Wall clock time and date at job start Wed Apr 1 2020 04:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47195 * 2 1 4 4 C 1.53005 * 110.53362 * 66.37924 * 3 2 1 5 5 N 1.47308 * 110.60117 * 303.54857 * 3 2 1 6 6 C 1.34525 * 106.61991 * 241.47015 * 5 3 2 7 7 O 1.21535 * 123.77509 * 179.97438 * 6 5 3 8 8 N 1.33797 * 112.45928 * 359.97438 * 6 5 3 9 9 C 1.46494 * 124.18193 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47027 * 89.97322 * 9 8 6 11 11 O 1.21287 * 120.00037 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99923 * 179.97438 * 10 9 8 13 13 C 1.39938 * 119.99919 * 174.89717 * 12 10 9 14 14 C 1.39294 * 119.94398 * 325.55632 * 13 12 10 15 15 C 1.38493 * 120.42414 * 179.76549 * 14 13 12 16 16 C 1.37678 * 120.32056 * 0.50956 * 15 14 13 17 17 C 1.40737 * 119.89071 * 359.74873 * 16 15 14 18 18 C 1.41400 * 120.21444 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00223 * 25.15213 * 18 17 16 20 20 C 1.39932 * 120.00053 * 205.15778 * 18 17 16 21 21 N 1.30832 * 120.00076 * 16.79640 * 20 18 17 22 22 Si 1.86803 * 120.00150 * 196.79424 * 20 18 17 23 23 H 1.48500 * 109.46749 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47209 * 119.99873 * 22 20 18 25 25 H 1.48502 * 109.46999 * 240.00145 * 22 20 18 26 26 C 1.38236 * 119.94789 * 145.83141 * 13 12 10 27 27 C 1.34770 * 111.64082 * 359.97438 * 8 6 5 28 28 O 1.21232 * 127.15817 * 180.02562 * 27 8 6 29 29 H 1.08999 * 109.47242 * 59.99708 * 1 2 3 30 30 H 1.09001 * 109.47158 * 299.99821 * 1 2 3 31 31 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47242 * 120.00292 * 2 1 3 33 33 H 1.09001 * 109.47158 * 240.00179 * 2 1 3 34 34 H 1.08999 * 109.47616 * 59.99998 * 4 3 2 35 35 H 1.09001 * 109.47304 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46859 * 299.99568 * 4 3 2 37 37 H 0.96999 * 126.69265 * 61.44133 * 5 3 2 38 38 H 1.08999 * 109.47363 * 209.97560 * 9 8 6 39 39 H 1.09001 * 109.47294 * 329.97772 * 9 8 6 40 40 H 0.96992 * 119.99861 * 354.89985 * 12 10 9 41 41 H 1.07998 * 119.78769 * 0.02562 * 14 13 12 42 42 H 1.07999 * 119.83792 * 180.23915 * 15 14 13 43 43 H 1.08010 * 120.05586 * 179.76671 * 16 15 14 44 44 H 0.96997 * 120.00213 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.15915 * 359.95539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6776 2.1398 1.3128 5 7 1.4943 2.1851 -1.1492 6 6 2.5466 2.5679 -1.8947 7 8 2.4487 3.2055 -2.9247 8 7 3.7132 2.1683 -1.3755 9 6 5.0199 2.4457 -1.9770 10 6 5.5520 3.7504 -1.4426 11 8 4.9038 4.3857 -0.6380 12 7 6.7488 4.2107 -1.8578 13 6 7.1952 5.4711 -1.4451 14 6 6.2816 6.5063 -1.2609 15 6 6.7118 7.7563 -0.8479 16 6 8.0498 7.9921 -0.6249 17 6 8.9851 6.9573 -0.8121 18 6 10.3610 7.1921 -0.5855 19 1 10.6710 7.9755 0.0902 20 6 11.3209 6.4095 -1.2369 21 7 10.9852 5.6983 -2.2823 22 14 13.0816 6.3804 -0.6137 23 1 13.2012 7.2648 0.5733 24 1 13.4504 4.9923 -0.2365 25 1 13.9931 6.8617 -1.6828 26 6 8.5427 5.6884 -1.2263 27 6 3.5378 1.4799 -0.2303 28 8 4.3987 0.9916 0.4698 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.1318 1.6041 2.1463 35 1 2.0489 3.1645 1.2945 36 1 0.5942 2.1477 1.4330 37 1 0.5586 2.3631 -1.3328 38 1 5.7125 1.6416 -1.7283 39 1 4.9146 2.5126 -3.0598 40 1 7.3006 3.6684 -2.4428 41 1 5.2304 6.3320 -1.4372 42 1 5.9948 8.5511 -0.7043 43 1 8.3811 8.9696 -0.3065 44 1 11.6504 5.1555 -2.7336 45 1 9.2522 4.8874 -1.3724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411067168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:17 Heat of formation + Delta-G solvation = -55.905030 kcal Electronic energy + Delta-G solvation = -30159.502048 eV Core-core repulsion = 25949.709428 eV Total energy + Delta-G solvation = -4209.792620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.79051 -39.66990 -38.76444 -37.43710 -36.97178 -35.50126 -34.29463 -33.32916 -32.83993 -29.93892 -29.75485 -29.40148 -27.69080 -25.68176 -25.24145 -23.64951 -22.38291 -21.26081 -20.95292 -20.51024 -19.64354 -18.16859 -17.64452 -17.42584 -16.65919 -16.39656 -15.90720 -15.83182 -15.47798 -15.30597 -14.91012 -14.74839 -14.51570 -14.43406 -14.29335 -13.70817 -13.35343 -13.18476 -13.00375 -12.79882 -12.67004 -12.45287 -12.42769 -12.23559 -11.83902 -11.62681 -11.43167 -11.28474 -11.12484 -10.96914 -10.75111 -10.69315 -10.38424 -10.27749 -10.00011 -9.74919 -9.73459 -9.44681 -9.19218 -8.94254 -7.38658 -7.03871 -6.70629 -4.37371 1.47022 1.90473 2.48391 2.81227 2.82702 2.87984 3.07422 3.12939 3.16881 3.29688 3.58625 3.70463 3.93431 4.07517 4.29682 4.62202 4.73334 4.75132 4.80565 4.89031 5.02636 5.06165 5.14835 5.27497 5.33960 5.42698 5.47048 5.51241 5.66296 5.67173 5.81425 6.26633 6.55238 6.63072 6.65859 6.84837 6.85992 7.03175 7.05476 7.19076 7.24501 7.58859 7.64871 7.91628 7.95644 8.02275 8.11132 8.30070 8.50996 8.68868 8.88388 8.94578 10.18534 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002455 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.426316 B =11401.150097 C =11818.590980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.124 3.876 4 C -0.149 4.149 5 N -0.719 5.719 6 C 0.710 3.290 7 O -0.538 6.538 8 N -0.559 5.559 9 C 0.098 3.902 10 C 0.494 3.506 11 O -0.516 6.516 12 N -0.658 5.658 13 C 0.145 3.855 14 C -0.225 4.225 15 C -0.086 4.086 16 C -0.226 4.226 17 C 0.119 3.881 18 C -0.462 4.462 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.799 5.799 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.275 1.275 26 C -0.179 4.179 27 C 0.535 3.465 28 O -0.459 6.459 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.438 0.562 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.404 0.596 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.278 0.722 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.806 -14.501 1.515 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.034 3.966 4 C -0.207 4.207 5 N -0.384 5.384 6 C 0.410 3.590 7 O -0.411 6.411 8 N -0.304 5.304 9 C -0.027 4.027 10 C 0.278 3.722 11 O -0.391 6.391 12 N -0.302 5.302 13 C 0.053 3.947 14 C -0.246 4.246 15 C -0.105 4.105 16 C -0.246 4.246 17 C 0.116 3.884 18 C -0.492 4.492 19 H 0.097 0.903 20 C -0.141 4.141 21 N -0.425 5.425 22 Si 0.732 3.268 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.201 4.201 27 C 0.321 3.679 28 O -0.328 6.328 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.283 0.717 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.239 0.761 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.664 -14.134 1.690 21.916 hybrid contribution 0.810 -0.158 -0.288 0.874 sum -15.853 -14.292 1.402 21.390 Atomic orbital electron populations 1.21781 0.94057 1.02736 1.02380 1.21731 0.97517 0.92060 1.04200 1.21478 0.90403 0.95152 0.89611 1.22038 1.03207 1.01778 0.93726 1.45597 1.08560 1.59021 1.25186 1.15755 0.80767 0.79124 0.83311 1.91027 1.84869 1.41836 1.23396 1.45815 1.07741 1.51646 1.25221 1.21503 0.82834 0.97742 1.00633 1.20614 0.82192 0.87119 0.82258 1.90722 1.57642 1.58364 1.32358 1.43344 1.18838 1.18560 1.49463 1.17575 0.93597 0.82530 1.00975 1.20286 0.97640 0.93050 1.13613 1.20415 0.95204 0.95312 0.99556 1.21045 0.92973 0.98198 1.12417 1.17372 0.92963 0.89767 0.88272 1.19562 0.90349 1.15613 1.23667 0.90307 1.25880 1.01396 0.93571 0.93219 1.69818 1.36318 1.22289 1.14090 0.86280 0.81573 0.79047 0.79927 1.18428 1.19771 1.20046 1.21073 0.91652 0.98738 1.08611 1.20762 0.91097 0.76448 0.79546 1.90805 1.49348 1.44589 1.48020 0.92376 0.91763 0.91637 0.89146 0.90853 0.89784 0.90744 0.90135 0.71716 0.85758 0.85441 0.76108 0.88228 0.89035 0.88812 0.91077 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.50 37.16 0.35 -0.26 16 2 C -0.12 -0.71 5.27 -26.74 -0.14 -0.85 16 3 C 0.12 1.10 1.01 -132.10 -0.13 0.97 16 4 C -0.15 -1.18 8.76 37.16 0.33 -0.86 16 5 N -0.72 -6.67 5.41 -52.94 -0.29 -6.95 16 6 C 0.71 9.66 8.62 -88.02 -0.76 8.90 16 7 O -0.54 -9.13 17.48 5.33 0.09 -9.04 16 8 N -0.56 -7.59 2.09 -122.02 -0.26 -7.85 16 9 C 0.10 1.30 6.18 -5.20 -0.03 1.27 16 10 C 0.49 9.08 7.63 -10.98 -0.08 9.00 16 11 O -0.52 -11.46 14.18 5.55 0.08 -11.38 16 12 N -0.66 -12.53 5.33 -9.91 -0.05 -12.58 16 13 C 0.14 3.45 6.25 -83.76 -0.52 2.92 16 14 C -0.22 -5.52 8.66 -39.09 -0.34 -5.86 16 15 C -0.09 -2.07 10.02 -39.69 -0.40 -2.46 16 16 C -0.23 -5.72 9.79 -38.84 -0.38 -6.10 16 17 C 0.12 3.21 5.57 -106.85 -0.60 2.61 16 18 C -0.46 -12.24 9.05 -37.75 -0.34 -12.58 16 19 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 20 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 21 N -0.80 -20.08 10.94 55.55 0.61 -19.47 16 22 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.18 -4.61 8.60 -38.68 -0.33 -4.94 16 27 C 0.54 6.86 6.99 -10.55 -0.07 6.79 16 28 O -0.46 -6.96 17.76 5.60 0.10 -6.86 16 29 H 0.06 0.22 7.04 -51.93 -0.37 -0.14 16 30 H 0.06 0.22 6.70 -51.93 -0.35 -0.13 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.42 6.72 -51.93 -0.35 0.07 16 37 H 0.44 2.91 8.12 -40.82 -0.33 2.58 16 38 H 0.12 1.32 8.00 -51.93 -0.42 0.90 16 39 H 0.13 1.43 7.86 -51.93 -0.41 1.02 16 40 H 0.40 6.28 8.82 -40.82 -0.36 5.92 16 41 H 0.10 2.46 6.48 -52.49 -0.34 2.12 16 42 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 44 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 45 H 0.12 3.18 6.17 -52.49 -0.32 2.85 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -34.75 380.07 -8.31 -43.06 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.75 Total: 11.45 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -3.54 Total: 0.35 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.01 Total: -46.85 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: 0.27 Total: -27.28 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.75 -8.31 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411067168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.843 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds