Wall clock time and date at job start Wed Apr 1 2020 03:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30171 * 126.80463 * 2 1 4 4 O 1.20920 * 111.60596 * 180.02562 * 3 2 1 5 5 C 1.34044 * 111.56458 * 359.76287 * 4 3 2 6 6 C 1.50696 * 126.77379 * 180.28408 * 5 4 3 7 7 C 1.35447 * 106.44395 * 0.38145 * 5 4 3 8 8 C 1.50707 * 128.00176 * 179.91139 * 7 5 4 9 9 C 1.53001 * 109.46812 * 212.55804 * 8 7 5 10 10 C 1.53000 * 109.47061 * 92.56083 * 8 7 5 11 11 N 1.46496 * 109.47256 * 332.56266 * 8 7 5 12 12 S 1.65595 * 119.99912 * 170.42268 * 11 8 7 13 13 O 1.42099 * 106.40481 * 161.25983 * 12 11 8 14 14 O 1.42101 * 106.40444 * 28.33658 * 12 11 8 15 15 N 1.65605 * 107.21878 * 274.79793 * 12 11 8 16 16 C 1.46505 * 119.99628 * 286.17155 * 15 12 11 17 17 C 1.46498 * 120.00169 * 106.16197 * 15 12 11 18 18 H 1.09004 * 109.47168 * 353.02748 * 17 15 12 19 19 C 1.53000 * 109.47395 * 233.02250 * 17 15 12 20 20 C 1.50706 * 109.46828 * 113.02042 * 17 15 12 21 21 H 1.07995 * 119.99712 * 0.02562 * 20 17 15 22 22 C 1.37876 * 119.99842 * 180.02562 * 20 17 15 23 23 N 1.31515 * 120.00253 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99979 * 180.02562 * 22 20 17 25 25 H 1.48492 * 109.47046 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.46918 * 300.00133 * 24 22 20 27 27 H 1.48497 * 109.46764 * 59.99767 * 24 22 20 28 28 H 1.09003 * 109.47078 * 261.99482 * 1 2 3 29 29 H 1.09002 * 109.47087 * 21.99027 * 1 2 3 30 30 H 1.09000 * 109.47503 * 141.99115 * 1 2 3 31 31 H 1.08998 * 109.47121 * 264.21808 * 6 5 4 32 32 H 1.09001 * 109.47560 * 24.22188 * 6 5 4 33 33 H 1.09004 * 109.47146 * 144.22171 * 6 5 4 34 34 H 1.09007 * 109.46793 * 163.16579 * 9 8 7 35 35 H 1.09002 * 109.47322 * 283.16528 * 9 8 7 36 36 H 1.08998 * 109.47070 * 43.16562 * 9 8 7 37 37 H 1.09000 * 109.46943 * 301.13194 * 10 8 7 38 38 H 1.09003 * 109.47187 * 61.12914 * 10 8 7 39 39 H 1.09002 * 109.47326 * 181.12558 * 10 8 7 40 40 H 0.97000 * 119.99870 * 350.41161 * 11 8 7 41 41 H 1.09000 * 109.46751 * 275.04731 * 16 15 12 42 42 H 1.08990 * 109.47422 * 35.05057 * 16 15 12 43 43 H 1.08999 * 109.46511 * 155.05214 * 16 15 12 44 44 H 1.08996 * 109.47012 * 301.38813 * 19 17 15 45 45 H 1.08996 * 109.46801 * 61.39291 * 19 17 15 46 46 H 1.09003 * 109.46959 * 181.39026 * 19 17 15 47 47 H 0.96993 * 120.00100 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7252 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 4.9021 -1.3696 0.0112 7 6 2.3539 -1.1320 -0.0006 8 6 1.9590 -2.5864 -0.0002 9 6 0.6556 -2.7612 -0.7822 10 6 1.7565 -3.0595 1.4407 11 7 3.0169 -3.3799 -0.6305 12 16 2.9658 -5.0335 -0.5589 13 8 3.8237 -5.5065 -1.5882 14 8 1.5931 -5.3890 -0.4667 15 7 3.6627 -5.4839 0.8743 16 6 5.1160 -5.4007 1.0401 17 6 2.8260 -5.9652 1.9763 18 1 1.7750 -5.8410 1.7156 19 6 3.1363 -5.1618 3.2409 20 6 3.1129 -7.4237 2.2248 21 1 3.8455 -7.9402 1.6223 22 6 2.4401 -8.0986 3.2212 23 7 1.5477 -7.4698 3.9545 24 14 2.7962 -9.9063 3.5296 25 1 1.9471 -10.3945 4.6458 26 1 2.4961 -10.6863 2.3022 27 1 4.2279 -10.0749 3.8856 28 1 -0.3633 -0.1431 1.0177 29 1 -0.3633 0.9529 -0.3848 30 1 -0.3634 -0.8097 -0.6328 31 1 5.1666 -1.6461 -1.0094 32 1 5.6884 -0.7440 0.4336 33 1 4.7913 -2.2707 0.6145 34 1 0.5246 -3.8122 -1.0399 35 1 -0.1830 -2.4301 -0.1695 36 1 0.6965 -2.1658 -1.6943 37 1 2.6792 -2.9162 2.0031 38 1 0.9557 -2.4826 1.9034 39 1 1.4904 -4.1165 1.4422 40 1 3.7472 -2.9367 -1.0900 41 1 5.5786 -6.3071 0.6497 42 1 5.4949 -4.5359 0.4957 43 1 5.3555 -5.2974 2.0984 44 1 4.1928 -5.2662 3.4876 45 1 2.9054 -4.1105 3.0691 46 1 2.5316 -5.5364 4.0668 47 1 1.0741 -7.9447 4.6552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285401384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:35 Heat of formation + Delta-G solvation = 0.204731 kcal Electronic energy + Delta-G solvation = -31411.964464 eV Core-core repulsion = 27340.048897 eV Total energy + Delta-G solvation = -4071.915567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.03167 -38.40166 -36.66771 -36.27971 -35.28773 -34.46995 -32.94451 -32.62236 -30.71763 -29.27908 -28.88559 -27.67735 -27.01262 -25.80609 -25.01494 -23.63087 -21.00869 -20.54808 -20.19752 -18.69466 -17.76623 -17.60767 -17.07464 -16.69316 -16.34503 -15.87521 -15.02080 -14.55396 -14.47181 -14.16778 -14.00139 -13.60860 -13.54309 -13.43604 -13.31927 -13.21977 -12.86741 -12.75705 -12.52660 -12.30950 -12.20784 -11.96473 -11.78676 -11.64317 -11.62914 -11.31100 -11.26182 -11.10660 -11.08818 -10.82609 -10.77556 -10.51992 -10.40256 -10.24404 -10.10024 -9.95119 -9.58367 -9.25688 -9.05201 -8.44928 -8.00975 -6.09189 -4.16173 1.09900 1.36331 2.10463 2.98102 3.28913 3.33532 3.36660 3.42305 3.98729 4.09187 4.35298 4.38954 4.62964 4.75103 4.92887 4.99319 5.12799 5.16550 5.20812 5.23687 5.30156 5.37232 5.44391 5.49829 5.57191 5.62467 5.79981 5.80356 5.92357 5.98838 6.00601 6.02827 6.18972 6.29842 6.45135 6.51373 6.62070 6.76534 6.79704 6.98081 7.08048 7.44490 7.61609 7.77869 8.02051 8.18818 8.25552 8.86327 9.50036 10.95662 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.003935 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.728522 B = 7114.027212 C = 7373.084059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.036 3.964 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.024 4.024 6 C -0.085 4.085 7 C -0.191 4.191 8 C 0.271 3.729 9 C -0.187 4.187 10 C -0.189 4.189 11 N -1.131 6.131 12 S 2.780 3.220 13 O -0.994 6.994 14 O -0.968 6.968 15 N -0.991 5.991 16 C 0.105 3.895 17 C 0.267 3.733 18 H 0.068 0.932 19 C -0.160 4.160 20 C -0.525 4.525 21 H 0.061 0.939 22 C 0.065 3.935 23 N -0.889 5.889 24 Si 0.896 3.104 25 H -0.287 1.287 26 H -0.276 1.276 27 H -0.277 1.277 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.406 0.594 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.025 0.975 46 H 0.093 0.907 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 13.952 -5.752 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.196 4.196 8 C 0.182 3.818 9 C -0.245 4.245 10 C -0.246 4.246 11 N -0.890 5.890 12 S 2.789 3.211 13 O -0.978 6.978 14 O -0.952 6.952 15 N -0.834 5.834 16 C -0.042 4.042 17 C 0.164 3.836 18 H 0.086 0.914 19 C -0.219 4.219 20 C -0.564 4.564 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.724 3.276 25 H -0.212 1.212 26 H -0.202 1.202 27 H -0.203 1.203 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.240 0.760 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.111 0.889 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.957 14.562 -6.182 15.940 hybrid contribution 0.700 -1.223 0.389 1.462 sum 2.657 13.339 -5.793 14.784 Atomic orbital electron populations 1.20568 0.86021 1.04260 1.04080 1.23311 0.98901 0.87979 1.02203 1.73833 0.89247 1.23847 1.20637 1.84782 1.21652 1.22441 1.68070 1.24163 0.98104 0.83612 1.02843 1.20575 0.90206 0.99368 1.04130 1.20989 0.91856 0.96726 1.10014 1.18100 0.86802 0.83310 0.93584 1.22840 0.95838 1.05815 0.99976 1.22951 1.03599 1.04709 0.93364 1.56624 1.35079 1.27340 1.69926 1.02005 0.73621 0.72180 0.73280 1.93562 1.68960 1.78448 1.56831 1.93532 1.32940 1.82032 1.86697 1.57719 1.14189 1.78618 1.32907 1.21192 0.80510 0.99464 1.02989 1.18811 0.90164 0.93134 0.81475 0.91444 1.22381 1.00638 0.96748 1.02146 1.21367 1.23200 0.94506 1.17350 0.92118 1.24880 0.94809 0.98328 0.95682 1.69833 1.25252 1.36339 1.21309 0.86591 0.78194 0.84983 0.77856 1.21227 1.20169 1.20265 0.89855 0.90803 0.88571 0.89275 0.89477 0.88128 0.88124 0.90582 0.92436 0.90496 0.90822 0.88626 0.75979 0.93184 0.94083 0.90352 0.94880 0.95620 0.88901 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 9.61 36.01 0.35 -0.54 16 2 C 0.04 0.44 7.21 -82.10 -0.59 -0.15 16 3 N -0.37 -5.00 12.07 33.42 0.40 -4.60 16 4 O 0.09 1.19 11.20 17.17 0.19 1.39 16 5 C -0.02 -0.27 7.33 -35.31 -0.26 -0.53 16 6 C -0.09 -0.70 8.58 36.00 0.31 -0.39 16 7 C -0.19 -2.36 4.91 -104.42 -0.51 -2.87 16 8 C 0.27 3.61 1.00 -132.97 -0.13 3.48 16 9 C -0.19 -2.43 7.06 37.16 0.26 -2.17 16 10 C -0.19 -2.75 6.47 37.16 0.24 -2.51 16 11 N -1.13 -15.42 4.54 -0.40 0.00 -15.42 16 12 S 2.78 50.69 5.47 -107.50 -0.59 50.10 16 13 O -0.99 -20.18 17.71 -57.17 -1.01 -21.19 16 14 O -0.97 -20.27 12.17 -57.17 -0.70 -20.97 16 15 N -0.99 -18.70 2.84 -115.85 -0.33 -19.03 16 16 C 0.11 1.65 9.91 59.85 0.59 2.25 16 17 C 0.27 6.01 1.55 -69.08 -0.11 5.90 16 18 H 0.07 1.68 5.28 -51.93 -0.27 1.41 16 19 C -0.16 -3.31 8.62 37.16 0.32 -2.99 16 20 C -0.52 -13.55 8.50 -34.44 -0.29 -13.85 16 21 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 22 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -23.79 11.31 55.43 0.63 -23.16 16 24 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.84 4.74 -51.93 -0.25 0.59 16 31 H 0.09 0.58 7.37 -51.93 -0.38 0.20 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.86 7.25 -51.93 -0.38 0.48 16 34 H 0.10 1.55 5.33 -51.92 -0.28 1.28 16 35 H 0.08 0.85 6.14 -51.93 -0.32 0.53 16 36 H 0.06 0.66 7.61 -51.93 -0.40 0.27 16 37 H 0.08 1.09 6.12 -51.93 -0.32 0.77 16 38 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 39 H 0.10 1.68 3.32 -51.93 -0.17 1.50 16 40 H 0.41 4.59 5.73 -34.47 -0.20 4.39 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.48 7.99 -51.93 -0.41 0.07 16 43 H 0.08 1.20 6.05 -51.93 -0.31 0.88 16 44 H 0.03 0.65 6.37 -51.93 -0.33 0.31 16 45 H 0.03 0.45 4.42 -51.93 -0.23 0.22 16 46 H 0.09 2.20 6.04 -51.93 -0.31 1.88 16 47 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -31.47 360.80 -7.13 -38.60 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.22 Total: 5.95 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.70 Total: -62.21 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.52 Total: -40.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.59 Total: 50.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.47 -7.13 -38.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285401384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.801 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds