Wall clock time and date at job start Wed Apr 1 2020 04:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 C 1.50696 * 110.53563 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00309 * 210.00110 * 4 3 2 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 3 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 9 9 C 1.38234 * 120.00081 * 359.88514 * 8 7 6 10 10 N 1.47314 * 110.59817 * 57.16883 * 3 2 1 11 11 C 1.34522 * 106.61825 * 241.31899 * 10 3 2 12 12 O 1.21541 * 123.77384 * 179.97438 * 11 10 3 13 13 N 1.33795 * 112.46095 * 359.97438 * 11 10 3 14 14 N 1.40098 * 124.18024 * 180.02562 * 13 11 10 15 15 C 1.34772 * 120.00238 * 74.98076 * 14 13 11 16 16 O 1.21287 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00180 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.46807 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.47122 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99606 * 0.02562 * 19 18 17 21 21 C 1.37868 * 120.00145 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99832 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00136 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46955 * 90.00126 * 23 21 19 25 25 H 1.48507 * 109.47060 * 209.99822 * 23 21 19 26 26 H 1.48493 * 109.47096 * 329.99925 * 23 21 19 27 27 C 1.35119 * 111.68077 * 0.10005 * 13 11 10 28 28 O 1.21236 * 127.33145 * 179.97438 * 27 13 11 29 29 H 1.09001 * 109.46747 * 59.99706 * 1 2 3 30 30 H 1.08993 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47262 * 300.00404 * 1 2 3 32 32 H 1.08996 * 109.47412 * 239.99879 * 2 1 3 33 33 H 1.09001 * 109.46748 * 119.99737 * 2 1 3 34 34 H 1.08000 * 120.00376 * 359.97438 * 5 4 3 35 35 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 36 36 H 1.08001 * 120.00299 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.00107 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.00147 * 180.10835 * 9 8 7 39 39 H 0.97000 * 126.69067 * 61.28350 * 10 3 2 40 40 H 0.97005 * 119.99774 * 254.97735 * 14 13 11 41 41 H 1.08993 * 109.47247 * 300.00110 * 17 15 14 42 42 H 1.09004 * 109.47018 * 60.00369 * 17 15 14 43 43 H 1.09000 * 109.47747 * 299.99952 * 18 17 15 44 44 H 1.09001 * 109.47362 * 60.00326 * 18 17 15 45 45 H 0.97007 * 119.99579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5468 1.4705 0.0006 5 6 4.2183 2.5200 0.5993 6 6 5.6004 2.5454 0.6004 7 6 6.3110 1.5210 0.0031 8 6 5.6394 0.4720 -0.5964 9 6 4.2573 0.4461 -0.5967 10 7 1.5079 2.1804 1.1587 11 6 0.7774 3.1964 0.6653 12 8 0.1930 4.0068 1.3574 13 7 0.7659 3.2153 -0.6725 14 7 0.0825 4.1673 -1.4403 15 6 0.5720 5.4177 -1.5553 16 8 1.6038 5.7190 -0.9936 17 6 -0.1628 6.4415 -2.3817 18 6 0.5993 7.7677 -2.3462 19 6 -0.1358 8.7918 -3.1721 20 1 -1.0548 8.5235 -3.6720 21 6 0.3649 10.0709 -3.2896 22 7 -0.2769 10.9647 -4.0100 23 14 1.9549 10.5346 -2.4256 24 1 3.1041 10.2687 -3.3276 25 1 1.9248 11.9772 -2.0743 26 1 2.0995 9.7267 -1.1881 27 6 1.4932 2.2022 -1.1923 28 8 1.6734 1.9527 -2.3649 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6633 3.3201 1.0663 35 1 6.1252 3.3675 1.0642 36 1 7.3908 1.5410 0.0035 37 1 6.1945 -0.3282 -1.0634 38 1 3.7326 -0.3743 -1.0636 39 1 1.6552 1.9735 2.0949 40 1 -0.7429 3.9263 -1.8893 41 1 -0.2367 6.0920 -3.4115 42 1 -1.1634 6.5868 -1.9746 43 1 0.6729 8.1171 -1.3163 44 1 1.6001 7.6227 -2.7530 45 1 0.0757 11.8646 -4.0929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290866232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:27 Heat of formation + Delta-G solvation = -14.961216 kcal Electronic energy + Delta-G solvation = -30740.080541 eV Core-core repulsion = 26532.063378 eV Total energy + Delta-G solvation = -4208.017163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.02034 -39.83126 -39.05181 -38.79749 -36.81107 -35.85435 -33.59121 -33.43401 -31.94738 -31.50122 -31.17619 -30.81531 -27.19485 -26.28348 -24.13763 -23.24461 -23.07144 -22.36858 -21.21436 -20.55963 -20.10681 -18.71513 -17.89770 -17.51896 -17.31220 -16.61395 -16.35910 -16.07272 -15.92899 -15.41925 -15.11848 -14.98602 -14.72389 -14.36608 -14.12844 -14.08836 -13.95891 -13.72750 -13.69102 -13.10955 -12.75685 -12.59807 -12.44497 -12.24973 -11.82412 -11.62729 -11.51018 -11.43305 -11.16406 -11.01487 -10.82581 -10.54688 -10.26596 -10.11498 -9.93239 -9.83779 -9.56806 -9.42476 -9.27475 -9.22823 -9.14388 -8.52464 -6.04632 -4.04043 0.70487 1.04724 1.22679 1.34320 2.57802 2.74839 2.88003 3.23220 3.37496 3.44094 3.55078 3.60413 3.73410 3.85461 4.08129 4.49742 4.55751 4.62455 4.66149 4.72567 4.80916 4.99953 5.05604 5.12194 5.15381 5.24170 5.30734 5.35945 5.45159 5.52806 5.66243 5.68402 5.92525 5.97074 6.04263 6.10119 6.13044 6.16774 6.44924 6.53358 6.58150 6.66347 7.11236 7.24821 7.29635 7.36703 7.73100 7.84544 8.40978 8.50406 8.97460 9.57808 11.07951 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003093 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.421097 B = 9050.928803 C =10152.005459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C 0.180 3.820 4 C -0.103 4.103 5 C -0.091 4.091 6 C -0.117 4.117 7 C -0.106 4.106 8 C -0.121 4.121 9 C -0.092 4.092 10 N -0.712 5.712 11 C 0.708 3.292 12 O -0.519 6.519 13 N -0.378 5.378 14 N -0.515 5.515 15 C 0.517 3.483 16 O -0.513 6.513 17 C -0.107 4.107 18 C 0.002 3.998 19 C -0.526 4.526 20 H 0.075 0.925 21 C 0.071 3.929 22 N -0.901 5.901 23 Si 0.876 3.124 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.261 1.261 27 C 0.538 3.462 28 O -0.445 6.445 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.442 0.558 40 H 0.425 0.575 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.027 0.973 44 H 0.021 0.979 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -29.499 10.534 32.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.154 4.154 3 C 0.087 3.913 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.135 4.135 7 C -0.125 4.125 8 C -0.139 4.139 9 C -0.111 4.111 10 N -0.379 5.379 11 C 0.409 3.591 12 O -0.389 6.389 13 N -0.212 5.212 14 N -0.268 5.268 15 C 0.306 3.694 16 O -0.383 6.383 17 C -0.149 4.149 18 C -0.036 4.036 19 C -0.563 4.563 20 H 0.093 0.907 21 C -0.131 4.131 22 N -0.540 5.540 23 Si 0.703 3.297 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.185 1.185 27 C 0.323 3.677 28 O -0.311 6.311 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.288 0.712 40 H 0.267 0.733 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.045 0.955 44 H 0.039 0.961 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.789 -28.665 10.533 31.517 hybrid contribution 0.493 0.243 0.536 0.768 sum 8.282 -28.422 11.070 31.606 Atomic orbital electron populations 1.21877 0.94315 1.03172 1.02521 1.21862 0.97229 0.91330 1.05015 1.20141 0.92434 0.94638 0.84087 1.19366 0.91310 0.97179 1.02633 1.21080 0.94827 0.97010 0.98051 1.21197 0.93790 0.98819 0.99668 1.21302 1.00252 0.94011 0.96894 1.21155 0.94022 0.98932 0.99794 1.21034 0.94330 0.97749 0.97954 1.45486 1.53623 1.30005 1.08815 1.15750 0.80188 0.82106 0.81104 1.91061 1.47173 1.40532 1.60176 1.45173 1.46725 1.24094 1.05198 1.45730 1.26283 1.05216 1.49621 1.22454 0.85894 0.80348 0.80684 1.90696 1.23838 1.78046 1.45760 1.21733 1.00582 0.93882 0.98657 1.19429 0.95717 0.90203 0.98283 1.21039 1.10193 0.94557 1.30559 0.90673 1.24940 0.97121 0.96305 0.94697 1.69906 1.39582 1.04360 1.40137 0.86820 0.84099 0.77565 0.81251 1.20193 1.21325 1.18547 1.21098 0.76630 0.79712 0.90215 1.90808 1.55940 1.68091 1.16270 0.92763 0.90944 0.91776 0.88768 0.88873 0.85658 0.85445 0.85643 0.85429 0.85151 0.71165 0.73281 0.88554 0.88455 0.95502 0.96073 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.40 37.16 0.35 -0.66 16 2 C -0.12 -0.69 4.67 -26.73 -0.12 -0.81 16 3 C 0.18 1.69 0.95 -133.25 -0.13 1.56 16 4 C -0.10 -1.01 4.94 -104.63 -0.52 -1.52 16 5 C -0.09 -0.99 9.35 -39.59 -0.37 -1.36 16 6 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 7 C -0.11 -0.86 10.05 -39.58 -0.40 -1.25 16 8 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 9 C -0.09 -0.75 9.17 -39.58 -0.36 -1.11 16 10 N -0.71 -6.82 3.98 -54.02 -0.21 -7.03 16 11 C 0.71 10.20 8.46 -88.02 -0.74 9.45 16 12 O -0.52 -9.44 17.91 5.33 0.10 -9.35 16 13 N -0.38 -5.56 2.94 -15.71 -0.05 -5.61 16 14 N -0.52 -7.91 6.01 31.22 0.19 -7.72 16 15 C 0.52 9.98 7.88 -10.99 -0.09 9.89 16 16 O -0.51 -11.95 16.18 5.55 0.09 -11.86 16 17 C -0.11 -2.06 5.64 -27.88 -0.16 -2.22 16 18 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 19 C -0.53 -14.97 9.66 -34.44 -0.33 -15.30 16 20 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 23 Si 0.88 22.72 27.47 -169.99 -4.67 18.05 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 27 C 0.54 7.15 5.87 -10.40 -0.06 7.09 16 28 O -0.45 -6.81 18.02 5.59 0.10 -6.71 16 29 H 0.05 0.42 7.20 -51.93 -0.37 0.05 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 7.59 -51.93 -0.39 0.03 16 32 H 0.09 0.50 6.61 -51.93 -0.34 0.16 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.13 1.50 7.38 -52.49 -0.39 1.12 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.13 0.77 6.26 -52.49 -0.33 0.44 16 39 H 0.44 2.97 8.96 -40.82 -0.37 2.61 16 40 H 0.42 4.86 8.83 -182.59 -1.61 3.25 16 41 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.03 0.70 7.16 -51.93 -0.37 0.33 16 44 H 0.02 0.54 7.52 -51.93 -0.39 0.15 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -38.96 382.68 -8.95 -47.91 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.11 Total: 0.81 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -3.92 Total: 2.90 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.70 Total: -47.52 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: 0.29 Total: -27.92 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.96 -8.95 -47.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290866232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.948 kcal (2) G-P(sol) polarization free energy of solvation -38.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds