Wall clock time and date at job start Wed Apr 1 2020 03:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30178 * 126.80543 * 2 1 4 4 O 1.20915 * 111.60876 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.56972 * 359.76426 * 4 3 2 6 6 C 1.50699 * 126.78028 * 180.29327 * 5 4 3 7 7 C 1.35453 * 106.44027 * 0.37877 * 5 4 3 8 8 C 1.50705 * 128.00281 * 179.91534 * 7 5 4 9 9 C 1.53006 * 109.46625 * 269.67819 * 8 7 5 10 10 H 1.08997 * 109.47509 * 304.99889 * 9 8 7 11 11 C 1.53000 * 109.46739 * 185.00083 * 9 8 7 12 12 N 1.46496 * 109.47141 * 65.00332 * 9 8 7 13 13 S 1.65599 * 120.00123 * 214.99449 * 12 9 8 14 14 O 1.42102 * 106.40332 * 311.46524 * 13 12 9 15 15 O 1.42098 * 106.40709 * 178.53851 * 13 12 9 16 16 N 1.65611 * 107.21496 * 65.00012 * 13 12 9 17 17 C 1.46499 * 119.99954 * 269.99880 * 16 13 12 18 18 C 1.46499 * 119.99775 * 90.00128 * 16 13 12 19 19 H 1.09002 * 109.47391 * 359.97438 * 18 16 13 20 20 C 1.53000 * 109.46840 * 120.00228 * 18 16 13 21 21 C 1.50699 * 109.47060 * 239.99970 * 18 16 13 22 22 H 1.07999 * 120.00019 * 0.02562 * 21 18 16 23 23 C 1.37877 * 120.00129 * 180.02562 * 21 18 16 24 24 N 1.31519 * 119.99723 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99900 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47147 * 90.00197 * 25 23 21 27 27 H 1.48499 * 109.46797 * 209.99607 * 25 23 21 28 28 H 1.48500 * 109.47032 * 329.99738 * 25 23 21 29 29 H 1.09002 * 109.47237 * 269.97075 * 1 2 3 30 30 H 1.09001 * 109.47618 * 29.97366 * 1 2 3 31 31 H 1.09008 * 109.46997 * 149.97175 * 1 2 3 32 32 H 1.09000 * 109.46669 * 270.10716 * 6 5 4 33 33 H 1.08995 * 109.47124 * 30.10535 * 6 5 4 34 34 H 1.09000 * 109.47194 * 150.11155 * 6 5 4 35 35 H 1.08994 * 109.47227 * 149.68217 * 8 7 5 36 36 H 1.08997 * 109.47239 * 29.67674 * 8 7 5 37 37 H 1.08999 * 109.47266 * 59.99977 * 11 9 8 38 38 H 1.09000 * 109.47151 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.47672 * 299.99954 * 11 9 8 40 40 H 0.96998 * 120.00130 * 34.99791 * 12 9 8 41 41 H 1.08994 * 109.47057 * 270.00018 * 17 16 13 42 42 H 1.09006 * 109.46711 * 30.00180 * 17 16 13 43 43 H 1.08998 * 109.46853 * 149.99973 * 17 16 13 44 44 H 1.09004 * 109.46724 * 180.02562 * 20 18 16 45 45 H 1.09001 * 109.47194 * 299.99493 * 20 18 16 46 46 H 1.08992 * 109.47399 * 59.99666 * 20 18 16 47 47 H 0.97003 * 119.99231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8242 -3.0787 -1.4425 10 1 1.1253 -2.4388 -1.9810 11 6 1.3034 -4.5173 -1.4437 12 7 3.1333 -3.0327 -2.0986 13 16 3.2407 -2.6514 -3.7065 14 8 2.2835 -3.4608 -4.3757 15 8 4.6247 -2.6571 -4.0287 16 7 2.7281 -1.0856 -3.8742 17 6 1.3130 -0.8010 -4.1246 18 6 3.6897 0.0149 -3.7722 19 1 4.6849 -0.3884 -3.5850 20 6 3.6979 0.8077 -5.0807 21 6 3.2947 0.9235 -2.6368 22 1 2.4156 0.7031 -2.0495 23 6 4.0557 2.0363 -2.3476 24 7 5.1266 2.3045 -3.0624 25 14 3.5656 3.1630 -0.9405 26 1 4.2141 2.7006 0.3128 27 1 4.0031 4.5498 -1.2415 28 1 2.0902 3.1344 -0.7743 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 5.2202 -1.5549 -1.0146 33 1 5.6636 -0.7850 0.5277 34 1 4.7627 -2.3202 0.5259 35 1 1.0055 -2.7038 0.5145 36 1 2.7232 -3.1701 0.5131 37 1 0.3294 -4.5515 -0.9556 38 1 1.2077 -4.8682 -2.4712 39 1 2.0023 -5.1573 -0.9052 40 1 3.9371 -3.2257 -1.5911 41 1 1.1304 -0.7838 -5.1990 42 1 0.6996 -1.5757 -3.6641 43 1 1.0560 0.1680 -3.6967 44 1 4.4138 1.6263 -5.0050 45 1 3.9837 0.1505 -5.9021 46 1 2.7027 1.2110 -5.2675 47 1 5.6617 3.0876 -2.8591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330428337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:27 Heat of formation + Delta-G solvation = -2.972693 kcal Electronic energy + Delta-G solvation = -32883.569223 eV Core-core repulsion = 28811.515873 eV Total energy + Delta-G solvation = -4072.053350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.32258 -37.42524 -36.59086 -36.06736 -35.24280 -34.16699 -32.86522 -32.49105 -30.37269 -29.02964 -28.38664 -27.91731 -26.29819 -25.49044 -25.10623 -22.04708 -20.87085 -20.60135 -19.68122 -18.91940 -17.28147 -17.20133 -16.77148 -16.69255 -16.25655 -15.62737 -14.84047 -14.36805 -14.26503 -13.91353 -13.53075 -13.38613 -13.18858 -13.11614 -13.02923 -12.76460 -12.66443 -12.48893 -12.39574 -12.08964 -11.98723 -11.90713 -11.80021 -11.60937 -11.48096 -11.35584 -11.28306 -11.11626 -10.96881 -10.83069 -10.58114 -10.42579 -10.15237 -10.02848 -9.53643 -9.28829 -9.08180 -8.95906 -8.37669 -8.29705 -7.89191 -5.95674 -4.04936 1.27327 2.21971 2.78769 3.40471 3.49221 3.56289 3.74071 4.01154 4.15718 4.60685 4.73784 4.89106 4.93705 4.96991 5.07015 5.20160 5.34866 5.37319 5.49617 5.55676 5.57923 5.70240 5.71214 5.75482 5.83138 5.85705 5.92042 6.02992 6.07171 6.15911 6.16970 6.27814 6.30466 6.44722 6.47561 6.67850 6.74873 6.90636 6.91454 7.16764 7.25552 7.55270 7.70418 7.85607 8.12951 8.36658 8.96960 8.98781 9.65020 11.07529 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.007828 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.752136 B = 3576.042801 C = 4744.719875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.018 3.982 3 N -0.353 5.353 4 O 0.125 5.875 5 C 0.008 3.992 6 C -0.078 4.078 7 C -0.214 4.214 8 C -0.038 4.038 9 C 0.161 3.839 10 H 0.082 0.918 11 C -0.170 4.170 12 N -1.122 6.122 13 S 2.779 3.221 14 O -0.999 6.999 15 O -0.985 6.985 16 N -0.987 5.987 17 C 0.109 3.891 18 C 0.272 3.728 19 H 0.054 0.946 20 C -0.144 4.144 21 C -0.530 4.530 22 H 0.070 0.930 23 C 0.069 3.931 24 N -0.890 5.890 25 Si 0.927 3.073 26 H -0.280 1.280 27 H -0.324 1.324 28 H -0.266 1.266 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.408 0.592 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.008 0.992 46 H 0.030 0.970 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -10.360 7.766 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 N -0.061 5.061 4 O 0.062 5.938 5 C -0.056 4.056 6 C -0.135 4.135 7 C -0.218 4.218 8 C -0.077 4.077 9 C 0.053 3.947 10 H 0.100 0.900 11 C -0.230 4.230 12 N -0.880 5.880 13 S 2.788 3.212 14 O -0.983 6.983 15 O -0.969 6.969 16 N -0.830 5.830 17 C -0.037 4.037 18 C 0.169 3.831 19 H 0.072 0.928 20 C -0.204 4.204 21 C -0.569 4.569 22 H 0.088 0.912 23 C -0.134 4.134 24 N -0.528 5.528 25 Si 0.763 3.237 26 H -0.208 1.208 27 H -0.255 1.255 28 H -0.192 1.192 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.242 0.758 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.027 0.973 46 H 0.049 0.951 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.768 -9.486 6.929 13.557 hybrid contribution -0.033 0.244 1.072 1.100 sum -6.801 -9.242 8.001 13.989 Atomic orbital electron populations 1.20048 0.87269 1.03236 1.02195 1.23024 0.97959 0.88779 1.04199 1.73590 0.89951 1.23557 1.19020 1.85128 1.20728 1.21650 1.66336 1.23827 0.97283 0.84632 0.99820 1.20330 0.91128 0.97810 1.04255 1.20467 0.91708 0.96241 1.13368 1.20101 1.02144 0.89652 0.95832 1.20667 0.84042 0.96239 0.93770 0.89959 1.22337 1.00867 0.96377 1.03372 1.56178 1.13420 1.86948 1.31454 1.01870 0.72959 0.73232 0.73123 1.93537 1.63929 1.67995 1.72804 1.93586 1.33344 1.87241 1.82708 1.57661 1.15514 1.24136 1.85655 1.21178 0.80891 1.01934 0.99744 1.18686 0.86787 0.83163 0.94428 0.92837 1.22054 1.01083 1.01228 0.95986 1.21511 1.11747 1.08817 1.14843 0.91237 1.24946 0.94586 0.97324 0.96538 1.69924 1.15950 1.27569 1.39340 0.86242 0.79268 0.76784 0.81441 1.20770 1.25497 1.19158 0.91194 0.90909 0.90782 0.89063 0.90334 0.90063 0.90007 0.90556 0.91832 0.91136 0.92251 0.75848 0.94034 0.93537 0.90386 0.88950 0.97267 0.95116 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.39 36.00 0.37 -0.53 16 2 C 0.02 0.31 6.12 -82.10 -0.50 -0.19 16 3 N -0.35 -7.29 6.58 33.42 0.22 -7.07 16 4 O 0.12 2.61 5.48 17.18 0.09 2.71 16 5 C 0.01 0.14 6.46 -35.30 -0.23 -0.09 16 6 C -0.08 -1.07 9.35 36.01 0.34 -0.73 16 7 C -0.21 -3.20 5.20 -104.42 -0.54 -3.75 16 8 C -0.04 -0.42 5.15 -27.88 -0.14 -0.56 16 9 C 0.16 1.96 2.79 -67.93 -0.19 1.78 16 10 H 0.08 1.09 6.11 -51.93 -0.32 0.77 16 11 C -0.17 -1.76 9.52 37.16 0.35 -1.40 16 12 N -1.12 -16.19 5.21 -4.89 -0.03 -16.22 16 13 S 2.78 52.51 6.00 -107.50 -0.65 51.87 16 14 O -1.00 -19.85 16.47 -57.17 -0.94 -20.79 16 15 O -0.98 -21.78 16.70 -57.17 -0.95 -22.74 16 16 N -0.99 -19.84 3.12 -115.85 -0.36 -20.20 16 17 C 0.11 1.93 9.08 59.85 0.54 2.48 16 18 C 0.27 6.44 2.62 -69.08 -0.18 6.26 16 19 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 20 C -0.14 -3.46 8.97 37.16 0.33 -3.12 16 21 C -0.53 -12.94 5.93 -34.44 -0.20 -13.15 16 22 H 0.07 1.64 3.90 -52.49 -0.20 1.44 16 23 C 0.07 1.80 5.02 -17.82 -0.09 1.71 16 24 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 25 Si 0.93 22.88 24.04 -169.99 -4.09 18.79 16 26 H -0.28 -6.81 6.30 56.52 0.36 -6.46 16 27 H -0.32 -8.34 7.11 56.52 0.40 -7.94 16 28 H -0.27 -6.57 6.48 56.52 0.37 -6.21 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.09 1.38 7.61 -51.93 -0.40 0.98 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.80 7.43 -51.93 -0.39 0.41 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.71 7.44 -51.93 -0.39 0.32 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.86 7.64 -51.93 -0.40 0.47 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.41 5.17 7.30 -34.47 -0.25 4.91 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.71 6.17 -51.93 -0.32 0.39 16 43 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 44 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 45 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -32.76 364.27 -7.84 -40.60 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.12 Total: 2.77 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.14 Total: -11.30 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: 0.46 Total: -67.40 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.80 Total: -40.82 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.09 Total: 18.79 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.65 Total: 51.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.76 -7.84 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330428337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.631 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds