Wall clock time and date at job start Wed Apr 1 2020 04:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 C 1.50697 * 110.53097 * 187.12906 * 3 2 1 5 5 C 1.38236 * 120.00231 * 327.59907 * 4 3 2 6 6 C 1.38230 * 120.00005 * 179.74979 * 5 4 3 7 7 C 1.38238 * 120.00201 * 0.54636 * 6 5 4 8 8 C 1.38238 * 119.99423 * 359.70571 * 7 6 5 9 9 C 1.38223 * 120.00325 * 0.02562 * 8 7 6 10 10 N 1.47309 * 110.73238 * 310.05052 * 3 2 1 11 11 C 1.34525 * 106.62016 * 118.36620 * 10 3 2 12 12 O 1.21534 * 123.77220 * 180.20237 * 11 10 3 13 13 N 1.33786 * 112.45666 * 0.38598 * 11 10 3 14 14 N 1.40110 * 124.17958 * 179.86344 * 13 11 10 15 15 C 1.34777 * 119.99805 * 284.69980 * 14 13 11 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00104 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47175 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46843 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00516 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99783 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99956 * 180.27458 * 21 19 18 24 24 H 1.48497 * 109.47172 * 179.72730 * 23 21 19 25 25 H 1.48506 * 109.47132 * 299.72429 * 23 21 19 26 26 H 1.48501 * 109.47173 * 59.72550 * 23 21 19 27 27 C 1.34771 * 111.64580 * 359.59055 * 13 11 10 28 28 O 1.21233 * 127.15677 * 180.26802 * 27 13 11 29 29 H 1.08991 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47017 * 300.00124 * 1 2 3 31 31 H 1.09003 * 109.46571 * 59.99753 * 1 2 3 32 32 H 1.08992 * 109.46812 * 239.99904 * 2 1 3 33 33 H 1.09003 * 109.46571 * 120.00247 * 2 1 3 34 34 H 1.08005 * 119.99869 * 359.97438 * 5 4 3 35 35 H 1.08004 * 120.00416 * 180.27189 * 6 5 4 36 36 H 1.07998 * 120.00018 * 179.72783 * 7 6 5 37 37 H 1.07995 * 119.99349 * 180.02562 * 8 7 6 38 38 H 1.08004 * 120.00423 * 179.97438 * 9 8 7 39 39 H 0.97002 * 126.68851 * 298.55638 * 10 3 2 40 40 H 0.96990 * 119.99880 * 104.69744 * 14 13 11 41 41 H 1.09006 * 109.46887 * 59.99757 * 17 15 14 42 42 H 1.08997 * 109.46876 * 299.99806 * 17 15 14 43 43 H 1.09001 * 109.46361 * 60.00344 * 18 17 15 44 44 H 1.08997 * 109.46991 * 300.00234 * 18 17 15 45 45 H 0.97005 * 119.99656 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5365 1.4740 -0.1751 5 6 4.3141 0.4523 0.3370 6 6 5.6862 0.4786 0.1719 7 6 6.2820 1.5324 -0.4957 8 6 5.5048 2.5568 -1.0033 9 6 4.1322 2.5276 -0.8430 10 7 1.3781 2.2297 -1.0546 11 6 0.7090 3.2182 -0.4342 12 8 0.0464 4.0543 -1.0163 13 7 0.8579 3.1804 0.8948 14 7 0.2706 4.0949 1.7789 15 6 0.7733 5.3403 1.8925 16 8 1.7343 5.6690 1.2297 17 6 0.1413 6.3241 2.8430 18 6 0.8984 7.6523 2.7803 19 6 0.2667 8.6359 3.7313 20 1 -0.5893 8.3433 4.3212 21 6 0.7811 9.9099 3.8476 22 7 1.8226 10.2667 3.1281 23 14 0.0029 11.1268 5.0320 24 1 0.7405 12.4143 4.9745 25 1 -1.4148 11.3511 4.6508 26 1 0.0642 10.5824 6.4123 27 6 1.6377 2.1504 1.2786 28 8 1.9515 1.8517 2.4109 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8491 -0.3684 0.8631 35 1 6.2934 -0.3219 0.5682 36 1 7.3544 1.5551 -0.6209 37 1 5.9702 3.3798 -1.5252 38 1 3.5251 3.3282 -1.2392 39 1 1.4150 2.0654 -2.0099 40 1 -0.4977 3.8318 2.3092 41 1 0.1856 5.9286 3.8579 42 1 -0.8991 6.4849 2.5608 43 1 0.8543 8.0478 1.7655 44 1 1.9387 7.4911 3.0627 45 1 2.1842 11.1631 3.2097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290866226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:22 Heat of formation + Delta-G solvation = -45.210977 kcal Electronic energy + Delta-G solvation = -30634.478215 eV Core-core repulsion = 26425.149323 eV Total energy + Delta-G solvation = -4209.328891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.05901 -40.97541 -40.19971 -39.83368 -37.81443 -37.10507 -35.63484 -34.35545 -33.32459 -32.39325 -32.07644 -31.72413 -28.16719 -27.66712 -24.99642 -24.81473 -23.85993 -23.04067 -22.87324 -21.72894 -21.44360 -19.80970 -19.10661 -18.63800 -18.41923 -17.94857 -17.35115 -17.17194 -16.93444 -16.55004 -16.48754 -16.25711 -15.87167 -15.61103 -15.40263 -14.97434 -14.81709 -14.72942 -14.39148 -14.38312 -14.27009 -13.79886 -13.34916 -12.94525 -12.80411 -12.78182 -12.67697 -12.53033 -12.28927 -12.20824 -12.00631 -11.98816 -11.83918 -11.80360 -11.72683 -11.37401 -11.02488 -10.86401 -10.71833 -10.56613 -9.93014 -9.86344 -8.19450 -6.33933 -0.17264 0.20771 0.38122 0.40226 1.30509 1.42482 1.47279 1.54792 1.67216 1.77331 2.31361 2.43184 2.61572 2.92579 3.07424 3.13990 3.44268 3.73330 3.94503 4.00590 4.05224 4.17457 4.26170 4.28336 4.36531 4.44655 4.50725 4.54436 4.69440 4.86027 4.89673 4.95429 4.97404 4.98231 5.05097 5.25116 5.39838 5.44626 5.46317 5.53021 5.54174 5.55113 5.65710 5.80688 5.96280 5.98500 6.05426 6.13177 6.68392 6.84209 7.12729 7.36370 8.93266 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.002778 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.393786 B =10078.151622 C =11018.264827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C 0.191 3.809 4 C -0.116 4.116 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.108 4.108 8 C -0.134 4.134 9 C -0.117 4.117 10 N -0.686 5.686 11 C 0.704 3.296 12 O -0.565 6.565 13 N -0.385 5.385 14 N -0.504 5.504 15 C 0.519 3.481 16 O -0.563 6.563 17 C -0.104 4.104 18 C 0.043 3.957 19 C -0.543 4.543 20 H 0.082 0.918 21 C -0.007 4.007 22 N -0.938 5.938 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.262 1.262 26 H -0.261 1.261 27 C 0.530 3.470 28 O -0.469 6.469 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.456 0.544 40 H 0.443 0.557 41 H 0.122 0.878 42 H 0.120 0.880 43 H -0.018 1.018 44 H -0.016 1.016 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -30.467 -7.964 31.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.148 4.148 3 C 0.099 3.901 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.137 4.137 7 C -0.126 4.126 8 C -0.152 4.152 9 C -0.135 4.135 10 N -0.353 5.353 11 C 0.404 3.596 12 O -0.439 6.439 13 N -0.219 5.219 14 N -0.258 5.258 15 C 0.308 3.692 16 O -0.437 6.437 17 C -0.145 4.145 18 C 0.005 3.995 19 C -0.581 4.581 20 H 0.100 0.900 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.800 3.200 24 H -0.215 1.215 25 H -0.186 1.186 26 H -0.185 1.185 27 C 0.317 3.683 28 O -0.336 6.336 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.305 0.695 40 H 0.290 0.710 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.001 0.999 44 H 0.003 0.997 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.454 -29.756 -8.081 30.932 hybrid contribution -0.389 1.446 0.059 1.498 sum 2.064 -28.311 -8.022 29.498 Atomic orbital electron populations 1.21886 0.94305 1.04181 1.01446 1.21995 0.97123 0.88446 1.07200 1.20330 0.91858 0.95628 0.82301 1.19427 0.91424 0.97674 1.03204 1.21349 0.94256 0.97750 0.97526 1.21572 0.94570 0.99244 0.98307 1.21634 1.01298 0.93397 0.96220 1.21375 0.93215 0.99857 1.00752 1.21064 0.96039 0.97160 0.99247 1.45365 1.51079 1.28784 1.10115 1.15941 0.80469 0.82483 0.80670 1.91021 1.44871 1.40112 1.67911 1.45383 1.47130 1.24476 1.04946 1.45333 1.34444 1.06959 1.39088 1.22388 0.83048 0.81087 0.82668 1.90694 1.28917 1.77561 1.46548 1.21714 1.01763 0.92690 0.98293 1.18714 0.94278 0.90998 0.95481 1.21644 1.15329 0.97319 1.23794 0.90020 1.26164 0.95419 1.00951 0.97948 1.70182 1.25089 1.20184 1.42338 0.85334 0.78579 0.77025 0.79068 1.21457 1.18637 1.18512 1.21821 0.75512 0.79065 0.91860 1.90777 1.53368 1.67290 1.22193 0.88742 0.94729 0.92130 0.85739 0.87464 0.82594 0.82327 0.83325 0.85196 0.87976 0.69471 0.71035 0.86016 0.86226 0.99910 0.99718 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.36 71.98 0.67 -1.02 16 2 C -0.11 -1.06 4.48 30.60 0.14 -0.93 16 3 C 0.19 3.57 0.95 2.24 0.00 3.57 16 4 C -0.12 -2.26 4.93 -19.87 -0.10 -2.35 16 5 C -0.09 -1.31 9.18 22.27 0.20 -1.11 16 6 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 7 C -0.11 -1.65 10.05 22.27 0.22 -1.42 16 8 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 9 C -0.12 -2.73 9.35 22.27 0.21 -2.52 16 10 N -0.69 -13.88 3.66 -443.27 -1.62 -15.50 16 11 C 0.70 21.90 8.42 179.44 1.51 23.41 16 12 O -0.57 -22.35 17.91 -3.82 -0.07 -22.42 16 13 N -0.39 -12.12 2.93 -441.13 -1.29 -13.41 16 14 N -0.50 -16.50 6.00 -173.54 -1.04 -17.55 16 15 C 0.52 21.96 7.88 87.66 0.69 22.65 16 16 O -0.56 -29.85 16.19 -3.04 -0.05 -29.90 16 17 C -0.10 -4.23 5.64 29.85 0.17 -4.06 16 18 C 0.04 2.44 4.26 29.85 0.13 2.57 16 19 C -0.54 -31.00 9.11 25.60 0.23 -30.76 16 20 H 0.08 4.17 7.74 -2.91 -0.02 4.15 16 21 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 22 N -0.94 -60.28 13.29 21.45 0.28 -60.00 16 23 Si 0.98 44.63 29.54 68.60 2.03 46.66 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 C 0.53 14.61 6.18 87.94 0.54 15.15 16 28 O -0.47 -14.62 18.01 -2.88 -0.05 -14.67 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.03 0.50 7.42 -2.38 -0.02 0.48 16 31 H 0.06 0.70 7.43 -2.39 -0.02 0.68 16 32 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 0.84 7.01 -2.39 -0.02 0.82 16 34 H 0.16 1.38 6.51 -2.91 -0.02 1.36 16 35 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.10 2.80 7.31 -2.91 -0.02 2.77 16 39 H 0.46 6.47 8.96 -92.71 -0.83 5.64 16 40 H 0.44 10.45 8.83 -213.33 -1.88 8.57 16 41 H 0.12 4.19 8.14 -2.38 -0.02 4.17 16 42 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 43 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 44 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 45 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -91.25 386.67 2.06 -89.20 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -1.67 Total: 18.20 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 5.54 Total: 19.39 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -3.67 Total: -106.46 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -0.17 Total: -66.98 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -91.25 2.06 -89.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290866226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.985 kcal (2) G-P(sol) polarization free energy of solvation -91.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds