Wall clock time and date at job start Wed Apr 1 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35806 * 116.99861 * 2 1 4 4 C 1.38838 * 119.92940 * 0.02562 * 3 2 1 5 5 C 1.37782 * 120.15020 * 179.97438 * 4 3 2 6 6 C 1.39707 * 120.00655 * 0.02562 * 5 4 3 7 7 C 1.47585 * 120.07613 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00070 * 173.75393 * 7 6 5 9 9 N 1.34777 * 119.99428 * 354.02259 * 7 6 5 10 10 C 1.40090 * 119.99671 * 179.72752 * 9 7 6 11 11 C 1.40428 * 125.97513 * 359.72080 * 10 9 7 12 12 C 1.35242 * 107.86302 * 179.82609 * 11 10 9 13 13 N 1.34970 * 107.86724 * 0.42903 * 12 11 10 14 14 C 1.46492 * 125.97637 * 179.70972 * 13 12 11 15 15 C 1.50697 * 109.47621 * 124.99366 * 14 13 12 16 16 H 1.08005 * 119.99564 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00473 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99632 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47269 * 89.99951 * 19 17 15 21 21 H 1.48497 * 109.47324 * 210.00245 * 19 17 15 22 22 H 1.48506 * 109.47085 * 330.00214 * 19 17 15 23 23 N 1.31232 * 125.97375 * 180.02562 * 10 9 7 24 24 C 1.39743 * 119.85560 * 0.24619 * 6 5 4 25 25 C 1.50704 * 120.07702 * 179.72407 * 24 6 5 26 26 C 1.38141 * 119.84747 * 359.47548 * 24 6 5 27 27 O 1.36000 * 120.00392 * 180.22330 * 26 24 6 28 28 C 1.42897 * 117.00337 * 270.32712 * 27 26 24 29 29 H 1.08991 * 109.47323 * 59.99555 * 1 2 3 30 30 H 1.08995 * 109.46870 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47145 * 299.99799 * 1 2 3 32 32 H 1.07999 * 119.91827 * 359.97079 * 4 3 2 33 33 H 1.08009 * 119.99587 * 179.97438 * 5 4 3 34 34 H 0.96998 * 120.00684 * 359.72642 * 9 7 6 35 35 H 1.07993 * 126.06610 * 359.97438 * 11 10 9 36 36 H 1.07998 * 126.06499 * 180.12848 * 12 11 10 37 37 H 1.08999 * 109.47006 * 244.99688 * 14 13 12 38 38 H 1.09001 * 109.47222 * 4.99143 * 14 13 12 39 39 H 0.97004 * 119.99643 * 180.02562 * 18 17 15 40 40 H 1.09008 * 109.46580 * 83.40579 * 25 24 6 41 41 H 1.08998 * 109.47075 * 203.39853 * 25 24 6 42 42 H 1.08994 * 109.47282 * 323.40292 * 25 24 6 43 43 H 1.08998 * 109.46873 * 299.99647 * 28 27 26 44 44 H 1.09002 * 109.47278 * 59.99596 * 28 27 26 45 45 H 1.09000 * 109.47129 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2879 2.3735 0.0005 5 6 1.9086 3.6036 0.0011 6 6 3.3035 3.6822 0.0005 7 6 3.9700 4.9990 0.0005 8 8 5.1786 5.0687 0.1146 9 7 3.2384 6.1245 -0.1205 10 6 3.8705 7.3747 -0.1148 11 6 5.2504 7.6008 0.0146 12 6 5.4579 8.9364 -0.0306 13 7 4.2579 9.5374 -0.1731 14 6 4.0231 10.9808 -0.2594 15 6 3.2541 11.2905 -1.5178 16 1 2.9684 10.4918 -2.1864 17 6 2.9142 12.5932 -1.8152 18 7 3.2617 13.5656 -1.0009 19 14 1.9604 12.9769 -3.3748 20 1 0.5039 12.9240 -3.0899 21 1 2.3219 14.3349 -3.8547 22 1 2.2971 11.9767 -4.4196 23 7 3.2760 8.5395 -0.2238 24 6 4.0663 2.5114 -0.0058 25 6 5.5712 2.5905 -0.0126 26 6 3.4377 1.2813 -0.0004 27 8 4.1770 0.1398 -0.0019 28 6 4.5296 -0.4032 -1.2758 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 0.2095 2.3141 0.0005 33 1 1.3168 4.5071 0.0011 34 1 2.2743 6.0689 -0.2116 35 1 6.0111 6.8426 0.1276 36 1 6.4138 9.4341 0.0401 37 1 3.4485 11.3078 0.6073 38 1 4.9791 11.5039 -0.2798 39 1 3.0223 14.4821 -1.2099 40 1 5.9326 2.7250 1.0070 41 1 5.9816 1.6687 -0.4248 42 1 5.8879 3.4348 -0.6248 43 1 3.6234 -0.6405 -1.8330 44 1 5.1173 0.3271 -1.8320 45 1 5.1174 -1.3101 -1.1342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286130573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:34 Heat of formation + Delta-G solvation = 9.851007 kcal Electronic energy + Delta-G solvation = -29208.038192 eV Core-core repulsion = 25001.096967 eV Total energy + Delta-G solvation = -4206.941224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.23634 -40.56353 -39.40204 -38.55445 -36.91762 -34.96958 -33.41136 -32.35927 -31.31810 -30.36461 -29.33038 -28.26215 -27.68026 -26.60632 -26.32491 -24.08300 -22.95423 -21.94445 -21.39116 -20.24092 -19.63026 -18.45045 -17.80210 -17.30269 -16.81089 -16.59744 -16.44526 -16.07861 -15.54281 -15.32384 -15.21790 -15.16651 -14.57724 -14.25070 -14.05653 -13.85342 -13.78820 -13.27029 -13.19713 -12.78037 -12.51163 -12.42899 -12.35209 -12.24963 -12.17686 -12.12033 -11.72812 -11.38981 -11.29579 -11.05281 -10.89115 -10.45460 -10.34928 -10.26848 -9.95212 -9.52560 -9.42807 -9.02918 -8.64974 -8.58595 -8.13555 -7.47074 -6.25582 -4.30635 0.52492 0.80688 2.38903 2.69822 2.76820 2.86047 3.22599 3.23703 3.28455 3.33514 3.55195 3.82668 3.87435 4.30598 4.33574 4.45725 4.55838 4.64264 4.71008 4.76520 4.94920 5.03495 5.05266 5.07615 5.09613 5.20633 5.34869 5.47090 5.54698 5.63937 5.72421 5.79922 5.80840 5.94572 6.13915 6.20717 6.39565 6.48427 6.61936 6.68774 6.85461 7.04265 7.26099 7.38561 7.55827 7.69826 7.87701 8.03296 8.22591 8.61662 8.78848 9.34968 10.83139 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017576 B = 0.002139 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.705983 B =13086.838516 C =14053.971593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.141 3.859 4 C -0.213 4.213 5 C -0.041 4.041 6 C -0.160 4.160 7 C 0.569 3.431 8 O -0.508 6.508 9 N -0.626 5.626 10 C 0.258 3.742 11 C -0.286 4.286 12 C 0.051 3.949 13 N -0.318 5.318 14 C 0.258 3.742 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 N -0.305 5.305 24 C 0.004 3.996 25 C -0.119 4.119 26 C 0.047 3.953 27 O -0.318 6.318 28 C 0.032 3.968 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.408 0.592 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 -27.275 1.516 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.215 6.215 3 C 0.094 3.906 4 C -0.232 4.232 5 C -0.060 4.060 6 C -0.164 4.164 7 C 0.357 3.643 8 O -0.384 6.384 9 N -0.274 5.274 10 C 0.005 3.995 11 C -0.317 4.317 12 C -0.099 4.099 13 N -0.100 5.100 14 C 0.141 3.859 15 C -0.567 4.567 16 H 0.087 0.913 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.136 5.136 24 C 0.002 3.998 25 C -0.175 4.175 26 C 0.003 3.997 27 O -0.235 6.235 28 C -0.063 4.063 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.245 0.755 35 H 0.178 0.822 36 H 0.185 0.815 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.602 -26.589 1.632 26.766 hybrid contribution -0.825 0.188 -0.962 1.281 sum -3.427 -26.401 0.671 26.631 Atomic orbital electron populations 1.23174 0.78031 1.04341 1.01750 1.86135 1.21595 1.26167 1.87649 1.19671 0.91561 0.84974 0.94372 1.21056 1.00467 0.91378 1.10279 1.21170 0.93176 0.97842 0.93838 1.19419 0.93226 0.92478 1.11278 1.17909 0.86688 0.82979 0.76756 1.90677 1.13465 1.86207 1.48052 1.42323 1.10734 1.02521 1.71817 1.19053 0.91774 0.85253 1.03445 1.21533 0.94965 0.95525 1.19700 1.22573 0.91739 0.93354 1.02194 1.49084 1.02308 1.07617 1.50996 1.19750 0.98997 0.68020 0.99179 1.21252 1.36116 0.93286 1.06013 0.91317 1.24948 0.95832 0.95753 0.97581 1.69919 1.46128 1.00330 1.36945 0.86324 0.80047 0.77589 0.82510 1.20350 1.20976 1.19723 1.77332 1.14604 0.93853 1.27788 1.20096 0.97670 0.89734 0.92288 1.21066 0.88632 1.03391 1.04398 1.17579 0.86149 0.86423 1.09570 1.86131 1.70405 1.37859 1.29059 1.23034 0.99840 0.98672 0.84730 0.92292 0.87934 0.92197 0.84193 0.84634 0.75539 0.82153 0.81455 0.93704 0.92495 0.92320 0.89783 0.92044 0.88077 0.93565 0.93384 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.82 10.27 -33.79 -0.35 -3.17 16 3 C 0.14 1.44 6.71 -38.93 -0.26 1.18 16 4 C -0.21 -1.83 9.01 -39.53 -0.36 -2.19 16 5 C -0.04 -0.40 9.51 -39.20 -0.37 -0.77 16 6 C -0.16 -1.93 5.87 -104.97 -0.62 -2.55 16 7 C 0.57 8.40 7.66 -12.45 -0.10 8.30 16 8 O -0.51 -8.50 10.46 5.28 0.06 -8.44 16 9 N -0.63 -9.73 5.39 -12.06 -0.07 -9.80 16 10 C 0.26 5.12 8.11 -154.44 -1.25 3.87 16 11 C -0.29 -5.58 9.61 -39.82 -0.38 -5.96 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 13 N -0.32 -7.34 3.67 -62.57 -0.23 -7.57 16 14 C 0.26 6.51 6.26 -5.20 -0.03 6.48 16 15 C -0.53 -14.60 9.24 -34.44 -0.32 -14.92 16 16 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 19 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.30 -6.94 12.42 31.43 0.39 -6.55 16 24 C 0.00 0.04 5.92 -104.09 -0.62 -0.57 16 25 C -0.12 -1.37 8.56 36.01 0.31 -1.07 16 26 C 0.05 0.54 5.70 -39.18 -0.22 0.32 16 27 O -0.32 -3.58 9.33 -34.40 -0.32 -3.90 16 28 C 0.03 0.25 10.72 101.05 1.08 1.33 16 29 H 0.06 0.23 7.65 -51.93 -0.40 -0.16 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.25 7.65 -51.92 -0.40 -0.15 16 32 H 0.14 0.81 6.27 -52.49 -0.33 0.49 16 33 H 0.14 1.00 6.44 -52.48 -0.34 0.66 16 34 H 0.41 5.17 6.88 -40.82 -0.28 4.89 16 35 H 0.16 2.99 5.91 -52.49 -0.31 2.68 16 36 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 41 H 0.06 0.61 6.21 -51.93 -0.32 0.29 16 42 H 0.10 1.31 5.86 -51.93 -0.30 1.00 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.36 7.36 -51.93 -0.38 -0.03 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -33.43 378.46 -7.10 -40.53 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.56 Total: 4.47 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.44 Total: -3.03 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.83 Total: -48.37 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.61 Total: -15.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.43 -7.10 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286130573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.384 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds