Wall clock time and date at job start Wed Apr 1 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47328 * 2 1 4 4 N 1.30177 * 126.79851 * 270.02564 * 3 2 1 5 5 O 1.20920 * 111.60192 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56987 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.78041 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47427 * 269.95935 * 7 6 5 9 9 C 1.35455 * 106.44775 * 0.02562 * 6 5 4 10 10 C 1.50692 * 128.00976 * 180.26726 * 9 6 5 11 11 N 1.46504 * 109.46772 * 269.67205 * 10 9 6 12 12 S 1.65608 * 119.99773 * 164.39360 * 11 10 9 13 13 O 1.42099 * 106.39942 * 179.02896 * 12 11 10 14 14 O 1.42099 * 106.40328 * 311.94807 * 12 11 10 15 15 N 1.65594 * 107.21665 * 65.49261 * 12 11 10 16 16 C 1.46503 * 120.00127 * 89.76496 * 15 12 11 17 17 C 1.53004 * 109.47212 * 93.98641 * 16 15 12 18 18 C 1.46504 * 119.99941 * 269.75914 * 15 12 11 19 19 C 1.50690 * 109.46957 * 100.86692 * 18 15 12 20 20 H 1.07997 * 120.00287 * 3.37819 * 19 18 15 21 21 C 1.37880 * 119.99964 * 183.37429 * 19 18 15 22 22 N 1.31513 * 120.00110 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99822 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46973 * 90.00097 * 23 21 19 25 25 H 1.48499 * 109.47076 * 209.99648 * 23 21 19 26 26 H 1.48497 * 109.47129 * 330.00076 * 23 21 19 27 27 H 1.09000 * 109.47619 * 300.00520 * 1 2 3 28 28 H 1.09003 * 109.47068 * 60.00621 * 1 2 3 29 29 H 1.09002 * 109.47286 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47208 * 239.99599 * 2 1 3 31 31 H 1.09003 * 109.47068 * 119.99379 * 2 1 3 32 32 H 1.08997 * 109.47125 * 29.95872 * 7 6 5 33 33 H 1.09003 * 109.47237 * 149.95654 * 7 6 5 34 34 H 1.08997 * 109.46916 * 300.00064 * 8 7 6 35 35 H 1.09003 * 109.47142 * 59.99660 * 8 7 6 36 36 H 1.09002 * 109.47283 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47348 * 29.66764 * 10 9 6 38 38 H 1.08998 * 109.47707 * 149.67195 * 10 9 6 39 39 H 0.96997 * 120.00401 * 344.38937 * 11 10 9 40 40 H 1.09003 * 109.46889 * 213.98752 * 16 15 12 41 41 H 1.08991 * 109.46946 * 333.98666 * 16 15 12 42 42 H 1.08999 * 109.46775 * 65.05185 * 17 16 15 43 43 H 1.08994 * 109.46802 * 185.05081 * 17 16 15 44 44 H 1.08997 * 109.47175 * 305.05131 * 17 16 15 45 45 H 1.09000 * 109.46987 * 220.87334 * 18 15 12 46 46 H 1.09003 * 109.47060 * 340.86745 * 18 15 12 47 47 H 0.97001 * 120.00229 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2918 2.1561 -1.0424 5 8 2.6805 3.2564 -0.7254 6 6 2.7298 3.3968 0.6067 7 6 3.1621 4.6225 1.3694 8 6 4.6685 4.5570 1.6288 9 6 2.3143 2.2195 1.1320 10 6 2.1774 1.8491 2.5863 11 7 3.4339 1.2647 3.0617 12 16 3.7171 1.1198 4.6869 13 8 4.9913 0.5048 4.8189 14 8 3.3984 2.3788 5.2635 15 7 2.6125 0.0395 5.2825 16 6 2.9304 -1.3902 5.3156 17 6 3.5102 -1.7523 6.6845 18 6 1.3172 0.5134 5.7766 19 6 0.2617 0.2742 4.7281 20 1 0.5176 -0.2341 3.8102 21 6 -1.0310 0.7041 4.9406 22 7 -1.9524 0.4949 4.0258 23 14 -1.4737 1.5838 6.5280 24 1 -1.2800 3.0458 6.3543 25 1 -2.8932 1.3095 6.8667 26 1 -0.5997 1.0956 7.6248 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.9324 5.5137 0.7854 33 1 2.6311 4.6647 2.3205 34 1 4.8981 3.6658 2.2129 35 1 5.1994 4.5148 0.6777 36 1 4.9812 5.4438 2.1801 37 1 1.9487 2.7416 3.1686 38 1 1.3724 1.1234 2.7023 39 1 4.0999 0.9625 2.4245 40 1 2.0230 -1.9684 5.1408 41 1 3.6613 -1.6179 4.5398 42 1 2.7484 -1.6093 7.4509 43 1 3.8296 -2.7944 6.6796 44 1 4.3653 -1.1111 6.8980 45 1 1.0553 -0.0273 6.6860 46 1 1.3791 1.5800 5.9931 47 1 -2.8618 0.7977 4.1752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336907737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:12 Heat of formation + Delta-G solvation = -34.900212 kcal Electronic energy + Delta-G solvation = -30705.125229 eV Core-core repulsion = 26631.687398 eV Total energy + Delta-G solvation = -4073.437831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.75539 -36.87860 -36.44269 -36.17271 -35.35876 -34.87837 -33.72817 -32.71394 -31.08380 -30.27989 -30.03369 -27.22290 -26.15895 -24.39560 -23.47562 -22.98794 -21.63060 -21.28394 -19.59171 -18.91746 -17.53775 -17.33651 -17.09870 -16.89531 -16.60609 -15.81990 -15.12678 -15.04532 -14.39543 -14.24394 -13.99449 -13.95334 -13.48746 -13.47576 -13.09573 -12.90452 -12.74619 -12.55735 -12.51942 -12.29530 -12.11375 -12.00134 -11.73976 -11.64279 -11.58014 -11.49552 -11.30118 -11.19736 -11.18831 -11.04001 -11.02678 -10.57287 -10.53462 -10.40565 -10.21908 -9.71767 -9.69207 -9.08814 -9.05020 -8.71970 -8.18762 -6.24428 -4.24921 1.10544 1.62834 2.36669 3.20458 3.21861 3.28582 3.32794 3.48171 4.04478 4.28505 4.33636 4.54406 4.84572 4.96665 5.07494 5.08785 5.15054 5.23238 5.31591 5.32183 5.51527 5.56620 5.61269 5.65319 5.70027 5.76831 5.78988 5.88123 5.96487 6.02533 6.10891 6.17123 6.21069 6.23527 6.26311 6.36681 6.49213 6.49664 6.57248 6.69578 6.81543 7.05011 7.18536 7.40221 7.50509 8.32188 8.45299 8.76744 9.36731 10.86569 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.005429 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.620477 B = 5156.442581 C = 6258.621889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.042 3.958 4 N -0.373 5.373 5 O 0.091 5.909 6 C -0.018 4.018 7 C -0.045 4.045 8 C -0.150 4.150 9 C -0.196 4.196 10 C 0.193 3.807 11 N -1.125 6.125 12 S 2.786 3.214 13 O -0.996 6.996 14 O -0.982 6.982 15 N -0.986 5.986 16 C 0.130 3.870 17 C -0.170 4.170 18 C 0.212 3.788 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.080 3.920 22 N -0.887 5.887 23 Si 0.865 3.135 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.264 1.264 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.408 0.592 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.044 0.956 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 1.867 -4.234 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.117 4.117 4 N -0.079 5.079 5 O 0.028 5.972 6 C -0.083 4.083 7 C -0.083 4.083 8 C -0.207 4.207 9 C -0.201 4.201 10 C 0.067 3.933 11 N -0.884 5.884 12 S 2.794 3.206 13 O -0.980 6.980 14 O -0.966 6.966 15 N -0.827 5.827 16 C 0.004 3.996 17 C -0.229 4.229 18 C 0.088 3.912 19 C -0.582 4.582 20 H 0.103 0.897 21 C -0.124 4.124 22 N -0.524 5.524 23 Si 0.691 3.309 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.189 1.189 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.240 0.760 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.110 2.240 -4.953 10.608 hybrid contribution -0.589 0.037 0.980 1.144 sum 8.520 2.277 -3.972 9.673 Atomic orbital electron populations 1.21708 0.93054 1.02638 1.02977 1.19973 0.97210 0.87754 1.03373 1.23516 1.00682 0.99278 0.88229 1.73810 1.17433 0.92726 1.23945 1.84774 1.62919 1.26972 1.22503 1.24356 1.01479 0.98786 0.83695 1.20164 0.97638 0.91543 0.98993 1.21779 0.93781 1.03038 1.02124 1.21043 1.07839 0.93634 0.97580 1.19695 0.86366 1.00358 0.86858 1.56013 1.27505 1.78069 1.26811 1.01697 0.72542 0.73585 0.72761 1.93563 1.40380 1.78024 1.86006 1.93561 1.84984 1.41726 1.76315 1.57512 1.31446 1.17294 1.76433 1.21004 1.00500 0.81504 0.96580 1.22211 1.01137 1.01018 0.98560 1.19599 0.79884 0.95601 0.96083 1.21394 0.92745 1.39606 1.04491 0.89749 1.24814 0.96268 0.95153 0.96151 1.69866 1.02694 1.46014 1.33859 0.87019 0.78098 0.80983 0.84761 1.19743 1.21101 1.18858 0.90441 0.93314 0.91757 0.90800 0.89237 0.89488 0.88018 0.91988 0.92294 0.91207 0.89575 0.86857 0.76014 0.89652 0.91684 0.92305 0.92170 0.92650 0.94764 0.93840 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.89 37.16 0.37 -1.84 16 2 C -0.04 -0.64 6.44 -27.89 -0.18 -0.82 16 3 C 0.04 0.67 6.58 -82.10 -0.54 0.13 16 4 N -0.37 -6.06 12.07 33.42 0.40 -5.65 16 5 O 0.09 1.38 11.20 17.18 0.19 1.57 16 6 C -0.02 -0.26 6.74 -35.30 -0.24 -0.50 16 7 C -0.05 -0.51 6.35 -27.88 -0.18 -0.68 16 8 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 9 C -0.20 -3.03 5.72 -104.42 -0.60 -3.62 16 10 C 0.19 3.19 6.48 -5.20 -0.03 3.16 16 11 N -1.13 -17.27 6.05 -11.66 -0.07 -17.34 16 12 S 2.79 49.95 6.11 -107.50 -0.66 49.29 16 13 O -1.00 -18.71 17.08 -57.17 -0.98 -19.69 16 14 O -0.98 -20.17 16.09 -57.17 -0.92 -21.09 16 15 N -0.99 -18.14 2.84 -115.66 -0.33 -18.47 16 16 C 0.13 2.07 6.01 -4.04 -0.02 2.04 16 17 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 18 C 0.21 4.51 4.54 -5.20 -0.02 4.49 16 19 C -0.54 -12.83 8.51 -34.44 -0.29 -13.12 16 20 H 0.08 2.08 6.97 -52.49 -0.37 1.71 16 21 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 22 N -0.89 -23.66 13.96 55.43 0.77 -22.88 16 23 Si 0.86 19.58 27.40 -169.99 -4.66 14.92 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.26 -5.78 6.64 56.52 0.38 -5.41 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.17 7.44 -51.93 -0.39 0.79 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.48 7.03 -51.93 -0.36 1.12 16 38 H 0.11 2.13 5.58 -51.93 -0.29 1.84 16 39 H 0.41 5.43 8.65 -34.47 -0.30 5.13 16 40 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 41 H 0.06 0.93 7.65 -51.93 -0.40 0.53 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 45 H 0.03 0.73 7.43 -51.93 -0.39 0.34 16 46 H 0.04 0.97 6.07 -51.93 -0.32 0.66 16 47 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -29.17 397.35 -8.80 -37.96 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.45 Total: 7.48 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.09 Total: -12.09 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: 0.78 Total: -64.35 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.70 Total: -39.21 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.66 Total: 14.92 kcal Atomic # 16 Polarization: 49.95 SS G_CDS: -0.66 Total: 49.29 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.17 -8.80 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.062 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds