Wall clock time and date at job start Wed Apr 1 2020 04:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 C 1.50696 * 110.53563 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00309 * 210.00110 * 4 3 2 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 3 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 9 9 C 1.38234 * 120.00081 * 359.88514 * 8 7 6 10 10 N 1.47314 * 110.59817 * 57.16883 * 3 2 1 11 11 C 1.34522 * 106.61825 * 241.31899 * 10 3 2 12 12 O 1.21541 * 123.77384 * 179.97438 * 11 10 3 13 13 N 1.33795 * 112.46095 * 359.97438 * 11 10 3 14 14 N 1.40098 * 124.18024 * 180.02562 * 13 11 10 15 15 C 1.34772 * 120.00238 * 74.98076 * 14 13 11 16 16 O 1.21287 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00180 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.46807 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.47122 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99606 * 0.02562 * 19 18 17 21 21 C 1.37868 * 120.00145 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99832 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00136 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46955 * 90.00126 * 23 21 19 25 25 H 1.48507 * 109.47060 * 209.99822 * 23 21 19 26 26 H 1.48493 * 109.47096 * 329.99925 * 23 21 19 27 27 C 1.35119 * 111.68077 * 0.10005 * 13 11 10 28 28 O 1.21236 * 127.33145 * 179.97438 * 27 13 11 29 29 H 1.09001 * 109.46747 * 59.99706 * 1 2 3 30 30 H 1.08993 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47262 * 300.00404 * 1 2 3 32 32 H 1.08996 * 109.47412 * 239.99879 * 2 1 3 33 33 H 1.09001 * 109.46748 * 119.99737 * 2 1 3 34 34 H 1.08000 * 120.00376 * 359.97438 * 5 4 3 35 35 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 36 36 H 1.08001 * 120.00299 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.00107 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.00147 * 180.10835 * 9 8 7 39 39 H 0.97000 * 126.69067 * 61.28350 * 10 3 2 40 40 H 0.97005 * 119.99774 * 254.97735 * 14 13 11 41 41 H 1.08993 * 109.47247 * 300.00110 * 17 15 14 42 42 H 1.09004 * 109.47018 * 60.00369 * 17 15 14 43 43 H 1.09000 * 109.47747 * 299.99952 * 18 17 15 44 44 H 1.09001 * 109.47362 * 60.00326 * 18 17 15 45 45 H 0.97007 * 119.99579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5468 1.4705 0.0006 5 6 4.2183 2.5200 0.5993 6 6 5.6004 2.5454 0.6004 7 6 6.3110 1.5210 0.0031 8 6 5.6394 0.4720 -0.5964 9 6 4.2573 0.4461 -0.5967 10 7 1.5079 2.1804 1.1587 11 6 0.7774 3.1964 0.6653 12 8 0.1930 4.0068 1.3574 13 7 0.7659 3.2153 -0.6725 14 7 0.0825 4.1673 -1.4403 15 6 0.5720 5.4177 -1.5553 16 8 1.6038 5.7190 -0.9936 17 6 -0.1628 6.4415 -2.3817 18 6 0.5993 7.7677 -2.3462 19 6 -0.1358 8.7918 -3.1721 20 1 -1.0548 8.5235 -3.6720 21 6 0.3649 10.0709 -3.2896 22 7 -0.2769 10.9647 -4.0100 23 14 1.9549 10.5346 -2.4256 24 1 3.1041 10.2687 -3.3276 25 1 1.9248 11.9772 -2.0743 26 1 2.0995 9.7267 -1.1881 27 6 1.4932 2.2022 -1.1923 28 8 1.6734 1.9527 -2.3649 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6633 3.3201 1.0663 35 1 6.1252 3.3675 1.0642 36 1 7.3908 1.5410 0.0035 37 1 6.1945 -0.3282 -1.0634 38 1 3.7326 -0.3743 -1.0636 39 1 1.6552 1.9735 2.0949 40 1 -0.7429 3.9263 -1.8893 41 1 -0.2367 6.0920 -3.4115 42 1 -1.1634 6.5868 -1.9746 43 1 0.6729 8.1171 -1.3163 44 1 1.6001 7.6227 -2.7530 45 1 0.0757 11.8646 -4.0929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290866232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:25 Heat of formation + Delta-G solvation = -42.796033 kcal Electronic energy + Delta-G solvation = -30741.287550 eV Core-core repulsion = 26532.063378 eV Total energy + Delta-G solvation = -4209.224171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.04120 -41.00021 -40.20734 -39.83771 -37.80608 -37.11040 -35.62933 -34.37553 -33.51419 -32.53998 -32.08388 -31.74750 -28.37622 -27.75188 -25.01465 -24.63093 -23.86201 -23.01160 -22.70771 -21.70524 -21.41504 -19.84527 -19.37917 -18.70816 -18.42683 -18.08845 -17.35762 -17.20892 -16.94777 -16.60469 -16.29159 -16.24183 -15.87413 -15.64082 -15.46493 -15.03629 -14.80037 -14.73853 -14.66737 -14.52863 -14.37903 -13.80304 -13.51733 -12.97546 -12.96273 -12.82098 -12.65851 -12.31059 -12.24853 -12.20669 -12.05694 -11.99560 -11.89029 -11.81775 -11.76687 -11.45253 -11.07033 -10.87007 -10.80329 -10.70865 -9.93320 -9.86953 -8.33756 -6.36644 -0.18455 0.20833 0.37332 0.39850 1.26960 1.30184 1.32576 1.47214 1.66458 1.76929 2.31586 2.32323 2.59724 2.92873 3.01842 3.07167 3.43023 3.67083 3.93618 3.99498 4.04194 4.16675 4.24603 4.25450 4.27356 4.38334 4.49967 4.53330 4.68717 4.82469 4.88941 4.90939 4.95542 4.96749 5.05399 5.23124 5.26968 5.35153 5.39567 5.44455 5.52901 5.54416 5.55577 5.64915 5.94790 5.95982 6.04528 6.20993 6.64984 6.71868 7.10303 7.28543 8.81667 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003093 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.421097 B = 9050.928803 C =10152.005459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.111 4.111 3 C 0.190 3.810 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.133 4.133 7 C -0.108 4.108 8 C -0.120 4.120 9 C -0.091 4.091 10 N -0.686 5.686 11 C 0.705 3.295 12 O -0.565 6.565 13 N -0.386 5.386 14 N -0.505 5.505 15 C 0.521 3.479 16 O -0.560 6.560 17 C -0.101 4.101 18 C 0.005 3.995 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.017 3.983 22 N -0.940 5.940 23 Si 0.933 3.067 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.266 1.266 27 C 0.532 3.468 28 O -0.467 6.467 29 H 0.034 0.966 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.456 0.544 40 H 0.443 0.557 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 -32.909 10.875 35.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.148 4.148 3 C 0.098 3.902 4 C -0.117 4.117 5 C -0.134 4.134 6 C -0.151 4.151 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.109 4.109 10 N -0.354 5.354 11 C 0.405 3.595 12 O -0.439 6.439 13 N -0.221 5.221 14 N -0.258 5.258 15 C 0.311 3.689 16 O -0.435 6.435 17 C -0.142 4.142 18 C -0.033 4.033 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.181 4.181 22 N -0.580 5.580 23 Si 0.758 3.242 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.191 1.191 27 C 0.320 3.680 28 O -0.334 6.334 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.148 0.852 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.305 0.695 40 H 0.290 0.710 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.028 0.972 44 H 0.029 0.971 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.175 -32.155 10.871 35.161 hybrid contribution 0.065 1.206 0.393 1.270 sum 9.240 -30.949 11.264 34.206 Atomic orbital electron populations 1.21905 0.94535 1.04274 1.01285 1.22003 0.96937 0.88616 1.07274 1.20327 0.92470 0.95843 0.81560 1.19417 0.91060 0.97700 1.03539 1.21051 0.95575 0.97224 0.99554 1.21372 0.93500 0.99827 1.00435 1.21633 1.01520 0.93452 0.95942 1.21577 0.94037 0.99270 0.98841 1.21381 0.94833 0.97692 0.97015 1.45386 1.51733 1.28416 1.09830 1.15929 0.80324 0.82473 0.80786 1.91026 1.49390 1.42463 1.60984 1.45487 1.47216 1.23836 1.05540 1.45288 1.26665 1.04849 1.49020 1.22237 0.85114 0.81490 0.80080 1.90678 1.25816 1.79245 1.47771 1.21546 1.00534 0.91592 1.00506 1.19255 0.95505 0.92300 0.96239 1.21341 1.09648 0.95378 1.30140 0.92428 1.25725 1.00218 0.96594 0.95538 1.70008 1.41318 1.04958 1.41755 0.85907 0.80658 0.77608 0.80019 1.19278 1.20159 1.19051 1.21858 0.75821 0.79265 0.91084 1.90786 1.56597 1.68651 1.17415 0.94659 0.88690 0.92385 0.87259 0.85710 0.87984 0.85155 0.83375 0.82399 0.82535 0.69455 0.71046 0.86129 0.86372 0.97214 0.97118 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.40 71.98 0.68 -0.94 16 2 C -0.11 -0.94 4.67 30.60 0.14 -0.80 16 3 C 0.19 3.25 0.95 2.24 0.00 3.25 16 4 C -0.12 -2.05 4.94 -19.87 -0.10 -2.15 16 5 C -0.12 -2.48 9.35 22.27 0.21 -2.27 16 6 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 7 C -0.11 -1.47 10.05 22.27 0.22 -1.25 16 8 C -0.12 -1.37 10.05 22.27 0.22 -1.15 16 9 C -0.09 -1.17 9.17 22.27 0.20 -0.97 16 10 N -0.69 -12.68 3.98 -443.26 -1.76 -14.44 16 11 C 0.70 20.48 8.46 179.44 1.52 22.00 16 12 O -0.56 -21.11 17.91 -3.84 -0.07 -21.18 16 13 N -0.39 -11.36 2.94 -440.67 -1.30 -12.65 16 14 N -0.50 -15.44 6.01 -173.53 -1.04 -16.48 16 15 C 0.52 20.27 7.88 87.66 0.69 20.96 16 16 O -0.56 -26.80 16.18 -3.05 -0.05 -26.85 16 17 C -0.10 -3.85 5.64 29.85 0.17 -3.68 16 18 C 0.01 0.26 3.33 29.85 0.10 0.36 16 19 C -0.53 -30.42 9.66 25.60 0.25 -30.17 16 20 H 0.06 3.45 7.99 -2.91 -0.02 3.43 16 21 C 0.02 1.04 5.47 84.65 0.46 1.50 16 22 N -0.94 -59.01 13.96 21.44 0.30 -58.71 16 23 Si 0.93 47.44 27.47 68.60 1.88 49.33 16 24 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.27 -13.63 6.54 99.48 0.65 -12.98 16 27 C 0.53 13.72 5.87 87.88 0.52 14.24 16 28 O -0.47 -13.84 18.02 -2.90 -0.05 -13.89 16 29 H 0.03 0.49 7.20 -2.39 -0.02 0.47 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.65 7.59 -2.38 -0.02 0.63 16 32 H 0.11 0.69 6.61 -2.39 -0.02 0.68 16 33 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.10 2.59 7.38 -2.91 -0.02 2.57 16 35 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 38 H 0.16 1.13 6.26 -2.91 -0.02 1.12 16 39 H 0.46 5.71 8.96 -92.71 -0.83 4.88 16 40 H 0.44 9.85 8.83 -213.31 -1.88 7.97 16 41 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 43 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 44 H 0.01 0.55 7.52 -2.39 -0.02 0.53 16 45 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -87.22 382.68 1.70 -85.52 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -1.72 Total: 12.66 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 5.51 Total: 16.71 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.80 Total: -102.29 kcal Atomic # 8 Polarization: -61.75 SS G_CDS: -0.17 Total: -61.92 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.88 Total: 49.33 kcal Total: -87.22 1.70 -85.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290866232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.721 kcal (2) G-P(sol) polarization free energy of solvation -87.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds