Wall clock time and date at job start Wed Apr 1 2020 03:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30178 * 126.80543 * 2 1 4 4 O 1.20915 * 111.60876 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.56972 * 359.76426 * 4 3 2 6 6 C 1.50699 * 126.78028 * 180.29327 * 5 4 3 7 7 C 1.35453 * 106.44027 * 0.37877 * 5 4 3 8 8 C 1.50705 * 128.00281 * 179.91534 * 7 5 4 9 9 C 1.53006 * 109.46625 * 269.67819 * 8 7 5 10 10 H 1.08997 * 109.47509 * 304.99889 * 9 8 7 11 11 C 1.53000 * 109.46739 * 185.00083 * 9 8 7 12 12 N 1.46496 * 109.47141 * 65.00332 * 9 8 7 13 13 S 1.65599 * 120.00123 * 214.99449 * 12 9 8 14 14 O 1.42102 * 106.40332 * 311.46524 * 13 12 9 15 15 O 1.42098 * 106.40709 * 178.53851 * 13 12 9 16 16 N 1.65611 * 107.21496 * 65.00012 * 13 12 9 17 17 C 1.46499 * 119.99954 * 269.99880 * 16 13 12 18 18 C 1.46499 * 119.99775 * 90.00128 * 16 13 12 19 19 H 1.09002 * 109.47391 * 359.97438 * 18 16 13 20 20 C 1.53000 * 109.46840 * 120.00228 * 18 16 13 21 21 C 1.50699 * 109.47060 * 239.99970 * 18 16 13 22 22 H 1.07999 * 120.00019 * 0.02562 * 21 18 16 23 23 C 1.37877 * 120.00129 * 180.02562 * 21 18 16 24 24 N 1.31519 * 119.99723 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99900 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47147 * 90.00197 * 25 23 21 27 27 H 1.48499 * 109.46797 * 209.99607 * 25 23 21 28 28 H 1.48500 * 109.47032 * 329.99738 * 25 23 21 29 29 H 1.09002 * 109.47237 * 269.97075 * 1 2 3 30 30 H 1.09001 * 109.47618 * 29.97366 * 1 2 3 31 31 H 1.09008 * 109.46997 * 149.97175 * 1 2 3 32 32 H 1.09000 * 109.46669 * 270.10716 * 6 5 4 33 33 H 1.08995 * 109.47124 * 30.10535 * 6 5 4 34 34 H 1.09000 * 109.47194 * 150.11155 * 6 5 4 35 35 H 1.08994 * 109.47227 * 149.68217 * 8 7 5 36 36 H 1.08997 * 109.47239 * 29.67674 * 8 7 5 37 37 H 1.08999 * 109.47266 * 59.99977 * 11 9 8 38 38 H 1.09000 * 109.47151 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.47672 * 299.99954 * 11 9 8 40 40 H 0.96998 * 120.00130 * 34.99791 * 12 9 8 41 41 H 1.08994 * 109.47057 * 270.00018 * 17 16 13 42 42 H 1.09006 * 109.46711 * 30.00180 * 17 16 13 43 43 H 1.08998 * 109.46853 * 149.99973 * 17 16 13 44 44 H 1.09004 * 109.46724 * 180.02562 * 20 18 16 45 45 H 1.09001 * 109.47194 * 299.99493 * 20 18 16 46 46 H 1.08992 * 109.47399 * 59.99666 * 20 18 16 47 47 H 0.97003 * 119.99231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8242 -3.0787 -1.4425 10 1 1.1253 -2.4388 -1.9810 11 6 1.3034 -4.5173 -1.4437 12 7 3.1333 -3.0327 -2.0986 13 16 3.2407 -2.6514 -3.7065 14 8 2.2835 -3.4608 -4.3757 15 8 4.6247 -2.6571 -4.0287 16 7 2.7281 -1.0856 -3.8742 17 6 1.3130 -0.8010 -4.1246 18 6 3.6897 0.0149 -3.7722 19 1 4.6849 -0.3884 -3.5850 20 6 3.6979 0.8077 -5.0807 21 6 3.2947 0.9235 -2.6368 22 1 2.4156 0.7031 -2.0495 23 6 4.0557 2.0363 -2.3476 24 7 5.1266 2.3045 -3.0624 25 14 3.5656 3.1630 -0.9405 26 1 4.2141 2.7006 0.3128 27 1 4.0031 4.5498 -1.2415 28 1 2.0902 3.1344 -0.7743 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 5.2202 -1.5549 -1.0146 33 1 5.6636 -0.7850 0.5277 34 1 4.7627 -2.3202 0.5259 35 1 1.0055 -2.7038 0.5145 36 1 2.7232 -3.1701 0.5131 37 1 0.3294 -4.5515 -0.9556 38 1 1.2077 -4.8682 -2.4712 39 1 2.0023 -5.1573 -0.9052 40 1 3.9371 -3.2257 -1.5911 41 1 1.1304 -0.7838 -5.1990 42 1 0.6996 -1.5757 -3.6641 43 1 1.0560 0.1680 -3.6967 44 1 4.4138 1.6263 -5.0050 45 1 3.9837 0.1505 -5.9021 46 1 2.7027 1.2110 -5.2675 47 1 5.6617 3.0876 -2.8591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330428337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:26 Heat of formation + Delta-G solvation = -27.495539 kcal Electronic energy + Delta-G solvation = -32884.632614 eV Core-core repulsion = 28811.515873 eV Total energy + Delta-G solvation = -4073.116741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.64300 -38.57652 -38.12546 -37.77137 -36.83984 -35.38153 -34.40704 -34.06102 -31.45454 -30.88450 -29.43130 -29.00833 -27.39254 -27.16475 -26.95693 -23.14533 -22.59878 -21.81023 -20.89284 -20.36229 -18.84831 -18.65264 -18.27464 -18.18760 -17.89395 -17.04235 -16.38928 -15.97282 -15.41156 -15.16432 -14.98900 -14.81383 -14.52178 -14.33021 -14.21577 -14.13948 -13.83435 -13.68522 -13.61888 -13.46994 -13.36511 -13.28308 -13.14742 -13.10043 -12.95274 -12.84607 -12.72208 -12.56938 -12.41609 -12.25701 -12.10993 -11.99254 -11.87154 -11.76604 -11.20377 -10.87885 -10.50263 -10.36648 -10.27615 -9.65425 -9.56180 -8.00193 -6.09311 -0.21711 0.92013 1.41508 1.57966 1.66867 1.76819 2.07376 2.53151 2.70111 2.80133 3.32867 3.50488 3.63569 3.82255 3.89098 4.08498 4.12411 4.22618 4.39309 4.55837 4.60486 4.65833 4.70620 4.72391 4.78432 4.80580 4.81677 4.96527 4.96767 5.00257 5.06627 5.07915 5.09835 5.12789 5.18881 5.27076 5.33355 5.46233 5.53520 5.65270 5.68219 5.75684 5.90583 6.13153 6.28791 6.39123 6.99252 7.62756 7.67121 9.03006 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.007828 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.752136 B = 3576.042801 C = 4744.719875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.019 3.981 3 N -0.401 5.401 4 O 0.078 5.922 5 C -0.013 4.013 6 C -0.080 4.080 7 C -0.201 4.201 8 C -0.033 4.033 9 C 0.153 3.847 10 H 0.074 0.926 11 C -0.165 4.165 12 N -1.110 6.110 13 S 2.794 3.206 14 O -1.007 7.007 15 O -1.022 7.022 16 N -0.995 5.995 17 C 0.105 3.895 18 C 0.281 3.719 19 H 0.024 0.976 20 C -0.139 4.139 21 C -0.504 4.504 22 H 0.081 0.919 23 C 0.034 3.966 24 N -0.920 5.920 25 Si 0.976 3.024 26 H -0.283 1.283 27 H -0.349 1.349 28 H -0.268 1.268 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.419 0.581 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.014 0.986 46 H 0.037 0.963 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -13.323 9.419 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 N -0.115 5.115 4 O 0.021 5.979 5 C -0.076 4.076 6 C -0.137 4.137 7 C -0.205 4.205 8 C -0.072 4.072 9 C 0.047 3.953 10 H 0.092 0.908 11 C -0.224 4.224 12 N -0.873 5.873 13 S 2.803 3.197 14 O -0.990 6.990 15 O -1.006 7.006 16 N -0.836 5.836 17 C -0.041 4.041 18 C 0.176 3.824 19 H 0.042 0.958 20 C -0.199 4.199 21 C -0.543 4.543 22 H 0.099 0.901 23 C -0.165 4.165 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.211 1.211 27 H -0.282 1.282 28 H -0.194 1.194 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.056 0.944 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.203 -12.479 8.587 17.724 hybrid contribution 0.622 1.024 0.612 1.346 sum -8.580 -11.454 9.199 17.013 Atomic orbital electron populations 1.20252 0.84600 1.04025 1.03998 1.23806 0.99697 0.88627 1.01745 1.73463 0.90376 1.25637 1.22035 1.84993 1.21188 1.23726 1.67966 1.24514 0.99333 0.83743 1.00059 1.20496 0.90011 0.99508 1.03663 1.20910 0.90304 0.97878 1.11412 1.20285 1.04808 0.86798 0.95316 1.20955 0.82414 0.97844 0.94118 0.90756 1.22293 1.02801 0.94626 1.02693 1.55840 1.15229 1.86229 1.30024 1.01272 0.71775 0.72658 0.74045 1.93527 1.63897 1.67735 1.73837 1.93535 1.35577 1.87535 1.83988 1.57555 1.15955 1.23652 1.86422 1.21327 0.79834 1.02492 1.00441 1.18294 0.86387 0.83829 0.93866 0.95796 1.21953 1.00714 1.00655 0.96598 1.21693 1.10999 1.07646 1.13967 0.90112 1.25360 0.94862 0.98634 0.97629 1.70035 1.17190 1.28014 1.40827 0.85484 0.78620 0.74300 0.80238 1.21097 1.28237 1.19399 0.88813 0.92227 0.87852 0.90886 0.90466 0.85645 0.86620 0.87963 0.88947 0.93279 0.90584 0.74561 0.93530 0.90552 0.91394 0.91445 0.96650 0.94384 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.39 71.23 0.74 -0.84 16 2 C 0.02 0.60 6.12 43.57 0.27 0.86 16 3 N -0.40 -16.25 6.58 -49.56 -0.33 -16.58 16 4 O 0.08 3.28 5.48 71.64 0.39 3.67 16 5 C -0.01 -0.44 6.46 25.04 0.16 -0.27 16 6 C -0.08 -2.06 9.35 71.24 0.67 -1.40 16 7 C -0.20 -5.36 5.20 -19.73 -0.10 -5.47 16 8 C -0.03 -0.55 5.15 29.85 0.15 -0.39 16 9 C 0.15 3.05 2.79 44.99 0.13 3.18 16 10 H 0.07 1.63 6.11 -2.39 -0.01 1.61 16 11 C -0.17 -2.55 9.52 71.98 0.69 -1.86 16 12 N -1.11 -28.86 5.21 -169.39 -0.88 -29.74 16 13 S 2.79 101.65 6.00 -56.49 -0.34 101.31 16 14 O -1.01 -37.87 16.47 -128.00 -2.11 -39.98 16 15 O -1.02 -45.18 16.70 -128.00 -2.14 -47.31 16 16 N -0.99 -38.99 3.12 -520.45 -1.62 -40.62 16 17 C 0.10 3.51 9.08 127.77 1.16 4.67 16 18 C 0.28 13.42 2.62 44.25 0.12 13.53 16 19 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 20 C -0.14 -6.81 8.97 71.98 0.65 -6.17 16 21 C -0.50 -24.79 5.93 25.60 0.15 -24.64 16 22 H 0.08 3.78 3.90 -2.91 -0.01 3.77 16 23 C 0.03 1.83 5.02 84.65 0.43 2.26 16 24 N -0.92 -52.74 11.32 21.45 0.24 -52.50 16 25 Si 0.98 49.18 24.04 68.60 1.65 50.83 16 26 H -0.28 -14.12 6.30 99.48 0.63 -13.49 16 27 H -0.35 -18.56 7.11 99.48 0.71 -17.85 16 28 H -0.27 -13.36 6.48 99.48 0.65 -12.71 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.07 2.18 7.61 -2.39 -0.02 2.16 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.13 2.01 7.43 -2.39 -0.02 1.99 16 35 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.23 7.44 -2.39 -0.02 1.22 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 1.00 7.64 -2.39 -0.02 0.99 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.42 9.37 7.30 -96.75 -0.71 8.67 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 2.08 6.17 -2.38 -0.01 2.07 16 43 H 0.07 2.41 7.02 -2.39 -0.02 2.40 16 44 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 45 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.04 1.74 7.67 -2.39 -0.02 1.72 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -74.73 364.27 0.21 -74.52 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.15 Total: 12.95 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.19 Total: -16.54 kcal Atomic # 7 Polarization: -136.85 SS G_CDS: -2.59 Total: -139.44 kcal Atomic # 8 Polarization: -79.77 SS G_CDS: -3.85 Total: -83.63 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.65 Total: 50.83 kcal Atomic # 16 Polarization: 101.65 SS G_CDS: -0.34 Total: 101.31 kcal Total: -74.73 0.21 -74.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330428337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.027 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds