Wall clock time and date at job start Wed Apr 1 2020 04:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 C 1.50697 * 110.53097 * 187.12906 * 3 2 1 5 5 C 1.38236 * 120.00231 * 327.59907 * 4 3 2 6 6 C 1.38230 * 120.00005 * 179.74979 * 5 4 3 7 7 C 1.38238 * 120.00201 * 0.54636 * 6 5 4 8 8 C 1.38238 * 119.99423 * 359.70571 * 7 6 5 9 9 C 1.38223 * 120.00325 * 0.02562 * 8 7 6 10 10 N 1.47309 * 110.73238 * 310.05052 * 3 2 1 11 11 C 1.34525 * 106.62016 * 118.36620 * 10 3 2 12 12 O 1.21534 * 123.77220 * 180.20237 * 11 10 3 13 13 N 1.33786 * 112.45666 * 0.38598 * 11 10 3 14 14 N 1.40110 * 124.17958 * 179.86344 * 13 11 10 15 15 C 1.34777 * 119.99805 * 284.69980 * 14 13 11 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00104 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47175 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46843 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00516 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99783 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99956 * 180.27458 * 21 19 18 24 24 H 1.48497 * 109.47172 * 179.72730 * 23 21 19 25 25 H 1.48506 * 109.47132 * 299.72429 * 23 21 19 26 26 H 1.48501 * 109.47173 * 59.72550 * 23 21 19 27 27 C 1.34771 * 111.64580 * 359.59055 * 13 11 10 28 28 O 1.21233 * 127.15677 * 180.26802 * 27 13 11 29 29 H 1.08991 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47017 * 300.00124 * 1 2 3 31 31 H 1.09003 * 109.46571 * 59.99753 * 1 2 3 32 32 H 1.08992 * 109.46812 * 239.99904 * 2 1 3 33 33 H 1.09003 * 109.46571 * 120.00247 * 2 1 3 34 34 H 1.08005 * 119.99869 * 359.97438 * 5 4 3 35 35 H 1.08004 * 120.00416 * 180.27189 * 6 5 4 36 36 H 1.07998 * 120.00018 * 179.72783 * 7 6 5 37 37 H 1.07995 * 119.99349 * 180.02562 * 8 7 6 38 38 H 1.08004 * 120.00423 * 179.97438 * 9 8 7 39 39 H 0.97002 * 126.68851 * 298.55638 * 10 3 2 40 40 H 0.96990 * 119.99880 * 104.69744 * 14 13 11 41 41 H 1.09006 * 109.46887 * 59.99757 * 17 15 14 42 42 H 1.08997 * 109.46876 * 299.99806 * 17 15 14 43 43 H 1.09001 * 109.46361 * 60.00344 * 18 17 15 44 44 H 1.08997 * 109.46991 * 300.00234 * 18 17 15 45 45 H 0.97005 * 119.99656 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5365 1.4740 -0.1751 5 6 4.3141 0.4523 0.3370 6 6 5.6862 0.4786 0.1719 7 6 6.2820 1.5324 -0.4957 8 6 5.5048 2.5568 -1.0033 9 6 4.1322 2.5276 -0.8430 10 7 1.3781 2.2297 -1.0546 11 6 0.7090 3.2182 -0.4342 12 8 0.0464 4.0543 -1.0163 13 7 0.8579 3.1804 0.8948 14 7 0.2706 4.0949 1.7789 15 6 0.7733 5.3403 1.8925 16 8 1.7343 5.6690 1.2297 17 6 0.1413 6.3241 2.8430 18 6 0.8984 7.6523 2.7803 19 6 0.2667 8.6359 3.7313 20 1 -0.5893 8.3433 4.3212 21 6 0.7811 9.9099 3.8476 22 7 1.8226 10.2667 3.1281 23 14 0.0029 11.1268 5.0320 24 1 0.7405 12.4143 4.9745 25 1 -1.4148 11.3511 4.6508 26 1 0.0642 10.5824 6.4123 27 6 1.6377 2.1504 1.2786 28 8 1.9515 1.8517 2.4109 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8491 -0.3684 0.8631 35 1 6.2934 -0.3219 0.5682 36 1 7.3544 1.5551 -0.6209 37 1 5.9702 3.3798 -1.5252 38 1 3.5251 3.3282 -1.2392 39 1 1.4150 2.0654 -2.0099 40 1 -0.4977 3.8318 2.3092 41 1 0.1856 5.9286 3.8579 42 1 -0.8991 6.4849 2.5608 43 1 0.8543 8.0478 1.7655 44 1 1.9387 7.4911 3.0627 45 1 2.1842 11.1631 3.2097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290866226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:23 Heat of formation + Delta-G solvation = -17.379756 kcal Electronic energy + Delta-G solvation = -30633.271362 eV Core-core repulsion = 26425.149323 eV Total energy + Delta-G solvation = -4208.122039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.96840 -39.74089 -38.93847 -38.72117 -36.75245 -35.76554 -33.53386 -33.34988 -31.85111 -31.43122 -31.07830 -30.54103 -27.14049 -25.89228 -24.03857 -23.23315 -23.05557 -22.32239 -21.35622 -20.53418 -20.10663 -18.62803 -17.80106 -17.34134 -17.18524 -16.42583 -16.30281 -15.97799 -15.68448 -15.35214 -15.04489 -14.82600 -14.61831 -14.45939 -14.25141 -14.04996 -13.95971 -13.66763 -13.56421 -13.04517 -12.49667 -12.38234 -12.24054 -12.18079 -11.78413 -11.54474 -11.37668 -11.25881 -11.09948 -10.92675 -10.74232 -10.65112 -10.44277 -10.02222 -9.86659 -9.76806 -9.46554 -9.32216 -9.20755 -9.14745 -9.05773 -8.33500 -5.97317 -4.02342 0.77845 1.11467 1.30380 1.41917 2.65471 2.83739 3.00386 3.30178 3.35121 3.39647 3.41337 3.67802 3.80219 3.93024 4.14749 4.46884 4.63391 4.68430 4.71942 4.77737 4.87658 5.07150 5.12237 5.18647 5.29956 5.30744 5.37807 5.40401 5.49766 5.59334 5.72239 5.73699 6.09010 6.10493 6.11053 6.16981 6.22406 6.23555 6.51376 6.64817 6.70938 6.76098 7.19620 7.38513 7.70946 7.79850 7.91899 8.03195 8.33790 8.57482 9.04784 9.61242 11.13591 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.002778 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.393786 B =10078.151622 C =11018.264827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C 0.180 3.820 4 C -0.103 4.103 5 C -0.092 4.092 6 C -0.122 4.122 7 C -0.107 4.107 8 C -0.116 4.116 9 C -0.091 4.091 10 N -0.713 5.713 11 C 0.708 3.292 12 O -0.519 6.519 13 N -0.376 5.376 14 N -0.517 5.517 15 C 0.517 3.483 16 O -0.507 6.507 17 C -0.115 4.115 18 C 0.038 3.962 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.895 3.105 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.276 1.276 27 C 0.536 3.464 28 O -0.448 6.448 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.442 0.558 40 H 0.423 0.577 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.027 0.973 44 H 0.025 0.975 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -27.440 -9.177 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.155 4.155 3 C 0.087 3.913 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.140 4.140 7 C -0.125 4.125 8 C -0.134 4.134 9 C -0.109 4.109 10 N -0.380 5.380 11 C 0.408 3.592 12 O -0.389 6.389 13 N -0.210 5.210 14 N -0.271 5.271 15 C 0.305 3.695 16 O -0.376 6.376 17 C -0.156 4.156 18 C 0.000 4.000 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.723 3.277 24 H -0.213 1.213 25 H -0.202 1.202 26 H -0.202 1.202 27 C 0.322 3.678 28 O -0.314 6.314 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.288 0.712 40 H 0.265 0.735 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.115 -26.630 -9.300 28.379 hybrid contribution -0.685 0.600 0.472 1.026 sum 2.430 -26.030 -8.828 27.593 Atomic orbital electron populations 1.21854 0.94280 1.02990 1.02573 1.21858 0.97241 0.91349 1.05002 1.20130 0.91720 0.94258 0.85156 1.19367 0.91486 0.97178 1.02438 1.20997 0.93900 0.97815 0.98315 1.21142 0.94464 0.98910 0.99437 1.21298 1.00135 0.93972 0.97080 1.21198 0.93437 0.98820 0.99985 1.21088 0.95378 0.96923 0.97550 1.45473 1.52890 1.30326 1.09267 1.15756 0.80434 0.82175 0.80802 1.91057 1.42545 1.38125 1.67176 1.45063 1.46484 1.24683 1.04736 1.45846 1.34416 1.07501 1.39333 1.22496 0.83847 0.79799 0.83321 1.90712 1.26444 1.76118 1.44354 1.21950 1.01615 0.95724 0.96332 1.18957 0.95462 0.87350 0.98237 1.21126 1.14856 0.96933 1.23798 0.92413 1.25023 0.94991 0.98344 0.95965 1.69990 1.23041 1.19562 1.40109 0.86613 0.79316 0.80364 0.81409 1.21283 1.20194 1.20188 1.21034 0.76485 0.79608 0.90691 1.90799 1.52807 1.66742 1.21034 0.91084 0.92876 0.91678 0.88908 0.88860 0.85248 0.85478 0.85662 0.85412 0.85587 0.71202 0.73505 0.89193 0.89117 0.95500 0.95619 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.36 37.16 0.35 -0.69 16 2 C -0.12 -0.74 4.48 -26.73 -0.12 -0.86 16 3 C 0.18 1.79 0.95 -133.25 -0.13 1.66 16 4 C -0.10 -1.06 4.93 -104.62 -0.52 -1.58 16 5 C -0.09 -0.80 9.18 -39.59 -0.36 -1.16 16 6 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 7 C -0.11 -0.92 10.05 -39.58 -0.40 -1.31 16 8 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 9 C -0.09 -1.04 9.35 -39.59 -0.37 -1.41 16 10 N -0.71 -7.22 3.66 -54.03 -0.20 -7.42 16 11 C 0.71 10.66 8.42 -88.03 -0.74 9.92 16 12 O -0.52 -9.79 17.91 5.34 0.10 -9.69 16 13 N -0.38 -5.81 2.93 -15.79 -0.05 -5.85 16 14 N -0.52 -8.36 6.00 31.22 0.19 -8.17 16 15 C 0.52 10.56 7.88 -10.99 -0.09 10.47 16 16 O -0.51 -12.59 16.19 5.55 0.09 -12.50 16 17 C -0.11 -2.32 5.64 -27.88 -0.16 -2.48 16 18 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 19 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 23 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.54 7.48 6.18 -10.55 -0.07 7.41 16 28 O -0.45 -7.12 18.01 5.60 0.10 -7.02 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.42 7.42 -51.93 -0.39 0.04 16 31 H 0.06 0.44 7.43 -51.93 -0.39 0.05 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.55 7.01 -51.93 -0.36 0.19 16 34 H 0.13 0.85 6.51 -52.48 -0.34 0.51 16 35 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.57 7.31 -52.48 -0.38 1.19 16 39 H 0.44 3.20 8.96 -40.82 -0.37 2.83 16 40 H 0.42 5.13 8.83 -182.60 -1.61 3.52 16 41 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.03 0.80 8.10 -51.93 -0.42 0.37 16 44 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -38.99 386.67 -9.33 -48.32 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.18 Total: 2.29 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -3.92 Total: 4.28 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.68 Total: -48.20 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: 0.29 Total: -29.22 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.99 -9.33 -48.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290866226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.944 kcal (2) G-P(sol) polarization free energy of solvation -38.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds