Wall clock time and date at job start Wed Apr 1 2020 04:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38746 * 120.05840 * 359.72194 * 3 2 1 5 5 C 1.38125 * 119.94295 * 179.74674 * 4 3 2 6 6 C 1.38283 * 120.05591 * 0.53376 * 5 4 3 7 7 C 1.38241 * 120.11360 * 359.74037 * 6 5 4 8 8 C 1.38169 * 120.05585 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03323 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47125 * 145.01818 * 9 8 7 11 11 N 1.46496 * 109.47108 * 25.01266 * 9 8 7 12 12 C 1.34773 * 120.00182 * 155.00073 * 11 9 8 13 13 O 1.21279 * 119.99678 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00497 * 180.02562 * 12 11 9 15 15 C 1.52989 * 109.47198 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47198 * 180.02562 * 15 14 12 17 17 H 1.08008 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00439 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00354 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46674 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46926 * 120.00093 * 20 18 16 23 23 H 1.48499 * 109.47444 * 240.00343 * 20 18 16 24 24 C 1.50705 * 109.46495 * 265.01997 * 9 8 7 25 25 N 1.29946 * 126.29078 * 74.68780 * 24 9 8 26 26 O 1.21299 * 110.25153 * 179.84104 * 25 24 9 27 27 C 1.33644 * 109.80986 * 0.42406 * 26 25 24 28 28 C 1.50701 * 126.55086 * 179.72022 * 27 26 25 29 29 N 1.31134 * 106.89987 * 359.73635 * 27 26 25 30 30 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 31 31 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 32 32 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.02813 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.97374 * 180.29271 * 5 4 3 35 35 H 1.08002 * 119.94724 * 179.76667 * 6 5 4 36 36 H 1.08003 * 119.97763 * 180.02562 * 7 6 5 37 37 H 0.97009 * 120.00218 * 335.00991 * 11 9 8 38 38 H 1.09000 * 109.46662 * 300.00691 * 14 12 11 39 39 H 1.09000 * 109.47029 * 60.00214 * 14 12 11 40 40 H 1.09000 * 109.47613 * 299.99784 * 15 14 12 41 41 H 1.09000 * 109.47220 * 60.00007 * 15 14 12 42 42 H 0.97006 * 120.00291 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46898 * 270.02365 * 28 27 26 44 44 H 1.09001 * 109.47147 * 30.02367 * 28 27 26 45 45 H 1.08998 * 109.47304 * 150.01988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 -0.0005 6 6 3.3018 3.6758 -0.0006 7 6 4.0559 2.5172 -0.0005 8 6 3.4311 1.2849 0.0002 9 6 4.2537 0.0222 0.0008 10 1 3.7466 -0.7415 0.5904 11 7 5.5690 0.2965 0.5847 12 6 6.2760 -0.7010 1.1517 13 8 5.8234 -1.8259 1.1782 14 6 7.6288 -0.4187 1.7529 15 6 8.2128 -1.7121 2.3243 16 6 9.5654 -1.4298 2.9260 17 1 9.9682 -0.4279 2.9027 18 6 10.2885 -2.4502 3.5062 19 7 9.7982 -3.6702 3.5341 20 14 11.9653 -2.1003 4.2514 21 1 12.2871 -0.6593 4.0915 22 1 11.9470 -2.4456 5.6955 23 1 12.9946 -2.9174 3.5600 24 6 4.4245 -0.4667 -1.4145 25 7 5.2059 0.0472 -2.3167 26 8 5.1182 -0.5771 -3.3530 27 6 4.2392 -1.5734 -3.2085 28 6 3.8383 -2.5760 -4.2597 29 7 3.7918 -1.5116 -1.9774 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2128 2.3203 -0.0100 34 1 1.3339 4.5114 -0.0003 35 1 3.7922 4.6381 -0.0002 36 1 5.1344 2.5753 -0.0001 37 1 5.9311 1.1963 0.5632 38 1 8.2943 -0.0290 0.9827 39 1 7.5256 0.3172 2.5503 40 1 7.5474 -2.1023 3.0944 41 1 8.3161 -2.4477 1.5266 42 1 10.3071 -4.3883 3.9420 43 1 2.9847 -2.1939 -4.8196 44 1 4.6736 -2.7430 -4.9399 45 1 3.5668 -3.5164 -3.7802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360361989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:29 Heat of formation + Delta-G solvation = 21.135291 kcal Electronic energy + Delta-G solvation = -30081.180392 eV Core-core repulsion = 25874.728491 eV Total energy + Delta-G solvation = -4206.451901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.50108 -40.70861 -39.22907 -37.71110 -36.20965 -34.96163 -33.43323 -33.10395 -31.67541 -30.75175 -30.45352 -28.92037 -27.75185 -27.19608 -25.41546 -23.74924 -22.75370 -22.41116 -21.79321 -20.52516 -19.73733 -18.38120 -18.06340 -17.56399 -16.97503 -16.51734 -16.22432 -16.02265 -15.50991 -15.50172 -15.04678 -14.82413 -14.55398 -14.36749 -14.08334 -13.84025 -13.61572 -13.43032 -13.27364 -12.91646 -12.74082 -12.36485 -12.17564 -12.16479 -12.05582 -11.73175 -11.51276 -11.38856 -11.13893 -11.06158 -10.93738 -10.92573 -10.56122 -9.94347 -9.87605 -9.65718 -9.25911 -9.16910 -9.09424 -9.00284 -8.45530 -8.30092 -5.93682 -3.98019 0.92416 1.14132 1.23163 2.29444 2.86531 3.00967 3.11333 3.28597 3.34454 3.41355 3.41599 3.45155 3.90148 4.15855 4.37221 4.49654 4.50757 4.69426 4.80390 4.88655 4.97077 5.01363 5.06439 5.07844 5.12261 5.24210 5.28617 5.37183 5.41252 5.45978 5.62205 5.75387 5.79566 5.97925 6.04380 6.13335 6.19233 6.23811 6.25362 6.44495 6.58728 6.89519 7.10018 7.76253 7.79094 7.88301 8.09366 8.25866 8.40421 8.72220 9.10354 9.65376 11.17310 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.002903 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.056754 B = 9642.309832 C =10859.135525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.148 3.852 4 C -0.209 4.209 5 C -0.074 4.074 6 C -0.154 4.154 7 C -0.064 4.064 8 C -0.127 4.127 9 C 0.290 3.710 10 H 0.128 0.872 11 N -0.734 5.734 12 C 0.511 3.489 13 O -0.522 6.522 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.177 3.823 25 N -0.373 5.373 26 O 0.074 5.926 27 C 0.166 3.834 28 C -0.058 4.058 29 N -0.460 5.460 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.400 0.600 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.260 0.740 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.236 13.004 -14.850 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.101 3.899 4 C -0.228 4.228 5 C -0.093 4.093 6 C -0.172 4.172 7 C -0.082 4.082 8 C -0.129 4.129 9 C 0.182 3.818 10 H 0.146 0.854 11 N -0.391 5.391 12 C 0.300 3.700 13 O -0.396 6.396 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.098 4.098 25 N -0.080 5.080 26 O 0.014 5.986 27 C -0.055 4.055 28 C -0.117 4.117 29 N -0.194 5.194 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.237 0.763 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.157 12.334 -14.239 28.328 hybrid contribution 0.825 0.613 0.221 1.052 sum -20.331 12.947 -14.018 27.884 Atomic orbital electron populations 1.23085 0.78267 1.04289 1.01060 1.86216 1.21387 1.25975 1.87886 1.18752 0.91185 0.84887 0.95036 1.21211 1.00094 0.92121 1.09385 1.20991 0.94701 0.96992 0.96570 1.21027 0.93869 0.98293 1.04061 1.20794 1.00129 0.90888 0.96396 1.18984 0.90639 0.94482 1.08777 1.17349 0.84898 0.94955 0.84591 0.85404 1.46374 1.18517 1.13124 1.61039 1.21745 0.87673 0.84170 0.76416 1.90700 1.70476 1.21926 1.56502 1.21884 0.90267 1.04298 1.00321 1.18906 0.94952 0.89730 0.96443 1.21249 1.02537 0.94943 1.37675 0.92516 1.25029 0.98089 0.95102 0.96200 1.70014 1.37897 1.00284 1.44601 0.86531 0.84208 0.78306 0.78897 1.19730 1.21010 1.21031 1.26005 0.93113 0.91318 0.99393 1.74547 1.21740 1.18041 0.93684 1.85264 1.48923 1.33699 1.30682 1.28832 0.89220 0.92633 0.94825 1.20338 1.03156 0.94546 0.93616 1.71882 1.25136 1.17721 1.04679 0.92582 0.92815 0.87924 0.85113 0.85546 0.85358 0.85121 0.76273 0.90118 0.89913 0.95688 0.95895 0.93019 0.88399 0.88558 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.30 -3.76 9.63 -19.44 -0.19 -3.95 16 3 C 0.15 1.82 6.66 -39.22 -0.26 1.56 16 4 C -0.21 -2.00 9.04 -39.44 -0.36 -2.36 16 5 C -0.07 -0.64 10.04 -39.61 -0.40 -1.04 16 6 C -0.15 -1.43 10.04 -39.56 -0.40 -1.82 16 7 C -0.06 -0.71 9.23 -39.61 -0.37 -1.08 16 8 C -0.13 -1.70 5.05 -104.47 -0.53 -2.23 16 9 C 0.29 4.73 2.45 -70.23 -0.17 4.56 16 10 H 0.13 2.39 7.13 -51.93 -0.37 2.02 16 11 N -0.73 -12.08 4.98 -56.07 -0.28 -12.36 16 12 C 0.51 10.67 7.79 -10.99 -0.09 10.59 16 13 O -0.52 -13.15 15.64 5.56 0.09 -13.06 16 14 C -0.13 -2.73 5.64 -27.89 -0.16 -2.89 16 15 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 16 C -0.53 -15.25 9.11 -34.44 -0.31 -15.57 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.91 13.29 55.43 0.74 -27.17 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.18 2.99 7.00 -156.37 -1.09 1.90 16 25 N -0.37 -6.13 12.15 30.90 0.38 -5.75 16 26 O 0.07 1.07 11.31 18.10 0.20 1.27 16 27 C 0.17 2.13 8.51 -13.06 -0.11 2.02 16 28 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 29 N -0.46 -7.50 11.55 -9.87 -0.11 -7.61 16 30 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 31 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.31 6.07 -52.48 -0.32 0.99 16 37 H 0.40 5.34 6.21 -40.82 -0.25 5.09 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.02 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -39.05 388.26 -7.27 -46.31 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.83 Total: 2.10 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.09 Total: -2.65 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.72 Total: -52.89 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.10 Total: -15.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.05 -7.27 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360361989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.449 kcal (2) G-P(sol) polarization free energy of solvation -39.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds