Wall clock time and date at job start Wed Apr 1 2020 03:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35323 * 126.12575 * 2 1 4 4 C 1.39875 * 107.91690 * 180.26083 * 3 2 1 5 5 C 1.50695 * 125.89383 * 179.71437 * 4 3 2 6 6 F 1.39907 * 109.47021 * 185.00015 * 5 4 3 7 7 F 1.39900 * 109.47461 * 304.99751 * 5 4 3 8 8 F 1.39899 * 109.47452 * 65.00218 * 5 4 3 9 9 N 1.30835 * 108.20418 * 359.73551 * 4 3 2 10 10 N 1.34945 * 126.12998 * 179.80383 * 2 1 3 11 11 C 1.46501 * 126.03517 * 0.02562 * 10 2 1 12 12 C 1.50696 * 109.47035 * 269.71061 * 11 10 2 13 13 O 1.21284 * 120.00064 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00310 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00107 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47128 * 90.00402 * 15 14 12 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72498 * 16 15 14 19 19 N 1.31514 * 120.00481 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00365 * 20 18 16 22 22 H 1.48506 * 109.47294 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47275 * 330.00116 * 20 18 16 24 24 C 1.46497 * 119.99658 * 0.02562 * 14 12 11 25 25 C 1.53008 * 109.46926 * 269.99594 * 24 14 12 26 26 C 1.52995 * 117.49765 * 243.62387 * 25 24 14 27 27 C 1.52997 * 60.00108 * 252.51033 * 26 25 24 28 28 H 1.08990 * 109.47441 * 270.19011 * 1 2 3 29 29 H 1.09006 * 109.46897 * 30.19428 * 1 2 3 30 30 H 1.09006 * 109.46453 * 150.18953 * 1 2 3 31 31 H 1.07999 * 126.04293 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47155 * 149.71257 * 11 10 2 33 33 H 1.08997 * 109.47171 * 29.71388 * 11 10 2 34 34 H 1.09001 * 109.47786 * 330.00675 * 15 14 12 35 35 H 1.08998 * 109.47558 * 210.00538 * 15 14 12 36 36 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47569 * 29.99343 * 24 14 12 38 38 H 1.08997 * 109.47185 * 150.00014 * 24 14 12 39 39 H 1.09004 * 115.54514 * 29.33287 * 25 24 14 40 40 H 1.08995 * 117.50145 * 359.97438 * 26 25 24 41 41 H 1.08999 * 117.49978 * 145.02090 * 26 25 24 42 42 H 1.09000 * 117.49824 * 252.51694 * 27 26 25 43 43 H 1.09002 * 117.50089 * 107.48886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 -0.0061 5 6 4.8542 1.5395 -0.0143 6 9 6.0018 0.7483 -0.1336 7 9 4.7828 2.4236 -1.0962 8 9 4.9115 2.2670 1.1794 9 7 3.6334 -0.6524 -0.0038 10 7 2.3027 -1.0899 0.0037 11 6 1.8540 -2.4845 0.0080 12 6 1.7065 -2.9604 1.4302 13 8 1.9515 -2.2085 2.3498 14 7 1.3012 -4.2213 1.6804 15 6 1.1583 -4.6840 3.0630 16 6 -0.2430 -4.4069 3.5432 17 1 -0.9557 -3.9330 2.8844 18 6 -0.6168 -4.7629 4.8217 19 7 -1.8398 -4.5215 5.2406 20 14 0.6138 -5.5894 5.9584 21 1 1.3490 -4.5542 6.7286 22 1 -0.1054 -6.4873 6.8975 23 1 1.5758 -6.3837 5.1530 24 6 1.0047 -5.1293 0.5697 25 6 -0.4717 -5.0032 0.1881 26 6 -1.3570 -6.2372 0.3730 27 6 -0.9552 -5.7877 -1.0332 28 1 -0.3634 0.0034 1.0275 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3632 -0.8918 -0.5109 31 1 1.9741 2.1211 -0.0004 32 1 2.5876 -3.1038 -0.5081 33 1 0.8933 -2.5587 -0.5015 34 1 1.8707 -4.1573 3.6980 35 1 1.3532 -5.7554 3.1096 36 1 -2.1028 -4.7723 6.1399 37 1 1.6251 -4.8692 -0.2879 38 1 1.2152 -6.1549 0.8727 39 1 -0.9227 -4.0277 0.3706 40 1 -0.8877 -7.1390 0.7661 41 1 -2.3908 -6.0739 0.6773 42 1 -1.7246 -5.3286 -1.6539 43 1 -0.2215 -6.3937 -1.5649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290269834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:32 Heat of formation + Delta-G solvation = -72.414015 kcal Electronic energy + Delta-G solvation = -30871.413905 eV Core-core repulsion = 26119.048662 eV Total energy + Delta-G solvation = -4752.365244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.18511 -47.72041 -47.67199 -41.62430 -39.41953 -37.24382 -34.70312 -33.95325 -32.62558 -32.19922 -29.50364 -28.11632 -27.26154 -26.48949 -25.44653 -22.58328 -22.13501 -21.21309 -20.77957 -20.40359 -18.89319 -18.57637 -18.30903 -17.49871 -17.16985 -16.89859 -16.69223 -15.42865 -15.26187 -15.12846 -14.65318 -14.51954 -14.46284 -14.27700 -14.11319 -13.96461 -13.83197 -13.82777 -13.63241 -13.38813 -13.06385 -12.86057 -12.66744 -12.59806 -12.46845 -12.21207 -12.07223 -11.76110 -11.52854 -11.30705 -11.07888 -10.98394 -10.64087 -10.28684 -10.15302 -9.97867 -9.76782 -9.57096 -9.19786 -8.68510 -8.65097 -7.97683 -6.15425 -4.13842 1.47304 1.86501 2.27577 2.71483 2.93833 3.23370 3.28847 3.32416 3.48555 3.63665 3.90935 4.01380 4.33359 4.34171 4.49028 4.55293 4.57818 4.85182 4.95556 4.97812 5.07245 5.18039 5.23277 5.31658 5.40324 5.45070 5.49342 5.61640 5.71513 5.75884 5.82651 5.89020 6.12371 6.18854 6.31906 6.43120 6.53415 6.71474 6.81382 7.10665 7.28893 7.51344 7.93926 8.36422 8.63311 8.87353 9.44706 10.97608 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003239 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.886498 B = 8643.283600 C = 9761.309933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.111 3.889 3 C -0.238 4.238 4 C -0.020 4.020 5 C 0.558 3.442 6 F -0.169 7.169 7 F -0.170 7.170 8 F -0.167 7.167 9 N -0.231 5.231 10 N -0.329 5.329 11 C 0.107 3.893 12 C 0.493 3.507 13 O -0.517 6.517 14 N -0.584 5.584 15 C 0.217 3.783 16 C -0.522 4.522 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.896 5.896 20 Si 0.871 3.129 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.140 3.860 25 C -0.161 4.161 26 C -0.157 4.157 27 C -0.190 4.190 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 5.152 -16.784 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 C -0.267 4.267 4 C -0.186 4.186 5 C 0.502 3.498 6 F -0.150 7.150 7 F -0.151 7.151 8 F -0.148 7.148 9 N -0.054 5.054 10 N -0.112 5.112 11 C -0.018 4.018 12 C 0.277 3.723 13 O -0.392 6.392 14 N -0.315 5.315 15 C 0.097 3.903 16 C -0.560 4.560 17 H 0.095 0.905 18 C -0.128 4.128 19 N -0.534 5.534 20 Si 0.699 3.301 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.192 1.192 24 C 0.016 3.984 25 C -0.180 4.180 26 C -0.194 4.194 27 C -0.227 4.227 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.176 0.824 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.288 4.348 -16.094 17.818 hybrid contribution 0.063 0.213 0.851 0.879 sum 6.351 4.562 -15.243 17.132 Atomic orbital electron populations 1.20566 0.86266 1.03940 1.04717 1.21153 0.95285 0.86153 0.98952 1.20797 0.89520 0.99872 1.16483 1.21837 0.94260 0.93168 1.09380 1.16872 0.81137 0.77873 0.73944 1.93227 1.52237 1.73901 1.95637 1.93216 1.96372 1.69979 1.55542 1.93244 1.96496 1.78501 1.46597 1.77316 0.97557 1.10104 1.20442 1.48038 1.02921 1.05626 1.54583 1.21834 1.03151 0.78539 0.98275 1.20285 0.79111 0.82941 0.89991 1.90769 1.49434 1.53495 1.45495 1.47883 1.64456 1.10514 1.08672 1.19745 0.98679 0.94586 0.77259 1.21217 0.95194 1.40390 0.99243 0.90516 1.24808 0.95045 0.95373 0.97573 1.69873 1.17680 1.47505 1.18370 0.86930 0.81730 0.80010 0.81480 1.19969 1.21037 1.19163 1.21145 0.93257 0.95191 0.88799 1.22708 0.95962 0.97867 1.01486 1.22865 1.00834 0.98192 0.97469 1.22999 1.03753 1.04673 0.91305 0.88890 0.89139 0.90770 0.82373 0.85850 0.85622 0.94586 0.95053 0.92563 0.91179 0.89933 0.87674 0.88839 0.88800 0.89176 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.12 36.01 0.36 -0.64 16 2 C 0.11 1.52 6.93 -82.26 -0.57 0.95 16 3 C -0.24 -3.20 10.65 -40.01 -0.43 -3.62 16 4 C -0.02 -0.30 6.51 -82.41 -0.54 -0.84 16 5 C 0.56 7.55 3.51 36.00 0.13 7.67 16 6 F -0.17 -2.39 17.14 2.25 0.04 -2.35 16 7 F -0.17 -2.05 17.30 2.25 0.04 -2.01 16 8 F -0.17 -2.30 17.30 2.25 0.04 -2.26 16 9 N -0.23 -3.86 12.35 33.67 0.42 -3.44 16 10 N -0.33 -5.01 3.10 -58.31 -0.18 -5.19 16 11 C 0.11 1.42 5.28 -5.20 -0.03 1.39 16 12 C 0.49 9.17 7.74 -10.98 -0.09 9.08 16 13 O -0.52 -12.32 16.01 5.55 0.09 -12.23 16 14 N -0.58 -10.69 2.46 -175.06 -0.43 -11.12 16 15 C 0.22 4.97 4.27 -5.19 -0.02 4.95 16 16 C -0.52 -13.93 9.94 -34.44 -0.34 -14.27 16 17 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -26.51 13.96 55.43 0.77 -25.73 16 20 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 24 C 0.14 1.87 5.54 -4.04 -0.02 1.85 16 25 C -0.16 -2.13 5.94 -90.62 -0.54 -2.67 16 26 C -0.16 -2.11 10.18 -26.74 -0.27 -2.38 16 27 C -0.19 -1.96 10.25 -26.73 -0.27 -2.23 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.66 7.08 -51.93 -0.37 0.30 16 31 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.12 1.33 7.40 -51.93 -0.38 0.94 16 33 H 0.13 1.27 6.93 -51.93 -0.36 0.91 16 34 H 0.04 0.91 6.86 -51.93 -0.36 0.55 16 35 H 0.03 0.69 6.93 -51.93 -0.36 0.33 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 0.68 6.44 -51.93 -0.33 0.35 16 38 H 0.08 1.07 7.63 -51.93 -0.40 0.68 16 39 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.24 8.03 -51.93 -0.42 0.83 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -34.27 380.72 -6.40 -40.67 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.53 Total: 0.41 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.72 Total: 1.21 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.58 Total: -45.49 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.12 Total: -6.63 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.27 -6.40 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290269834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.746 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds