Wall clock time and date at job start Wed Apr 1 2020 04:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38746 * 120.05840 * 359.72194 * 3 2 1 5 5 C 1.38125 * 119.94295 * 179.74674 * 4 3 2 6 6 C 1.38283 * 120.05591 * 0.53376 * 5 4 3 7 7 C 1.38241 * 120.11360 * 359.74037 * 6 5 4 8 8 C 1.38169 * 120.05585 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03323 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47125 * 145.01818 * 9 8 7 11 11 N 1.46496 * 109.47108 * 25.01266 * 9 8 7 12 12 C 1.34773 * 120.00182 * 155.00073 * 11 9 8 13 13 O 1.21279 * 119.99678 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00497 * 180.02562 * 12 11 9 15 15 C 1.52989 * 109.47198 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47198 * 180.02562 * 15 14 12 17 17 H 1.08008 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00439 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00354 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46674 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46926 * 120.00093 * 20 18 16 23 23 H 1.48499 * 109.47444 * 240.00343 * 20 18 16 24 24 C 1.50705 * 109.46495 * 265.01997 * 9 8 7 25 25 N 1.29946 * 126.29078 * 74.68780 * 24 9 8 26 26 O 1.21299 * 110.25153 * 179.84104 * 25 24 9 27 27 C 1.33644 * 109.80986 * 0.42406 * 26 25 24 28 28 C 1.50701 * 126.55086 * 179.72022 * 27 26 25 29 29 N 1.31134 * 106.89987 * 359.73635 * 27 26 25 30 30 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 31 31 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 32 32 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.02813 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.97374 * 180.29271 * 5 4 3 35 35 H 1.08002 * 119.94724 * 179.76667 * 6 5 4 36 36 H 1.08003 * 119.97763 * 180.02562 * 7 6 5 37 37 H 0.97009 * 120.00218 * 335.00991 * 11 9 8 38 38 H 1.09000 * 109.46662 * 300.00691 * 14 12 11 39 39 H 1.09000 * 109.47029 * 60.00214 * 14 12 11 40 40 H 1.09000 * 109.47613 * 299.99784 * 15 14 12 41 41 H 1.09000 * 109.47220 * 60.00007 * 15 14 12 42 42 H 0.97006 * 120.00291 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46898 * 270.02365 * 28 27 26 44 44 H 1.09001 * 109.47147 * 30.02367 * 28 27 26 45 45 H 1.08998 * 109.47304 * 150.01988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 -0.0005 6 6 3.3018 3.6758 -0.0006 7 6 4.0559 2.5172 -0.0005 8 6 3.4311 1.2849 0.0002 9 6 4.2537 0.0222 0.0008 10 1 3.7466 -0.7415 0.5904 11 7 5.5690 0.2965 0.5847 12 6 6.2760 -0.7010 1.1517 13 8 5.8234 -1.8259 1.1782 14 6 7.6288 -0.4187 1.7529 15 6 8.2128 -1.7121 2.3243 16 6 9.5654 -1.4298 2.9260 17 1 9.9682 -0.4279 2.9027 18 6 10.2885 -2.4502 3.5062 19 7 9.7982 -3.6702 3.5341 20 14 11.9653 -2.1003 4.2514 21 1 12.2871 -0.6593 4.0915 22 1 11.9470 -2.4456 5.6955 23 1 12.9946 -2.9174 3.5600 24 6 4.4245 -0.4667 -1.4145 25 7 5.2059 0.0472 -2.3167 26 8 5.1182 -0.5771 -3.3530 27 6 4.2392 -1.5734 -3.2085 28 6 3.8383 -2.5760 -4.2597 29 7 3.7918 -1.5116 -1.9774 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2128 2.3203 -0.0100 34 1 1.3339 4.5114 -0.0003 35 1 3.7922 4.6381 -0.0002 36 1 5.1344 2.5753 -0.0001 37 1 5.9311 1.1963 0.5632 38 1 8.2943 -0.0290 0.9827 39 1 7.5256 0.3172 2.5503 40 1 7.5474 -2.1023 3.0944 41 1 8.3161 -2.4477 1.5266 42 1 10.3071 -4.3883 3.9420 43 1 2.9847 -2.1939 -4.8196 44 1 4.6736 -2.7430 -4.9399 45 1 3.5668 -3.5164 -3.7802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360361989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:28 Heat of formation + Delta-G solvation = -8.513107 kcal Electronic energy + Delta-G solvation = -30082.466043 eV Core-core repulsion = 25874.728491 eV Total energy + Delta-G solvation = -4207.737552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.66358 -41.66259 -40.70037 -38.61523 -37.39628 -36.19375 -35.60250 -34.24644 -33.22050 -32.31262 -31.21065 -29.76592 -28.87518 -28.08769 -27.30903 -24.89843 -24.10502 -23.41661 -23.06533 -21.80359 -21.24977 -19.45173 -19.13762 -18.85356 -18.63451 -17.71505 -17.58736 -16.94659 -16.90389 -16.62727 -16.44545 -16.31764 -15.66894 -15.50374 -15.36793 -14.96484 -14.59954 -14.24863 -14.21574 -14.19787 -14.03413 -13.98288 -13.46073 -13.29433 -13.04619 -12.99330 -12.86602 -12.66979 -12.46815 -12.37967 -12.12668 -12.06420 -11.99952 -11.88826 -11.69436 -11.33223 -11.07424 -10.82437 -10.64486 -10.55340 -10.02019 -9.24766 -8.20134 -6.34767 0.06111 0.20291 0.37533 1.10907 1.40794 1.42733 1.50099 1.56156 1.88584 1.92829 2.31367 2.41515 2.51856 2.85330 3.04554 3.12768 3.42937 3.74206 3.86450 3.93680 3.98298 4.18274 4.24806 4.35539 4.36747 4.40167 4.46002 4.47036 4.48125 4.57701 4.61372 4.65938 4.69508 4.85184 4.94870 5.00698 5.07069 5.10022 5.25795 5.37035 5.45929 5.48138 5.56461 5.75086 5.81132 6.13626 6.31617 6.38474 6.82607 7.10325 7.13907 7.35522 8.92959 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.002903 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.056754 B = 9642.309832 C =10859.135525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.129 3.871 4 C -0.208 4.208 5 C -0.067 4.067 6 C -0.152 4.152 7 C -0.075 4.075 8 C -0.154 4.154 9 C 0.295 3.705 10 H 0.092 0.908 11 N -0.711 5.711 12 C 0.513 3.487 13 O -0.577 6.577 14 C -0.116 4.116 15 C 0.044 3.956 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.977 3.023 21 H -0.252 1.252 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.162 3.838 25 N -0.389 5.389 26 O 0.073 5.927 27 C 0.178 3.822 28 C -0.058 4.058 29 N -0.501 5.501 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.417 0.583 38 H 0.104 0.896 39 H 0.113 0.887 40 H -0.015 1.015 41 H -0.021 1.021 42 H 0.263 0.737 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.383 16.263 -15.835 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.083 3.917 4 C -0.227 4.227 5 C -0.085 4.085 6 C -0.170 4.170 7 C -0.093 4.093 8 C -0.156 4.156 9 C 0.188 3.812 10 H 0.110 0.890 11 N -0.367 5.367 12 C 0.303 3.697 13 O -0.455 6.455 14 C -0.155 4.155 15 C 0.007 3.993 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.800 3.200 21 H -0.175 1.175 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.113 4.113 25 N -0.097 5.097 26 O 0.014 5.986 27 C -0.042 4.042 28 C -0.115 4.115 29 N -0.235 5.235 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.174 0.826 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.154 0.846 37 H 0.257 0.743 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.003 0.997 41 H -0.003 1.003 42 H 0.072 0.928 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.329 15.660 -15.252 30.541 hybrid contribution 0.730 -0.424 0.433 0.949 sum -20.599 15.236 -14.819 29.598 Atomic orbital electron populations 1.23338 0.76240 1.05322 1.02496 1.86181 1.23707 1.26812 1.88108 1.19000 0.91119 0.85789 0.95779 1.21540 1.01304 0.91478 1.08338 1.21464 0.94800 0.97851 0.94381 1.21388 0.94342 0.98569 1.02735 1.20957 1.00697 0.90855 0.96789 1.18937 0.91136 0.93694 1.11827 1.17194 0.84172 0.95913 0.83946 0.88985 1.46045 1.18434 1.12887 1.59351 1.21622 0.87731 0.84047 0.76341 1.90682 1.71644 1.24244 1.58892 1.21667 0.90663 1.01498 1.01718 1.18676 0.94848 0.91733 0.94082 1.21711 1.02854 0.95966 1.37501 0.90449 1.26172 1.03080 0.94662 0.96606 1.70195 1.40115 1.01713 1.45737 0.85231 0.77886 0.79176 0.77689 1.17518 1.20471 1.20600 1.26106 0.93622 0.91788 0.99770 1.74490 1.22183 1.18963 0.94083 1.85214 1.49298 1.34136 1.29986 1.29980 0.87193 0.92067 0.94912 1.20757 1.05238 0.92983 0.92541 1.71876 1.26774 1.18436 1.06434 0.91117 0.91223 0.87290 0.82611 0.82001 0.82557 0.84596 0.74259 0.87824 0.86939 0.99704 1.00297 0.92811 0.85275 0.85966 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.70 9.63 -92.48 -0.89 -9.59 16 3 C 0.13 3.20 6.66 22.51 0.15 3.35 16 4 C -0.21 -3.55 9.04 22.36 0.20 -3.35 16 5 C -0.07 -0.93 10.04 22.25 0.22 -0.71 16 6 C -0.15 -2.39 10.04 22.28 0.22 -2.17 16 7 C -0.07 -1.61 9.23 22.25 0.21 -1.40 16 8 C -0.15 -4.21 5.05 -19.77 -0.10 -4.31 16 9 C 0.30 10.23 2.45 43.50 0.11 10.34 16 10 H 0.09 3.81 7.13 -2.39 -0.02 3.80 16 11 N -0.71 -24.26 4.98 -449.69 -2.24 -26.50 16 12 C 0.51 22.51 7.79 87.66 0.68 23.19 16 13 O -0.58 -31.34 15.64 -3.03 -0.05 -31.38 16 14 C -0.12 -5.03 5.64 29.84 0.17 -4.86 16 15 C 0.04 2.58 4.26 29.84 0.13 2.71 16 16 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 17 H 0.08 4.13 7.74 -2.91 -0.02 4.10 16 18 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 19 N -0.94 -60.89 13.29 21.45 0.28 -60.61 16 20 Si 0.98 45.27 29.54 68.60 2.03 47.29 16 21 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 C 0.16 5.75 7.00 138.46 0.97 6.72 16 25 N -0.39 -13.08 12.15 -60.32 -0.73 -13.82 16 26 O 0.07 2.12 11.31 74.83 0.85 2.96 16 27 C 0.18 4.60 8.51 88.38 0.75 5.35 16 28 C -0.06 -0.68 10.51 71.24 0.75 0.06 16 29 N -0.50 -17.12 11.55 -303.19 -3.50 -20.62 16 30 H 0.07 0.81 7.67 -2.39 -0.02 0.80 16 31 H 0.07 0.78 7.65 -2.39 -0.02 0.77 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.16 1.75 6.30 -2.91 -0.02 1.73 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.14 2.59 6.07 -2.91 -0.02 2.57 16 37 H 0.42 11.10 6.21 -92.70 -0.58 10.53 16 38 H 0.10 4.02 8.14 -2.39 -0.02 4.01 16 39 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 40 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 41 H -0.02 -1.42 8.10 -2.39 -0.02 -1.44 16 42 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 43 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -91.94 388.26 2.47 -89.47 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.46 Total: 18.03 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.27 Total: 4.76 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -6.19 Total: -121.54 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.09 Total: -38.01 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -91.94 2.47 -89.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360361989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.956 kcal (2) G-P(sol) polarization free energy of solvation -91.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds