Wall clock time and date at job start Wed Apr 1 2020 03:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.53482 * 2 1 4 4 N 1.47307 * 110.60031 * 122.83221 * 2 1 3 5 5 C 1.34531 * 106.62079 * 118.52413 * 4 2 1 6 6 O 1.21529 * 123.77127 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.45547 * 0.02562 * 5 4 2 8 8 C 1.40204 * 124.17657 * 179.97438 * 7 5 4 9 9 C 1.38888 * 120.03052 * 354.09743 * 8 7 5 10 10 C 1.38148 * 120.07730 * 179.97438 * 9 8 7 11 11 C 1.38176 * 120.13313 * 0.02562 * 10 9 8 12 12 C 1.38887 * 120.05986 * 359.97438 * 11 10 9 13 13 N 1.39934 * 120.03722 * 180.02562 * 12 11 10 14 14 C 1.34783 * 119.99676 * 34.68296 * 13 12 11 15 15 O 1.21286 * 119.99860 * 5.49921 * 14 13 12 16 16 C 1.50697 * 119.99716 * 185.50292 * 14 13 12 17 17 C 1.52996 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47358 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99886 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00044 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99747 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47054 * 60.00335 * 22 20 18 24 24 H 1.48501 * 109.46853 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46862 * 300.00150 * 22 20 18 26 26 C 1.38683 * 120.02955 * 173.81561 * 8 7 5 27 27 C 1.35122 * 111.69178 * 0.08676 * 7 5 4 28 28 O 1.21231 * 127.34132 * 179.97438 * 27 7 5 29 29 H 1.09001 * 109.46713 * 60.69605 * 1 2 3 30 30 H 1.08998 * 109.47125 * 180.69770 * 1 2 3 31 31 H 1.09003 * 109.46726 * 300.70420 * 1 2 3 32 32 H 1.08998 * 109.47475 * 59.30112 * 3 2 1 33 33 H 1.08998 * 109.47344 * 179.30270 * 3 2 1 34 34 H 1.08999 * 109.47377 * 299.29704 * 3 2 1 35 35 H 0.96995 * 126.68988 * 298.49184 * 4 2 1 36 36 H 1.08001 * 119.96164 * 359.97438 * 9 8 7 37 37 H 1.08004 * 119.93135 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.96791 * 179.97438 * 11 10 9 39 39 H 0.96993 * 120.00320 * 214.67983 * 13 12 11 40 40 H 1.09009 * 109.46988 * 299.99682 * 16 14 13 41 41 H 1.08999 * 109.47231 * 59.99593 * 16 14 13 42 42 H 1.08999 * 109.47443 * 300.00269 * 17 16 14 43 43 H 1.09006 * 109.46759 * 59.99867 * 17 16 14 44 44 H 0.97001 * 119.99861 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.06770 * 0.02697 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7476 1.1586 5 6 2.7600 -1.7772 0.6652 6 8 3.3291 -2.5982 1.3573 7 7 2.7720 -1.7955 -0.6725 8 6 3.4390 -2.7600 -1.4410 9 6 4.2449 -3.7066 -0.8216 10 6 4.9022 -4.6576 -1.5778 11 6 4.7607 -4.6701 -2.9523 12 6 3.9563 -3.7262 -3.5775 13 7 3.8129 -3.7396 -4.9694 14 6 3.8072 -4.9117 -5.6349 15 8 3.8258 -5.9576 -5.0212 16 6 3.7778 -4.9224 -7.1416 17 6 3.7777 -6.3684 -7.6414 18 6 3.7477 -6.3791 -9.1480 19 1 3.7309 -5.4477 -9.6945 20 6 3.7428 -7.5781 -9.8289 21 7 3.7638 -8.7122 -9.1635 22 14 3.7063 -7.5914 -11.6966 23 1 4.9039 -6.8865 -12.2201 24 1 3.7061 -8.9949 -12.1816 25 1 2.4794 -6.9034 -12.1725 26 6 3.2902 -2.7733 -2.8197 27 6 2.0640 -0.7687 -1.1924 28 8 1.8893 -0.5153 -2.3650 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5248 0.8836 32 1 1.7029 1.9571 0.8836 33 1 3.1565 1.4126 0.0125 34 1 1.7233 1.9494 -0.8962 35 1 1.9049 -0.5381 2.0948 36 1 4.3578 -3.6991 0.2525 37 1 5.5279 -5.3929 -1.0937 38 1 5.2762 -5.4147 -3.5409 39 1 3.7176 -2.9056 -5.4552 40 1 2.8776 -4.4167 -7.4910 41 1 4.6572 -4.4056 -7.5258 42 1 4.6780 -6.8737 -7.2919 43 1 2.8984 -6.8855 -7.2571 44 1 3.7600 -9.5557 -9.6426 45 1 2.6608 -2.0407 -3.3031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360445717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:22 Heat of formation + Delta-G solvation = -44.698802 kcal Electronic energy + Delta-G solvation = -29423.516868 eV Core-core repulsion = 25214.210187 eV Total energy + Delta-G solvation = -4209.306682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.30943 -40.22351 -39.24988 -38.53647 -37.05588 -35.79501 -34.28324 -33.50381 -32.09134 -31.16121 -30.42164 -29.25168 -28.22259 -25.84007 -25.22850 -24.17344 -22.78648 -22.34211 -20.96601 -20.77347 -19.70299 -18.49065 -17.76281 -17.37772 -16.99630 -16.56609 -16.40187 -16.15960 -15.75262 -15.50315 -15.15257 -15.03508 -14.70008 -14.44809 -14.24061 -14.19401 -13.80793 -13.35727 -13.20765 -13.13854 -12.95469 -12.92945 -12.47903 -12.31698 -12.23861 -12.19784 -11.80168 -11.29509 -11.21051 -10.92276 -10.74561 -10.63672 -10.29434 -10.14244 -10.01688 -9.98515 -9.70846 -9.25786 -9.09489 -8.62842 -8.33733 -7.96850 -5.97331 -4.02083 0.93495 1.25427 1.30629 1.62790 2.48326 2.59553 3.08361 3.21286 3.34235 3.37026 3.39434 3.42175 3.83933 3.86573 4.05864 4.46454 4.55271 4.81322 4.81532 4.84793 4.88315 4.95791 5.00580 5.20425 5.27771 5.32396 5.37099 5.37630 5.40210 5.50139 5.68529 5.95402 6.05627 6.14995 6.15893 6.21302 6.38183 6.52774 6.56581 6.70410 6.82335 6.87367 7.08259 7.61522 7.67932 7.72078 7.81949 8.04208 8.34860 8.58768 9.05619 9.61562 11.13522 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002030 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.386755 B =13792.900183 C =14688.640207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 C -0.148 4.148 4 N -0.718 5.718 5 C 0.705 3.295 6 O -0.526 6.526 7 N -0.516 5.516 8 C 0.141 3.859 9 C -0.156 4.156 10 C -0.081 4.081 11 C -0.125 4.125 12 C 0.178 3.822 13 N -0.685 5.685 14 C 0.510 3.490 15 O -0.511 6.511 16 C -0.129 4.129 17 C 0.037 3.963 18 C -0.529 4.529 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.171 4.171 27 C 0.527 3.473 28 O -0.445 6.445 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.442 0.558 36 H 0.159 0.841 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.410 0.590 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 23.863 23.448 33.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.029 3.971 3 C -0.206 4.206 4 N -0.383 5.383 5 C 0.406 3.594 6 O -0.399 6.399 7 N -0.254 5.254 8 C 0.051 3.949 9 C -0.176 4.176 10 C -0.101 4.101 11 C -0.145 4.145 12 C 0.082 3.918 13 N -0.332 5.332 14 C 0.300 3.700 15 O -0.384 6.384 16 C -0.169 4.169 17 C -0.001 4.001 18 C -0.567 4.567 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.193 4.193 27 C 0.314 3.686 28 O -0.312 6.312 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.287 0.713 36 H 0.176 0.824 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.246 0.754 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.094 22.526 23.445 32.770 hybrid contribution -0.213 0.446 -0.842 0.976 sum -4.307 22.972 22.603 32.514 Atomic orbital electron populations 1.22038 0.89668 1.04203 1.04768 1.21510 0.97524 0.94329 0.83723 1.22028 1.02259 0.91536 1.04766 1.45685 1.54861 1.28553 1.09224 1.15761 0.80047 0.82507 0.81065 1.90911 1.47675 1.40694 1.60600 1.43766 1.47364 1.26577 1.07725 1.17358 0.96999 0.90958 0.89624 1.21618 0.98139 0.95174 1.02650 1.20953 0.98519 0.97569 0.93017 1.21368 0.98361 0.99680 0.95136 1.17503 0.94582 0.95782 0.83906 1.43966 1.73970 1.10745 1.04499 1.21863 0.73988 0.82217 0.91965 1.90695 1.46223 1.31508 1.69954 1.21919 1.02947 1.05043 0.86953 1.18916 0.98745 0.87305 0.95108 1.21159 1.51692 0.92392 0.91473 0.92582 1.25026 0.95245 0.95664 0.98436 1.69981 1.49935 0.97325 1.35508 0.86635 0.78561 0.76979 0.85654 1.20226 1.21284 1.20239 1.21018 1.03345 1.03567 0.91418 1.20984 0.77318 0.80064 0.90222 1.90739 1.55699 1.68364 1.16435 0.89404 0.91143 0.89893 0.89912 0.91205 0.89421 0.71299 0.82389 0.84862 0.84215 0.75434 0.89828 0.89683 0.95696 0.95721 0.92847 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 8.98 37.16 0.33 -0.19 16 2 C 0.12 0.62 1.37 -132.09 -0.18 0.44 16 3 C -0.15 -0.46 8.98 37.16 0.33 -0.13 16 4 N -0.72 -3.96 5.90 -52.94 -0.31 -4.28 16 5 C 0.71 7.11 8.54 -88.02 -0.75 6.36 16 6 O -0.53 -6.74 14.65 5.34 0.08 -6.66 16 7 N -0.52 -5.73 2.84 -64.28 -0.18 -5.92 16 8 C 0.14 1.90 6.56 -83.62 -0.55 1.35 16 9 C -0.16 -2.10 9.25 -39.37 -0.36 -2.46 16 10 C -0.08 -1.10 10.03 -39.64 -0.40 -1.50 16 11 C -0.12 -1.96 8.65 -39.36 -0.34 -2.30 16 12 C 0.18 2.75 6.25 -83.72 -0.52 2.22 16 13 N -0.69 -10.36 5.34 -9.88 -0.05 -10.42 16 14 C 0.51 9.78 7.55 -10.98 -0.08 9.70 16 15 O -0.51 -11.80 13.77 5.55 0.08 -11.72 16 16 C -0.13 -2.56 5.64 -27.89 -0.16 -2.72 16 17 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 18 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 22 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.17 -2.40 9.24 -39.22 -0.36 -2.76 16 27 C 0.53 4.99 6.86 -10.39 -0.07 4.92 16 28 O -0.44 -5.07 15.09 5.60 0.08 -4.99 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.44 1.19 8.96 -40.82 -0.37 0.83 16 36 H 0.16 2.12 5.17 -52.49 -0.27 1.85 16 37 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.14 2.42 6.52 -52.48 -0.34 2.08 16 39 H 0.41 4.81 8.82 -40.82 -0.36 4.44 16 40 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.15 2.04 5.37 -52.49 -0.28 1.76 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -36.60 378.76 -8.34 -44.94 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.81 Total: 3.15 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.64 Total: 0.17 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.19 Total: -47.22 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.24 Total: -23.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.60 -8.34 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360445717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.237 kcal (2) G-P(sol) polarization free energy of solvation -36.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds