06637 -10.88883 -10.71933 -10.59433 -9.83704 -9.55421 -9.46250 -8.20191 -6.37363 -0.38412 0.61461 0.63775 1.20168 1.35634 1.48577 1.51180 1.57867 1.62087 2.10161 2.22769 2.43754 2.69296 3.11198 3.14903 3.22907 3.40255 3.57533 3.71938 3.78844 4.04226 4.08434 4.09717 4.24337 4.28749 4.37720 4.45765 4.48334 4.57855 4.64705 4.70419 4.84358 4.84518 4.88537 4.94999 4.95394 5.12371 5.12529 5.19226 5.42746 5.48702 5.51308 5.56858 5.70919 5.98089 6.15140 6.31603 6.68098 6.73581 6.98158 7.05461 7.36154 8.86304 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007453 B = 0.004971 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3755.728665 B = 5631.876851 C = 8491.109010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.263 3.737 3 C -0.282 4.282 4 C 0.209 3.791 5 C -0.132 4.132 6 N -0.499 5.499 7 C 0.084 3.916 8 C 0.509 3.491 9 O -0.577 6.577 10 N -0.585 5.585 11 C 0.248 3.752 12 C -0.547 4.547 13 H 0.071 0.929 14 C 0.025 3.975 15 N -0.921 5.921 16 Si 0.960 3.040 17 H -0.271 1.271 18 H -0.292 1.292 19 H -0.259 1.259 20 C 0.198 3.802 21 C -0.051 4.051 22 C -0.202 4.202 23 C -0.221 4.221 24 C -0.049 4.049 25 O -0.196 6.196 26 C 0.623 3.377 27 O -0.600 6.600 28 N -0.600 5.600 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.211 0.789 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.026 0.974 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.130 0.870 42 H 0.089 0.911 43 H 0.155 0.845 44 H 0.176 0.824 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 6.921 4.024 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 C -0.306 4.306 4 C 0.091 3.909 5 C -0.189 4.189 6 N -0.212 5.212 7 C -0.042 4.042 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.315 5.315 11 C 0.128 3.872 12 C -0.585 4.585 13 H 0.089 0.911 14 C -0.176 4.176 15 N -0.559 5.559 16 Si 0.785 3.215 17 H -0.196 1.196 18 H -0.217 1.217 19 H -0.183 1.183 20 C 0.075 3.925 21 C -0.102 4.102 22 C -0.222 4.222 23 C -0.240 4.240 24 C -0.117 4.117 25 O -0.092 6.092 26 C 0.326 3.674 27 O -0.480 6.480 28 N -0.338 5.338 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.228 0.772 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.172 0.828 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.173 0.827 44 H 0.193 0.807 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -12.472 5.377 4.411 14.280 hybrid contribution 1.621 0.446 -0.440 1.738 sum -10.851 5.822 3.972 12.939 Atomic orbital electron populations 1.21127 0.83935 1.05168 1.06415 1.23115 1.00020 0.87680 0.78561 1.21766 0.90889 1.01986 1.15980 1.22054 0.94826 0.87545 0.86436 1.21406 1.00004 0.90990 1.06455 1.46055 1.08523 1.08127 1.58523 1.21780 0.78296 1.08003 0.96130 1.20657 0.82839 0.75899 0.90950 1.90642 1.55885 1.52578 1.46684 1.48217 1.05524 1.69934 1.07790 1.19261 0.87448 0.97497 0.82959 1.21580 1.27253 0.92162 1.17554 0.91067 1.25710 0.95269 1.00970 0.95691 1.70039 1.30504 1.32540 1.22854 0.85563 0.78577 0.79692 0.77645 1.19618 1.21745 1.18305 1.19821 1.02836 0.87642 0.82152 1.23194 0.87903 0.96999 1.02081 1.21927 1.00235 0.94712 1.05294 1.22170 0.97339 0.99689 1.04793 1.24847 0.96239 0.86154 1.04425 1.84082 1.40670 1.24183 1.60300 1.18426 0.86230 0.83358 0.79357 1.90901 1.70183 1.29923 1.57039 1.69752 1.04337 1.30921 1.28820 0.90981 0.86303 0.85700 0.77242 0.85922 0.84706 0.91804 0.87701 0.82820 0.95547 0.96177 0.92319 0.85265 0.89297 0.82720 0.80705 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.19 71.24 0.73 -0.71 16 2 C 0.26 6.53 6.84 42.95 0.29 6.82 16 3 C -0.28 -5.57 9.44 22.13 0.21 -5.36 16 4 C 0.21 5.46 6.68 41.42 0.28 5.74 16 5 C -0.13 -2.44 9.14 71.24 0.65 -1.79 16 6 N -0.50 -18.61 2.08 -646.73 -1.34 -19.95 16 7 C 0.08 3.33 3.75 85.63 0.32 3.65 16 8 C 0.51 22.12 7.27 87.66 0.64 22.76 16 9 O -0.58 -27.51 16.01 -3.05 -0.05 -27.56 16 10 N -0.58 -24.67 2.44 -830.49 -2.03 -26.70 16 11 C 0.25 11.42 4.97 85.63 0.43 11.85 16 12 C -0.55 -25.34 9.28 25.60 0.24 -25.10 16 13 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 14 C 0.02 1.18 5.46 84.66 0.46 1.65 16 15 N -0.92 -48.18 13.29 21.45 0.28 -47.89 16 16 Si 0.96 37.37 29.54 68.60 2.03 39.40 16 17 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 20 C 0.20 7.49 5.93 85.64 0.51 8.00 16 21 C -0.05 -1.97 6.90 24.83 0.17 -1.80 16 22 C -0.20 -7.08 10.81 22.19 0.24 -6.84 16 23 C -0.22 -6.71 10.91 22.19 0.24 -6.47 16 24 C -0.05 -1.54 12.09 66.97 0.81 -0.73 16 25 O -0.20 -7.82 10.65 -2.45 -0.03 -7.85 16 26 C 0.62 27.88 8.34 179.50 1.50 29.38 16 27 O -0.60 -32.63 16.74 -5.16 -0.09 -32.72 16 28 N -0.60 -22.88 10.39 -313.21 -3.26 -26.13 16 29 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 30 H 0.12 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.21 1.71 8.06 -2.91 -0.02 1.68 16 33 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.13 1.47 8.09 -2.39 -0.02 1.45 16 35 H 0.06 1.56 6.31 -2.39 -0.02 1.55 16 36 H 0.10 4.67 6.65 -2.39 -0.02 4.65 16 37 H 0.15 5.33 6.44 -2.39 -0.02 5.32 16 38 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 39 H 0.02 1.00 6.44 -2.39 -0.02 0.99 16 40 H 0.27 13.43 8.31 -92.72 -0.77 12.66 16 41 H 0.13 4.37 8.07 -2.39 -0.02 4.35 16 42 H 0.09 3.33 7.42 -2.39 -0.02 3.31 16 43 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 44 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.23 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -82.69 388.83 4.25 -78.44 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 1.02 Total: 29.92 kcal Atomic # 6 Polarization: 33.33 SS G_CDS: 7.71 Total: 41.04 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.34 Total: -120.67 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -0.16 Total: -68.12 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Total: -82.69 4.25 -78.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274181993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.990 kcal (2) G-P(sol) polarization free energy of solvation -82.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds