Wall clock time and date at job start Wed Apr 1 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47328 * 2 1 4 4 N 1.30177 * 126.79851 * 270.02564 * 3 2 1 5 5 O 1.20920 * 111.60192 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56987 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.78041 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47427 * 269.95935 * 7 6 5 9 9 C 1.35455 * 106.44775 * 0.02562 * 6 5 4 10 10 C 1.50692 * 128.00976 * 180.26726 * 9 6 5 11 11 N 1.46504 * 109.46772 * 269.67205 * 10 9 6 12 12 S 1.65608 * 119.99773 * 164.39360 * 11 10 9 13 13 O 1.42099 * 106.39942 * 179.02896 * 12 11 10 14 14 O 1.42099 * 106.40328 * 311.94807 * 12 11 10 15 15 N 1.65594 * 107.21665 * 65.49261 * 12 11 10 16 16 C 1.46503 * 120.00127 * 89.76496 * 15 12 11 17 17 C 1.53004 * 109.47212 * 93.98641 * 16 15 12 18 18 C 1.46504 * 119.99941 * 269.75914 * 15 12 11 19 19 C 1.50690 * 109.46957 * 100.86692 * 18 15 12 20 20 H 1.07997 * 120.00287 * 3.37819 * 19 18 15 21 21 C 1.37880 * 119.99964 * 183.37429 * 19 18 15 22 22 N 1.31513 * 120.00110 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99822 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46973 * 90.00097 * 23 21 19 25 25 H 1.48499 * 109.47076 * 209.99648 * 23 21 19 26 26 H 1.48497 * 109.47129 * 330.00076 * 23 21 19 27 27 H 1.09000 * 109.47619 * 300.00520 * 1 2 3 28 28 H 1.09003 * 109.47068 * 60.00621 * 1 2 3 29 29 H 1.09002 * 109.47286 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47208 * 239.99599 * 2 1 3 31 31 H 1.09003 * 109.47068 * 119.99379 * 2 1 3 32 32 H 1.08997 * 109.47125 * 29.95872 * 7 6 5 33 33 H 1.09003 * 109.47237 * 149.95654 * 7 6 5 34 34 H 1.08997 * 109.46916 * 300.00064 * 8 7 6 35 35 H 1.09003 * 109.47142 * 59.99660 * 8 7 6 36 36 H 1.09002 * 109.47283 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47348 * 29.66764 * 10 9 6 38 38 H 1.08998 * 109.47707 * 149.67195 * 10 9 6 39 39 H 0.96997 * 120.00401 * 344.38937 * 11 10 9 40 40 H 1.09003 * 109.46889 * 213.98752 * 16 15 12 41 41 H 1.08991 * 109.46946 * 333.98666 * 16 15 12 42 42 H 1.08999 * 109.46775 * 65.05185 * 17 16 15 43 43 H 1.08994 * 109.46802 * 185.05081 * 17 16 15 44 44 H 1.08997 * 109.47175 * 305.05131 * 17 16 15 45 45 H 1.09000 * 109.46987 * 220.87334 * 18 15 12 46 46 H 1.09003 * 109.47060 * 340.86745 * 18 15 12 47 47 H 0.97001 * 120.00229 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2918 2.1561 -1.0424 5 8 2.6805 3.2564 -0.7254 6 6 2.7298 3.3968 0.6067 7 6 3.1621 4.6225 1.3694 8 6 4.6685 4.5570 1.6288 9 6 2.3143 2.2195 1.1320 10 6 2.1774 1.8491 2.5863 11 7 3.4339 1.2647 3.0617 12 16 3.7171 1.1198 4.6869 13 8 4.9913 0.5048 4.8189 14 8 3.3984 2.3788 5.2635 15 7 2.6125 0.0395 5.2825 16 6 2.9304 -1.3902 5.3156 17 6 3.5102 -1.7523 6.6845 18 6 1.3172 0.5134 5.7766 19 6 0.2617 0.2742 4.7281 20 1 0.5176 -0.2341 3.8102 21 6 -1.0310 0.7041 4.9406 22 7 -1.9524 0.4949 4.0258 23 14 -1.4737 1.5838 6.5280 24 1 -1.2800 3.0458 6.3543 25 1 -2.8932 1.3095 6.8667 26 1 -0.5997 1.0956 7.6248 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.9324 5.5137 0.7854 33 1 2.6311 4.6647 2.3205 34 1 4.8981 3.6658 2.2129 35 1 5.1994 4.5148 0.6777 36 1 4.9812 5.4438 2.1801 37 1 1.9487 2.7416 3.1686 38 1 1.3724 1.1234 2.7023 39 1 4.0999 0.9625 2.4245 40 1 2.0230 -1.9684 5.1408 41 1 3.6613 -1.6179 4.5398 42 1 2.7484 -1.6093 7.4509 43 1 3.8296 -2.7944 6.6796 44 1 4.3653 -1.1111 6.8980 45 1 1.0553 -0.0273 6.6860 46 1 1.3791 1.5800 5.9931 47 1 -2.8618 0.7977 4.1752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336907737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:11 Heat of formation + Delta-G solvation = -53.815776 kcal Electronic energy + Delta-G solvation = -30705.945470 eV Core-core repulsion = 26631.687398 eV Total energy + Delta-G solvation = -4074.258072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.97073 -38.37462 -37.81599 -37.57519 -36.89497 -35.99920 -34.90901 -34.55936 -32.29901 -31.75233 -31.14747 -28.87923 -27.46247 -25.53212 -24.54289 -24.51080 -23.14622 -22.54748 -20.73540 -20.35876 -19.08633 -18.70007 -18.53846 -18.48461 -17.89956 -17.27508 -16.54212 -16.18983 -16.06745 -15.49110 -15.39562 -15.06302 -14.80200 -14.63642 -14.54422 -14.22397 -14.15915 -13.96990 -13.76797 -13.71672 -13.49790 -13.36531 -13.17734 -13.06536 -13.01830 -12.72705 -12.68596 -12.58564 -12.47091 -12.31849 -12.17494 -12.09340 -12.04661 -11.68119 -11.64427 -11.52823 -10.92961 -10.67241 -10.44680 -10.26993 -9.73792 -8.19275 -6.20828 -0.34026 0.44425 1.11642 1.40003 1.46048 1.50764 2.01662 2.11220 2.40752 2.61308 3.12653 3.16248 3.40904 3.43664 3.81813 3.91569 3.97342 4.14180 4.22932 4.29108 4.35809 4.37095 4.44444 4.46876 4.49638 4.57628 4.72757 4.81963 4.85258 4.94497 4.98926 4.99446 5.01716 5.05336 5.07880 5.09133 5.13649 5.17179 5.31902 5.38657 5.42119 5.49125 5.55002 5.81676 6.12232 6.40360 6.83513 7.25850 7.42360 8.93430 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.005429 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.620477 B = 5156.442581 C = 6258.621889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 C 0.036 3.964 4 N -0.388 5.388 5 O 0.092 5.908 6 C -0.003 4.003 7 C -0.048 4.048 8 C -0.149 4.149 9 C -0.216 4.216 10 C 0.205 3.795 11 N -1.111 6.111 12 S 2.800 3.200 13 O -1.000 7.000 14 O -1.007 7.007 15 N -0.990 5.990 16 C 0.121 3.879 17 C -0.168 4.168 18 C 0.218 3.782 19 C -0.526 4.526 20 H 0.068 0.932 21 C 0.035 3.965 22 N -0.924 5.924 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.287 1.287 26 H -0.249 1.249 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.419 0.581 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.291 2.045 -4.067 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.123 4.123 4 N -0.095 5.095 5 O 0.030 5.970 6 C -0.068 4.068 7 C -0.086 4.086 8 C -0.206 4.206 9 C -0.222 4.222 10 C 0.079 3.921 11 N -0.872 5.872 12 S 2.808 3.192 13 O -0.985 6.985 14 O -0.991 6.991 15 N -0.830 5.830 16 C -0.004 4.004 17 C -0.227 4.227 18 C 0.093 3.907 19 C -0.565 4.565 20 H 0.086 0.914 21 C -0.165 4.165 22 N -0.563 5.563 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.173 1.173 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.254 0.746 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.571 2.401 -4.776 11.846 hybrid contribution -0.974 -0.029 0.865 1.302 sum 9.597 2.372 -3.911 10.632 Atomic orbital electron populations 1.21596 0.93861 1.02789 1.01266 1.19995 0.96329 0.87412 1.04313 1.23732 1.00522 0.99827 0.88233 1.73796 1.18262 0.93178 1.24254 1.84757 1.62736 1.26599 1.22868 1.24834 0.99545 0.99110 0.83313 1.20378 0.98266 0.91243 0.98754 1.21798 0.92953 1.03214 1.02684 1.20954 1.09686 0.94639 0.96888 1.19373 0.85850 0.99186 0.87675 1.55714 1.27461 1.77808 1.26217 1.01196 0.72157 0.72935 0.72941 1.93552 1.40564 1.78024 1.86310 1.93527 1.85298 1.43068 1.77185 1.57479 1.30224 1.18629 1.76672 1.21250 1.00978 0.79910 0.98262 1.22198 1.00586 1.02608 0.97286 1.19371 0.80511 0.95316 0.95493 1.21534 0.93001 1.37738 1.04223 0.91356 1.25395 0.96584 0.96203 0.98340 1.69975 1.02933 1.47913 1.35506 0.86344 0.77930 0.80002 0.82616 1.19892 1.21300 1.17303 0.93926 0.93055 0.90700 0.88939 0.89124 0.86810 0.88441 0.93556 0.91331 0.89322 0.90450 0.89259 0.74649 0.89977 0.89976 0.92634 0.89388 0.93419 0.94236 0.94577 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.89 71.98 0.71 -3.50 16 2 C -0.04 -1.20 6.44 29.85 0.19 -1.00 16 3 C 0.04 1.13 6.58 43.58 0.29 1.41 16 4 N -0.39 -12.27 12.07 -49.56 -0.60 -12.87 16 5 O 0.09 2.67 11.20 71.65 0.80 3.48 16 6 C 0.00 -0.08 6.74 25.04 0.17 0.09 16 7 C -0.05 -1.00 6.35 29.85 0.19 -0.81 16 8 C -0.15 -2.76 9.89 71.98 0.71 -2.05 16 9 C -0.22 -6.63 5.72 -19.74 -0.11 -6.75 16 10 C 0.21 6.84 6.48 85.63 0.55 7.40 16 11 N -1.11 -33.47 6.05 -190.80 -1.15 -34.62 16 12 S 2.80 97.89 6.11 -56.49 -0.34 97.54 16 13 O -1.00 -36.02 17.08 -128.00 -2.19 -38.21 16 14 O -1.01 -40.72 16.09 -128.00 -2.06 -42.78 16 15 N -0.99 -35.55 2.84 -519.84 -1.48 -37.03 16 16 C 0.12 3.66 6.01 86.38 0.52 4.18 16 17 C -0.17 -4.49 10.24 71.98 0.74 -3.75 16 18 C 0.22 9.14 4.54 85.63 0.39 9.53 16 19 C -0.53 -24.98 8.51 25.60 0.22 -24.76 16 20 H 0.07 3.43 6.97 -2.91 -0.02 3.41 16 21 C 0.04 1.78 5.47 84.66 0.46 2.25 16 22 N -0.92 -50.34 13.96 21.45 0.30 -50.05 16 23 Si 0.91 39.95 27.40 68.60 1.88 41.83 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.25 -10.31 6.64 99.48 0.66 -9.65 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.13 7.44 -2.39 -0.02 2.12 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 2.71 7.03 -2.39 -0.02 2.69 16 38 H 0.09 3.46 5.58 -2.39 -0.01 3.45 16 39 H 0.42 10.74 8.65 -96.75 -0.84 9.90 16 40 H 0.08 2.54 8.06 -2.39 -0.02 2.52 16 41 H 0.08 2.19 7.65 -2.39 -0.02 2.17 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 45 H 0.04 1.63 7.43 -2.39 -0.02 1.61 16 46 H 0.04 1.59 6.07 -2.39 -0.01 1.58 16 47 H 0.26 13.84 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -61.58 397.35 0.29 -61.30 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.10 Total: 29.17 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 5.03 Total: -17.76 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -2.93 Total: -134.57 kcal Atomic # 8 Polarization: -74.07 SS G_CDS: -3.44 Total: -77.51 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.88 Total: 41.83 kcal Atomic # 16 Polarization: 97.89 SS G_CDS: -0.34 Total: 97.54 kcal Total: -61.58 0.29 -61.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.483 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds