Wall clock time and date at job start Wed Apr 1 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.53482 * 2 1 4 4 N 1.47307 * 110.60031 * 122.83221 * 2 1 3 5 5 C 1.34531 * 106.62079 * 118.52413 * 4 2 1 6 6 O 1.21529 * 123.77127 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.45547 * 0.02562 * 5 4 2 8 8 C 1.40204 * 124.17657 * 179.97438 * 7 5 4 9 9 C 1.38888 * 120.03052 * 354.09743 * 8 7 5 10 10 C 1.38148 * 120.07730 * 179.97438 * 9 8 7 11 11 C 1.38176 * 120.13313 * 0.02562 * 10 9 8 12 12 C 1.38887 * 120.05986 * 359.97438 * 11 10 9 13 13 N 1.39934 * 120.03722 * 180.02562 * 12 11 10 14 14 C 1.34783 * 119.99676 * 34.68296 * 13 12 11 15 15 O 1.21286 * 119.99860 * 5.49921 * 14 13 12 16 16 C 1.50697 * 119.99716 * 185.50292 * 14 13 12 17 17 C 1.52996 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47358 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99886 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00044 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99747 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47054 * 60.00335 * 22 20 18 24 24 H 1.48501 * 109.46853 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46862 * 300.00150 * 22 20 18 26 26 C 1.38683 * 120.02955 * 173.81561 * 8 7 5 27 27 C 1.35122 * 111.69178 * 0.08676 * 7 5 4 28 28 O 1.21231 * 127.34132 * 179.97438 * 27 7 5 29 29 H 1.09001 * 109.46713 * 60.69605 * 1 2 3 30 30 H 1.08998 * 109.47125 * 180.69770 * 1 2 3 31 31 H 1.09003 * 109.46726 * 300.70420 * 1 2 3 32 32 H 1.08998 * 109.47475 * 59.30112 * 3 2 1 33 33 H 1.08998 * 109.47344 * 179.30270 * 3 2 1 34 34 H 1.08999 * 109.47377 * 299.29704 * 3 2 1 35 35 H 0.96995 * 126.68988 * 298.49184 * 4 2 1 36 36 H 1.08001 * 119.96164 * 359.97438 * 9 8 7 37 37 H 1.08004 * 119.93135 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.96791 * 179.97438 * 11 10 9 39 39 H 0.96993 * 120.00320 * 214.67983 * 13 12 11 40 40 H 1.09009 * 109.46988 * 299.99682 * 16 14 13 41 41 H 1.08999 * 109.47231 * 59.99593 * 16 14 13 42 42 H 1.08999 * 109.47443 * 300.00269 * 17 16 14 43 43 H 1.09006 * 109.46759 * 59.99867 * 17 16 14 44 44 H 0.97001 * 119.99861 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.06770 * 0.02697 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7476 1.1586 5 6 2.7600 -1.7772 0.6652 6 8 3.3291 -2.5982 1.3573 7 7 2.7720 -1.7955 -0.6725 8 6 3.4390 -2.7600 -1.4410 9 6 4.2449 -3.7066 -0.8216 10 6 4.9022 -4.6576 -1.5778 11 6 4.7607 -4.6701 -2.9523 12 6 3.9563 -3.7262 -3.5775 13 7 3.8129 -3.7396 -4.9694 14 6 3.8072 -4.9117 -5.6349 15 8 3.8258 -5.9576 -5.0212 16 6 3.7778 -4.9224 -7.1416 17 6 3.7777 -6.3684 -7.6414 18 6 3.7477 -6.3791 -9.1480 19 1 3.7309 -5.4477 -9.6945 20 6 3.7428 -7.5781 -9.8289 21 7 3.7638 -8.7122 -9.1635 22 14 3.7063 -7.5914 -11.6966 23 1 4.9039 -6.8865 -12.2201 24 1 3.7061 -8.9949 -12.1816 25 1 2.4794 -6.9034 -12.1725 26 6 3.2902 -2.7733 -2.8197 27 6 2.0640 -0.7687 -1.1924 28 8 1.8893 -0.5153 -2.3650 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5248 0.8836 32 1 1.7029 1.9571 0.8836 33 1 3.1565 1.4126 0.0125 34 1 1.7233 1.9494 -0.8962 35 1 1.9049 -0.5381 2.0948 36 1 4.3578 -3.6991 0.2525 37 1 5.5279 -5.3929 -1.0937 38 1 5.2762 -5.4147 -3.5409 39 1 3.7176 -2.9056 -5.4552 40 1 2.8776 -4.4167 -7.4910 41 1 4.6572 -4.4056 -7.5258 42 1 4.6780 -6.8737 -7.2919 43 1 2.8984 -6.8855 -7.2571 44 1 3.7600 -9.5557 -9.6426 45 1 2.6608 -2.0407 -3.3031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360445717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:21 Heat of formation + Delta-G solvation = -70.870500 kcal Electronic energy + Delta-G solvation = -29424.651758 eV Core-core repulsion = 25214.210187 eV Total energy + Delta-G solvation = -4210.441572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.05590 -41.57224 -40.05064 -39.75265 -37.82333 -36.78052 -35.59832 -35.50617 -33.11816 -32.60310 -31.50733 -30.50985 -28.46874 -27.75310 -26.01895 -25.25484 -24.05552 -23.62529 -22.13597 -21.68727 -21.06359 -19.38817 -18.95804 -18.61530 -18.12687 -17.71497 -17.46822 -17.19496 -16.86090 -16.70741 -16.59313 -16.38823 -15.61490 -15.53250 -15.48017 -15.05947 -14.78825 -14.71212 -14.36766 -14.19087 -13.94777 -13.76790 -13.47025 -13.29280 -13.16901 -13.13513 -12.81459 -12.78008 -12.61551 -12.52540 -12.34218 -11.93103 -11.67859 -11.63812 -11.37888 -11.31910 -11.04956 -10.81760 -10.67156 -10.55774 -9.73497 -9.18111 -8.18098 -6.32071 -0.04927 0.13190 0.40126 0.85473 1.42426 1.46842 1.53697 1.54479 1.81232 1.94860 2.00679 2.43554 2.66764 2.70304 3.15047 3.41951 3.70704 3.74719 3.81428 3.85464 3.98311 4.08400 4.22050 4.36336 4.42761 4.51562 4.53568 4.59238 4.66381 4.72250 4.77713 4.88879 5.02802 5.08152 5.10789 5.18586 5.21090 5.32313 5.38658 5.49604 5.61392 5.73192 5.83112 5.84746 5.88061 6.16071 6.16462 6.39142 6.85575 6.92427 7.13599 7.38047 8.94264 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002030 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.386755 B =13792.900183 C =14688.640207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.131 3.869 3 C -0.145 4.145 4 N -0.691 5.691 5 C 0.699 3.301 6 O -0.558 6.558 7 N -0.525 5.525 8 C 0.141 3.859 9 C -0.155 4.155 10 C -0.077 4.077 11 C -0.145 4.145 12 C 0.162 3.838 13 N -0.664 5.664 14 C 0.514 3.486 15 O -0.559 6.559 16 C -0.116 4.116 17 C 0.042 3.958 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.289 1.289 25 H -0.262 1.262 26 C -0.167 4.167 27 C 0.517 3.483 28 O -0.467 6.467 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.458 0.542 36 H 0.163 0.837 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.428 0.572 40 H 0.110 0.890 41 H 0.112 0.888 42 H -0.014 1.014 43 H -0.017 1.017 44 H 0.263 0.737 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 27.455 23.790 36.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.041 3.959 3 C -0.203 4.203 4 N -0.357 5.357 5 C 0.400 3.600 6 O -0.434 6.434 7 N -0.263 5.263 8 C 0.049 3.951 9 C -0.175 4.175 10 C -0.096 4.096 11 C -0.166 4.166 12 C 0.066 3.934 13 N -0.311 5.311 14 C 0.305 3.695 15 O -0.436 6.436 16 C -0.156 4.156 17 C 0.004 3.996 18 C -0.581 4.581 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.214 1.214 25 H -0.187 1.187 26 C -0.189 4.189 27 C 0.306 3.694 28 O -0.337 6.337 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.306 0.694 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.136 0.864 39 H 0.267 0.733 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.004 0.996 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.193 26.240 23.823 35.819 hybrid contribution 0.095 -0.602 -0.820 1.022 sum -5.098 25.638 23.002 34.819 Atomic orbital electron populations 1.22107 0.87744 1.03995 1.06610 1.21678 0.98604 0.94554 0.81075 1.22094 1.01768 0.89816 1.06582 1.45607 1.53070 1.26822 1.10233 1.15923 0.80384 0.83144 0.80550 1.90883 1.49294 1.42188 1.61018 1.43964 1.47501 1.26578 1.08262 1.17514 0.96559 0.91273 0.89801 1.21733 0.97938 0.95052 1.02787 1.21164 0.98342 0.97865 0.92194 1.21319 0.99453 0.99830 0.96007 1.17612 0.95447 0.96519 0.83793 1.43570 1.72597 1.10267 1.04674 1.21651 0.73551 0.82572 0.91761 1.90687 1.48790 1.33478 1.70652 1.21682 1.05499 1.00879 0.87520 1.18701 0.94948 0.90936 0.95010 1.21672 1.50887 0.93317 0.92270 0.90462 1.26139 0.94666 0.95193 1.04494 1.70167 1.51356 0.98183 1.37984 0.85372 0.79475 0.77037 0.78348 1.18664 1.21441 1.18711 1.21013 1.03111 1.03144 0.91673 1.21854 0.76591 0.79742 0.91208 1.90712 1.56391 1.68817 1.17745 0.88969 0.92439 0.86634 0.86718 0.92038 0.88959 0.69352 0.81997 0.82808 0.86401 0.73275 0.87177 0.86989 0.99605 0.99823 0.92867 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 8.98 71.98 0.65 0.09 16 2 C 0.13 1.01 1.37 2.99 0.00 1.01 16 3 C -0.14 -0.41 8.98 71.98 0.65 0.24 16 4 N -0.69 -5.91 5.90 -439.82 -2.60 -8.50 16 5 C 0.70 13.27 8.54 179.44 1.53 14.80 16 6 O -0.56 -13.97 14.65 -3.81 -0.06 -14.03 16 7 N -0.53 -11.24 2.84 -594.34 -1.69 -12.93 16 8 C 0.14 3.76 6.56 38.06 0.25 4.01 16 9 C -0.16 -4.20 9.25 22.40 0.21 -3.99 16 10 C -0.08 -2.13 10.03 22.23 0.22 -1.90 16 11 C -0.15 -4.78 8.65 22.41 0.19 -4.58 16 12 C 0.16 5.07 6.25 38.13 0.24 5.31 16 13 N -0.66 -20.05 5.34 -303.55 -1.62 -21.67 16 14 C 0.51 20.24 7.55 87.66 0.66 20.90 16 15 O -0.56 -27.36 13.77 -3.05 -0.04 -27.40 16 16 C -0.12 -4.61 5.64 29.85 0.17 -4.44 16 17 C 0.04 2.31 4.26 29.85 0.13 2.44 16 18 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 19 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 20 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 21 N -0.94 -59.62 13.29 21.45 0.28 -59.33 16 22 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 C -0.17 -4.67 9.24 22.51 0.21 -4.46 16 27 C 0.52 9.09 6.86 87.89 0.60 9.69 16 28 O -0.47 -10.17 15.09 -2.88 -0.04 -10.22 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.46 1.01 8.96 -92.71 -0.83 0.18 16 36 H 0.16 4.34 5.17 -2.91 -0.02 4.33 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.12 4.41 6.52 -2.91 -0.02 4.39 16 39 H 0.43 9.50 8.82 -92.71 -0.82 8.69 16 40 H 0.11 3.79 8.14 -2.38 -0.02 3.77 16 41 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 42 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 43 H -0.02 -1.05 8.10 -2.38 -0.02 -1.07 16 44 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.16 4.18 5.37 -2.91 -0.02 4.16 16 Total: -1.00 -84.45 378.76 2.08 -82.37 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.59 Total: 16.76 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.41 Total: 8.56 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -5.62 Total: -102.44 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.14 Total: -51.65 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -84.45 2.08 -82.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360445717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.497 kcal (2) G-P(sol) polarization free energy of solvation -84.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds