Wall clock time and date at job start Wed Apr 1 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35323 * 126.12575 * 2 1 4 4 C 1.39875 * 107.91690 * 180.26083 * 3 2 1 5 5 C 1.50695 * 125.89383 * 179.71437 * 4 3 2 6 6 F 1.39907 * 109.47021 * 185.00015 * 5 4 3 7 7 F 1.39900 * 109.47461 * 304.99751 * 5 4 3 8 8 F 1.39899 * 109.47452 * 65.00218 * 5 4 3 9 9 N 1.30835 * 108.20418 * 359.73551 * 4 3 2 10 10 N 1.34945 * 126.12998 * 179.80383 * 2 1 3 11 11 C 1.46501 * 126.03517 * 0.02562 * 10 2 1 12 12 C 1.50696 * 109.47035 * 269.71061 * 11 10 2 13 13 O 1.21284 * 120.00064 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00310 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00107 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47128 * 90.00402 * 15 14 12 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72498 * 16 15 14 19 19 N 1.31514 * 120.00481 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00365 * 20 18 16 22 22 H 1.48506 * 109.47294 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47275 * 330.00116 * 20 18 16 24 24 C 1.46497 * 119.99658 * 0.02562 * 14 12 11 25 25 C 1.53008 * 109.46926 * 269.99594 * 24 14 12 26 26 C 1.52995 * 117.49765 * 243.62387 * 25 24 14 27 27 C 1.52997 * 60.00108 * 252.51033 * 26 25 24 28 28 H 1.08990 * 109.47441 * 270.19011 * 1 2 3 29 29 H 1.09006 * 109.46897 * 30.19428 * 1 2 3 30 30 H 1.09006 * 109.46453 * 150.18953 * 1 2 3 31 31 H 1.07999 * 126.04293 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47155 * 149.71257 * 11 10 2 33 33 H 1.08997 * 109.47171 * 29.71388 * 11 10 2 34 34 H 1.09001 * 109.47786 * 330.00675 * 15 14 12 35 35 H 1.08998 * 109.47558 * 210.00538 * 15 14 12 36 36 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47569 * 29.99343 * 24 14 12 38 38 H 1.08997 * 109.47185 * 150.00014 * 24 14 12 39 39 H 1.09004 * 115.54514 * 29.33287 * 25 24 14 40 40 H 1.08995 * 117.50145 * 359.97438 * 26 25 24 41 41 H 1.08999 * 117.49978 * 145.02090 * 26 25 24 42 42 H 1.09000 * 117.49824 * 252.51694 * 27 26 25 43 43 H 1.09002 * 117.50089 * 107.48886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 -0.0061 5 6 4.8542 1.5395 -0.0143 6 9 6.0018 0.7483 -0.1336 7 9 4.7828 2.4236 -1.0962 8 9 4.9115 2.2670 1.1794 9 7 3.6334 -0.6524 -0.0038 10 7 2.3027 -1.0899 0.0037 11 6 1.8540 -2.4845 0.0080 12 6 1.7065 -2.9604 1.4302 13 8 1.9515 -2.2085 2.3498 14 7 1.3012 -4.2213 1.6804 15 6 1.1583 -4.6840 3.0630 16 6 -0.2430 -4.4069 3.5432 17 1 -0.9557 -3.9330 2.8844 18 6 -0.6168 -4.7629 4.8217 19 7 -1.8398 -4.5215 5.2406 20 14 0.6138 -5.5894 5.9584 21 1 1.3490 -4.5542 6.7286 22 1 -0.1054 -6.4873 6.8975 23 1 1.5758 -6.3837 5.1530 24 6 1.0047 -5.1293 0.5697 25 6 -0.4717 -5.0032 0.1881 26 6 -1.3570 -6.2372 0.3730 27 6 -0.9552 -5.7877 -1.0332 28 1 -0.3634 0.0034 1.0275 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3632 -0.8918 -0.5109 31 1 1.9741 2.1211 -0.0004 32 1 2.5876 -3.1038 -0.5081 33 1 0.8933 -2.5587 -0.5015 34 1 1.8707 -4.1573 3.6980 35 1 1.3532 -5.7554 3.1096 36 1 -2.1028 -4.7723 6.1399 37 1 1.6251 -4.8692 -0.2879 38 1 1.2152 -6.1549 0.8727 39 1 -0.9227 -4.0277 0.3706 40 1 -0.8877 -7.1390 0.7661 41 1 -2.3908 -6.0739 0.6773 42 1 -1.7246 -5.3286 -1.6539 43 1 -0.2215 -6.3937 -1.5649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290269834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:31 Heat of formation + Delta-G solvation = -93.679436 kcal Electronic energy + Delta-G solvation = -30872.336043 eV Core-core repulsion = 26119.048662 eV Total energy + Delta-G solvation = -4753.287381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.24966 -48.76846 -48.75127 -42.70616 -40.83083 -38.39130 -36.19432 -35.12139 -34.56398 -33.25495 -31.04749 -29.47051 -28.21009 -27.73894 -26.71853 -24.31783 -23.08346 -22.29502 -21.96890 -21.50661 -20.20817 -19.63689 -19.39439 -19.04602 -18.53888 -18.37552 -17.91588 -16.88680 -16.53799 -16.30305 -16.01183 -15.74262 -15.58107 -15.49868 -15.17622 -15.14317 -14.90307 -14.89425 -14.80558 -14.63888 -14.41737 -14.24692 -13.85890 -13.73040 -13.67790 -13.47330 -13.34797 -13.02752 -12.98366 -12.62685 -12.53658 -12.23322 -12.06044 -12.00661 -11.67827 -11.38142 -11.16306 -10.83272 -10.71038 -10.48086 -9.78220 -9.54193 -8.31379 -6.33273 0.34948 0.82110 1.23064 1.29743 1.34186 1.40099 1.54103 1.65711 2.16619 2.29917 2.55105 2.85396 3.02559 3.03366 3.28266 3.37467 3.50693 3.62520 3.89954 3.95163 4.05582 4.13937 4.26182 4.31497 4.43911 4.47129 4.56972 4.64410 4.70718 4.84737 4.89501 4.90145 4.93188 5.00605 5.10649 5.17944 5.33554 5.39496 5.46474 5.56939 5.72418 6.19764 6.24928 6.52317 6.68169 7.15448 7.31410 8.84747 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003239 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.886498 B = 8643.283600 C = 9761.309933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.104 3.896 3 C -0.243 4.243 4 C -0.031 4.031 5 C 0.564 3.436 6 F -0.174 7.174 7 F -0.159 7.159 8 F -0.170 7.170 9 N -0.266 5.266 10 N -0.339 5.339 11 C 0.115 3.885 12 C 0.487 3.513 13 O -0.581 6.581 14 N -0.586 5.586 15 C 0.225 3.775 16 C -0.514 4.514 17 H 0.041 0.959 18 C 0.016 3.984 19 N -0.943 5.943 20 Si 0.932 3.068 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.240 1.240 24 C 0.134 3.866 25 C -0.175 4.175 26 C -0.189 4.189 27 C -0.141 4.141 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.011 0.989 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 4.337 -19.498 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.022 4.022 3 C -0.272 4.272 4 C -0.197 4.197 5 C 0.508 3.492 6 F -0.155 7.155 7 F -0.141 7.141 8 F -0.151 7.151 9 N -0.090 5.090 10 N -0.122 5.122 11 C -0.008 4.008 12 C 0.273 3.727 13 O -0.461 6.461 14 N -0.316 5.316 15 C 0.102 3.898 16 C -0.552 4.552 17 H 0.060 0.940 18 C -0.182 4.182 19 N -0.583 5.583 20 Si 0.756 3.244 21 H -0.210 1.210 22 H -0.203 1.203 23 H -0.163 1.163 24 C 0.013 3.987 25 C -0.195 4.195 26 C -0.226 4.226 27 C -0.179 4.179 28 H 0.089 0.911 29 H 0.141 0.859 30 H 0.109 0.891 31 H 0.201 0.799 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.200 3.501 -18.871 20.499 hybrid contribution -0.296 0.527 1.653 1.760 sum 6.904 4.028 -17.218 18.983 Atomic orbital electron populations 1.20685 0.84187 1.06461 1.03928 1.21743 0.96633 0.85898 0.97970 1.21219 0.88884 1.01239 1.15854 1.22144 0.95332 0.93123 1.09135 1.16739 0.80649 0.77780 0.74071 1.93213 1.52487 1.74143 1.95670 1.93233 1.96297 1.69551 1.54972 1.93236 1.96478 1.78508 1.46900 1.77226 0.98815 1.10999 1.21961 1.48230 1.02710 1.06455 1.54796 1.21991 1.06004 0.78373 0.94474 1.21232 0.77410 0.82192 0.91824 1.90735 1.52149 1.55166 1.48023 1.47906 1.64019 1.11533 1.08167 1.19373 0.95297 0.95134 0.79947 1.21415 0.96397 1.38791 0.98638 0.94029 1.25653 0.96731 0.96432 0.99413 1.70016 1.19815 1.49555 1.18943 0.85951 0.79767 0.79071 0.79575 1.21016 1.20327 1.16302 1.21536 0.94040 0.94617 0.88549 1.22607 0.95700 0.96706 1.04446 1.22885 0.99798 0.98544 1.01352 1.23082 1.03340 1.01972 0.89470 0.91111 0.85914 0.89102 0.79880 0.82566 0.81990 0.97076 0.93279 0.92582 0.86364 0.89267 0.89883 0.88937 0.91159 0.87752 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 10.12 71.24 0.72 -1.08 16 2 C 0.10 2.69 6.93 41.41 0.29 2.98 16 3 C -0.24 -6.20 10.65 21.99 0.23 -5.97 16 4 C -0.03 -0.92 6.51 43.10 0.28 -0.64 16 5 C 0.56 14.82 3.51 71.23 0.25 15.07 16 6 F -0.17 -4.84 17.14 44.97 0.77 -4.07 16 7 F -0.16 -3.63 17.30 44.97 0.78 -2.85 16 8 F -0.17 -4.59 17.30 44.97 0.78 -3.82 16 9 N -0.27 -8.67 12.35 -47.39 -0.59 -9.26 16 10 N -0.34 -9.79 3.10 -338.41 -1.05 -10.84 16 11 C 0.12 2.77 5.28 85.63 0.45 3.22 16 12 C 0.49 17.79 7.74 87.65 0.68 18.47 16 13 O -0.58 -28.38 16.01 -3.04 -0.05 -28.43 16 14 N -0.59 -20.90 2.46 -826.15 -2.03 -22.93 16 15 C 0.22 10.28 4.27 85.64 0.37 10.65 16 16 C -0.51 -28.23 9.94 25.60 0.25 -27.97 16 17 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 18 C 0.02 0.89 5.47 84.65 0.46 1.36 16 19 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 20 Si 0.93 43.76 27.47 68.60 1.88 45.64 16 21 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.24 -10.09 6.53 99.48 0.65 -9.44 16 24 C 0.13 3.19 5.54 86.38 0.48 3.67 16 25 C -0.18 -4.31 5.94 -10.79 -0.06 -4.37 16 26 C -0.19 -4.92 10.18 30.59 0.31 -4.61 16 27 C -0.14 -2.37 10.25 30.59 0.31 -2.06 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.09 1.39 7.08 -2.38 -0.02 1.37 16 31 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.16 2.70 7.40 -2.39 -0.02 2.68 16 33 H 0.16 2.66 6.93 -2.39 -0.02 2.64 16 34 H 0.01 0.57 6.86 -2.39 -0.02 0.55 16 35 H 0.05 2.08 6.93 -2.39 -0.02 2.06 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.12 1.68 6.44 -2.39 -0.02 1.67 16 38 H 0.09 2.03 7.63 -2.39 -0.02 2.01 16 39 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.09 2.38 8.03 -2.39 -0.02 2.36 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -80.14 380.72 6.82 -73.33 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.99 Total: 11.99 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.03 Total: 8.71 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -3.36 Total: -100.49 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 9 Polarization: -13.07 SS G_CDS: 2.33 Total: -10.74 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -80.14 6.82 -73.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290269834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.353 kcal (2) G-P(sol) polarization free energy of solvation -80.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds