Wall clock time and date at job start Wed Apr 1 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35806 * 116.99861 * 2 1 4 4 C 1.38838 * 119.92940 * 0.02562 * 3 2 1 5 5 C 1.37782 * 120.15020 * 179.97438 * 4 3 2 6 6 C 1.39707 * 120.00655 * 0.02562 * 5 4 3 7 7 C 1.47585 * 120.07613 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00070 * 173.75393 * 7 6 5 9 9 N 1.34777 * 119.99428 * 354.02259 * 7 6 5 10 10 C 1.40090 * 119.99671 * 179.72752 * 9 7 6 11 11 C 1.40428 * 125.97513 * 359.72080 * 10 9 7 12 12 C 1.35242 * 107.86302 * 179.82609 * 11 10 9 13 13 N 1.34970 * 107.86724 * 0.42903 * 12 11 10 14 14 C 1.46492 * 125.97637 * 179.70972 * 13 12 11 15 15 C 1.50697 * 109.47621 * 124.99366 * 14 13 12 16 16 H 1.08005 * 119.99564 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00473 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99632 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47269 * 89.99951 * 19 17 15 21 21 H 1.48497 * 109.47324 * 210.00245 * 19 17 15 22 22 H 1.48506 * 109.47085 * 330.00214 * 19 17 15 23 23 N 1.31232 * 125.97375 * 180.02562 * 10 9 7 24 24 C 1.39743 * 119.85560 * 0.24619 * 6 5 4 25 25 C 1.50704 * 120.07702 * 179.72407 * 24 6 5 26 26 C 1.38141 * 119.84747 * 359.47548 * 24 6 5 27 27 O 1.36000 * 120.00392 * 180.22330 * 26 24 6 28 28 C 1.42897 * 117.00337 * 270.32712 * 27 26 24 29 29 H 1.08991 * 109.47323 * 59.99555 * 1 2 3 30 30 H 1.08995 * 109.46870 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47145 * 299.99799 * 1 2 3 32 32 H 1.07999 * 119.91827 * 359.97079 * 4 3 2 33 33 H 1.08009 * 119.99587 * 179.97438 * 5 4 3 34 34 H 0.96998 * 120.00684 * 359.72642 * 9 7 6 35 35 H 1.07993 * 126.06610 * 359.97438 * 11 10 9 36 36 H 1.07998 * 126.06499 * 180.12848 * 12 11 10 37 37 H 1.08999 * 109.47006 * 244.99688 * 14 13 12 38 38 H 1.09001 * 109.47222 * 4.99143 * 14 13 12 39 39 H 0.97004 * 119.99643 * 180.02562 * 18 17 15 40 40 H 1.09008 * 109.46580 * 83.40579 * 25 24 6 41 41 H 1.08998 * 109.47075 * 203.39853 * 25 24 6 42 42 H 1.08994 * 109.47282 * 323.40292 * 25 24 6 43 43 H 1.08998 * 109.46873 * 299.99647 * 28 27 26 44 44 H 1.09002 * 109.47278 * 59.99596 * 28 27 26 45 45 H 1.09000 * 109.47129 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2879 2.3735 0.0005 5 6 1.9086 3.6036 0.0011 6 6 3.3035 3.6822 0.0005 7 6 3.9700 4.9990 0.0005 8 8 5.1786 5.0687 0.1146 9 7 3.2384 6.1245 -0.1205 10 6 3.8705 7.3747 -0.1148 11 6 5.2504 7.6008 0.0146 12 6 5.4579 8.9364 -0.0306 13 7 4.2579 9.5374 -0.1731 14 6 4.0231 10.9808 -0.2594 15 6 3.2541 11.2905 -1.5178 16 1 2.9684 10.4918 -2.1864 17 6 2.9142 12.5932 -1.8152 18 7 3.2617 13.5656 -1.0009 19 14 1.9604 12.9769 -3.3748 20 1 0.5039 12.9240 -3.0899 21 1 2.3219 14.3349 -3.8547 22 1 2.2971 11.9767 -4.4196 23 7 3.2760 8.5395 -0.2238 24 6 4.0663 2.5114 -0.0058 25 6 5.5712 2.5905 -0.0126 26 6 3.4377 1.2813 -0.0004 27 8 4.1770 0.1398 -0.0019 28 6 4.5296 -0.4032 -1.2758 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 0.2095 2.3141 0.0005 33 1 1.3168 4.5071 0.0011 34 1 2.2743 6.0689 -0.2116 35 1 6.0111 6.8426 0.1276 36 1 6.4138 9.4341 0.0401 37 1 3.4485 11.3078 0.6073 38 1 4.9791 11.5039 -0.2798 39 1 3.0223 14.4821 -1.2099 40 1 5.9326 2.7250 1.0070 41 1 5.9816 1.6687 -0.4248 42 1 5.8879 3.4348 -0.6248 43 1 3.6234 -0.6405 -1.8330 44 1 5.1173 0.3271 -1.8320 45 1 5.1174 -1.3101 -1.1342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286130573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:33 Heat of formation + Delta-G solvation = -10.612489 kcal Electronic energy + Delta-G solvation = -29208.925555 eV Core-core repulsion = 25001.096967 eV Total energy + Delta-G solvation = -4207.828588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.34889 -41.77631 -40.55225 -39.28990 -37.76735 -36.37061 -35.32776 -33.24062 -32.90768 -31.36407 -30.90854 -29.15850 -28.32668 -28.26387 -27.02832 -25.39382 -24.44268 -23.01696 -22.51522 -21.64384 -20.98781 -19.27860 -18.69671 -18.67042 -18.30060 -17.93559 -17.31519 -17.10610 -16.87621 -16.51701 -16.17194 -16.11762 -15.84620 -15.60259 -15.42103 -14.76901 -14.55590 -14.51513 -14.31870 -14.07030 -13.94876 -13.78034 -13.65023 -13.22071 -13.15751 -12.92220 -12.87278 -12.71802 -12.68780 -12.29025 -12.07588 -12.03290 -11.97454 -11.58043 -11.39047 -11.11185 -10.72329 -10.62796 -9.84649 -9.74111 -9.38697 -9.06842 -8.32538 -6.46557 -0.34232 0.03401 1.04990 1.33395 1.38792 1.39351 1.50664 1.54134 2.10468 2.16170 2.28855 2.40214 2.54454 2.84439 2.99234 3.50676 3.64515 3.76274 3.92246 4.01313 4.19202 4.27194 4.33759 4.40672 4.41887 4.47133 4.47599 4.65420 4.74121 4.74819 4.79324 4.80740 4.87876 4.91404 4.94408 5.02163 5.04067 5.07064 5.25930 5.35848 5.45447 5.57292 5.80590 5.92664 6.04854 6.23434 6.30571 6.53091 6.65350 6.98641 7.09048 7.23321 8.75044 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017576 B = 0.002139 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.705983 B =13086.838516 C =14053.971593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.142 3.858 4 C -0.204 4.204 5 C -0.035 4.035 6 C -0.176 4.176 7 C 0.570 3.430 8 O -0.531 6.531 9 N -0.621 5.621 10 C 0.267 3.733 11 C -0.292 4.292 12 C 0.056 3.944 13 N -0.343 5.343 14 C 0.272 3.728 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.920 5.920 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.273 1.273 22 H -0.272 1.272 23 N -0.345 5.345 24 C -0.008 4.008 25 C -0.113 4.113 26 C 0.033 3.967 27 O -0.335 6.335 28 C 0.027 3.973 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.174 0.826 33 H 0.158 0.842 34 H 0.421 0.579 35 H 0.170 0.830 36 H 0.201 0.799 37 H 0.022 0.978 38 H 0.059 0.941 39 H 0.272 0.728 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -28.876 0.772 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.095 3.905 4 C -0.222 4.222 5 C -0.054 4.054 6 C -0.180 4.180 7 C 0.360 3.640 8 O -0.408 6.408 9 N -0.270 5.270 10 C 0.012 3.988 11 C -0.323 4.323 12 C -0.092 4.092 13 N -0.126 5.126 14 C 0.153 3.847 15 C -0.585 4.585 16 H 0.071 0.929 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.198 1.198 22 H -0.197 1.197 23 N -0.176 5.176 24 C -0.010 4.010 25 C -0.169 4.169 26 C -0.011 4.011 27 O -0.252 6.252 28 C -0.066 4.066 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.191 0.809 33 H 0.175 0.825 34 H 0.260 0.740 35 H 0.187 0.813 36 H 0.218 0.782 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.088 -28.227 0.894 28.536 hybrid contribution -0.388 0.449 -0.694 0.913 sum -4.476 -27.778 0.200 28.137 Atomic orbital electron populations 1.23517 0.75741 1.06085 1.02971 1.86126 1.23963 1.25784 1.87214 1.19805 0.91346 0.85956 0.93418 1.21375 1.01990 0.90216 1.08616 1.21418 0.92150 0.99275 0.92543 1.19229 0.94327 0.90671 1.13749 1.18389 0.86502 0.83500 0.75600 1.90657 1.14625 1.86569 1.48962 1.42405 1.11530 1.01196 1.71908 1.19373 0.92185 0.85991 1.01202 1.21745 0.95177 0.95648 1.19734 1.23177 0.92025 0.93600 1.00443 1.48842 1.03453 1.06964 1.53292 1.19341 0.98280 0.69695 0.97337 1.21393 1.37027 0.93277 1.06765 0.92930 1.25746 0.96497 0.95440 1.00590 1.69997 1.46761 1.00760 1.38404 0.85343 0.78745 0.77665 0.78637 1.19741 1.19761 1.19724 1.77250 1.15520 0.94692 1.30097 1.20131 0.97642 0.90174 0.93043 1.20950 0.89066 1.03239 1.03631 1.17698 0.87022 0.86239 1.10171 1.86093 1.70619 1.37783 1.30726 1.23212 1.00284 0.99389 0.83765 0.90866 0.86157 0.91046 0.80904 0.82477 0.73990 0.81258 0.78202 0.96035 0.92356 0.91852 0.90558 0.90852 0.89704 0.93289 0.93182 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -5.18 10.27 -77.36 -0.79 -5.97 16 3 C 0.14 2.62 6.71 22.69 0.15 2.77 16 4 C -0.20 -2.90 9.01 22.31 0.20 -2.70 16 5 C -0.04 -0.59 9.51 22.52 0.21 -0.38 16 6 C -0.18 -4.10 5.87 -20.09 -0.12 -4.21 16 7 C 0.57 16.65 7.66 86.71 0.66 17.32 16 8 O -0.53 -17.90 10.46 -4.02 -0.04 -17.94 16 9 N -0.62 -18.97 5.39 -310.33 -1.67 -20.64 16 10 C 0.27 10.61 8.11 133.35 1.08 11.69 16 11 C -0.29 -11.35 9.61 22.11 0.21 -11.14 16 12 C 0.06 2.20 11.44 83.52 0.96 3.16 16 13 N -0.34 -16.11 3.67 -351.86 -1.29 -17.40 16 14 C 0.27 14.09 6.26 85.63 0.54 14.63 16 15 C -0.55 -30.71 9.24 25.60 0.24 -30.48 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 0.97 5.46 84.66 0.46 1.43 16 18 N -0.92 -52.01 13.29 21.45 0.28 -51.72 16 19 Si 0.97 43.36 29.54 68.60 2.03 45.38 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 N -0.34 -15.93 12.42 -54.47 -0.68 -16.61 16 24 C -0.01 -0.20 5.92 -19.52 -0.12 -0.31 16 25 C -0.11 -2.65 8.56 71.24 0.61 -2.04 16 26 C 0.03 0.73 5.70 22.53 0.13 0.86 16 27 O -0.34 -7.28 9.33 -79.54 -0.74 -8.02 16 28 C 0.03 0.40 10.72 113.37 1.22 1.62 16 29 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 30 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.34 7.65 -2.38 -0.02 0.33 16 32 H 0.17 1.26 6.27 -2.91 -0.02 1.25 16 33 H 0.16 1.89 6.44 -2.91 -0.02 1.87 16 34 H 0.42 10.24 6.88 -92.71 -0.64 9.60 16 35 H 0.17 6.28 5.91 -2.91 -0.02 6.26 16 36 H 0.20 6.21 8.06 -2.91 -0.02 6.18 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 39 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.07 1.47 6.21 -2.39 -0.01 1.46 16 42 H 0.08 2.26 5.86 -2.39 -0.01 2.25 16 43 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.05 0.70 7.36 -2.39 -0.02 0.69 16 45 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.95 378.46 5.05 -67.90 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.41 Total: 21.62 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 7.55 Total: 3.40 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -3.36 Total: -106.37 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.58 Total: -31.93 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -72.95 5.05 -67.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286130573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.285 kcal (2) G-P(sol) polarization free energy of solvation -72.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds