Wall clock time and date at job start Wed Apr 1 2020 04:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47195 * 2 1 4 4 C 1.53005 * 110.53362 * 66.37924 * 3 2 1 5 5 N 1.47308 * 110.60117 * 303.54857 * 3 2 1 6 6 C 1.34525 * 106.61991 * 241.47015 * 5 3 2 7 7 O 1.21535 * 123.77509 * 179.97438 * 6 5 3 8 8 N 1.33797 * 112.45928 * 359.97438 * 6 5 3 9 9 C 1.46494 * 124.18193 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47027 * 89.97322 * 9 8 6 11 11 O 1.21287 * 120.00037 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99923 * 179.97438 * 10 9 8 13 13 C 1.39938 * 119.99919 * 174.89717 * 12 10 9 14 14 C 1.39294 * 119.94398 * 325.55632 * 13 12 10 15 15 C 1.38493 * 120.42414 * 179.76549 * 14 13 12 16 16 C 1.37678 * 120.32056 * 0.50956 * 15 14 13 17 17 C 1.40737 * 119.89071 * 359.74873 * 16 15 14 18 18 C 1.41400 * 120.21444 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00223 * 25.15213 * 18 17 16 20 20 C 1.39932 * 120.00053 * 205.15778 * 18 17 16 21 21 N 1.30832 * 120.00076 * 16.79640 * 20 18 17 22 22 Si 1.86803 * 120.00150 * 196.79424 * 20 18 17 23 23 H 1.48500 * 109.46749 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47209 * 119.99873 * 22 20 18 25 25 H 1.48502 * 109.46999 * 240.00145 * 22 20 18 26 26 C 1.38236 * 119.94789 * 145.83141 * 13 12 10 27 27 C 1.34770 * 111.64082 * 359.97438 * 8 6 5 28 28 O 1.21232 * 127.15817 * 180.02562 * 27 8 6 29 29 H 1.08999 * 109.47242 * 59.99708 * 1 2 3 30 30 H 1.09001 * 109.47158 * 299.99821 * 1 2 3 31 31 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47242 * 120.00292 * 2 1 3 33 33 H 1.09001 * 109.47158 * 240.00179 * 2 1 3 34 34 H 1.08999 * 109.47616 * 59.99998 * 4 3 2 35 35 H 1.09001 * 109.47304 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46859 * 299.99568 * 4 3 2 37 37 H 0.96999 * 126.69265 * 61.44133 * 5 3 2 38 38 H 1.08999 * 109.47363 * 209.97560 * 9 8 6 39 39 H 1.09001 * 109.47294 * 329.97772 * 9 8 6 40 40 H 0.96992 * 119.99861 * 354.89985 * 12 10 9 41 41 H 1.07998 * 119.78769 * 0.02562 * 14 13 12 42 42 H 1.07999 * 119.83792 * 180.23915 * 15 14 13 43 43 H 1.08010 * 120.05586 * 179.76671 * 16 15 14 44 44 H 0.96997 * 120.00213 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.15915 * 359.95539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6776 2.1398 1.3128 5 7 1.4943 2.1851 -1.1492 6 6 2.5466 2.5679 -1.8947 7 8 2.4487 3.2055 -2.9247 8 7 3.7132 2.1683 -1.3755 9 6 5.0199 2.4457 -1.9770 10 6 5.5520 3.7504 -1.4426 11 8 4.9038 4.3857 -0.6380 12 7 6.7488 4.2107 -1.8578 13 6 7.1952 5.4711 -1.4451 14 6 6.2816 6.5063 -1.2609 15 6 6.7118 7.7563 -0.8479 16 6 8.0498 7.9921 -0.6249 17 6 8.9851 6.9573 -0.8121 18 6 10.3610 7.1921 -0.5855 19 1 10.6710 7.9755 0.0902 20 6 11.3209 6.4095 -1.2369 21 7 10.9852 5.6983 -2.2823 22 14 13.0816 6.3804 -0.6137 23 1 13.2012 7.2648 0.5733 24 1 13.4504 4.9923 -0.2365 25 1 13.9931 6.8617 -1.6828 26 6 8.5427 5.6884 -1.2263 27 6 3.5378 1.4799 -0.2303 28 8 4.3987 0.9916 0.4698 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.1318 1.6041 2.1463 35 1 2.0489 3.1645 1.2945 36 1 0.5942 2.1477 1.4330 37 1 0.5586 2.3631 -1.3328 38 1 5.7125 1.6416 -1.7283 39 1 4.9146 2.5126 -3.0598 40 1 7.3006 3.6684 -2.4428 41 1 5.2304 6.3320 -1.4372 42 1 5.9948 8.5511 -0.7043 43 1 8.3811 8.9696 -0.3065 44 1 11.6504 5.1555 -2.7336 45 1 9.2522 4.8874 -1.3724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411067168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:16 Heat of formation + Delta-G solvation = -79.538144 kcal Electronic energy + Delta-G solvation = -30160.526857 eV Core-core repulsion = 25949.709428 eV Total energy + Delta-G solvation = -4210.817429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.77068 -41.24924 -39.84531 -39.10898 -38.02597 -36.61226 -36.02368 -35.16307 -33.59281 -31.56253 -31.05938 -30.50771 -29.15585 -27.20465 -26.40367 -24.51778 -23.74985 -23.11925 -22.03328 -21.61047 -21.20917 -19.34731 -19.17510 -18.86671 -17.89940 -17.55756 -17.26026 -16.93535 -16.73588 -16.60770 -16.36917 -16.23175 -15.94838 -15.38263 -15.32894 -15.00902 -14.85886 -14.55303 -14.23553 -14.04623 -13.67706 -13.64735 -13.37511 -13.17656 -13.11698 -13.03449 -12.82853 -12.62603 -12.38520 -12.34889 -12.02227 -11.92484 -11.84983 -11.63551 -11.60242 -11.24550 -11.19094 -10.95899 -10.67641 -10.49853 -9.36979 -8.91114 -8.58048 -6.37406 0.46721 0.72670 0.91618 1.00200 1.40211 1.45444 1.54588 1.63170 1.73503 2.03779 2.21925 2.25197 2.72791 2.78301 3.41203 3.52184 3.65358 3.69090 3.80256 4.03748 4.18510 4.31115 4.34275 4.41534 4.45111 4.56459 4.66489 4.72523 4.80571 4.81665 5.01590 5.05914 5.10083 5.11533 5.16307 5.19492 5.33094 5.43474 5.72599 5.73008 5.79684 5.86904 5.98507 6.05592 6.20780 6.28690 6.48429 6.67189 6.91431 6.93120 6.99157 7.12669 8.33001 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002455 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.426316 B =11401.150097 C =11818.590980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C 0.131 3.869 4 C -0.147 4.147 5 N -0.696 5.696 6 C 0.704 3.296 7 O -0.577 6.577 8 N -0.566 5.566 9 C 0.103 3.897 10 C 0.490 3.510 11 O -0.557 6.557 12 N -0.653 5.653 13 C 0.151 3.849 14 C -0.241 4.241 15 C -0.085 4.085 16 C -0.247 4.247 17 C 0.091 3.909 18 C -0.495 4.495 19 H 0.076 0.924 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.263 1.263 25 H -0.265 1.265 26 C -0.199 4.199 27 C 0.526 3.474 28 O -0.487 6.487 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.114 0.886 37 H 0.452 0.548 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.421 0.579 41 H 0.096 0.904 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.290 0.710 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.538 -16.281 1.753 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.041 3.959 4 C -0.205 4.205 5 N -0.362 5.362 6 C 0.404 3.596 7 O -0.454 6.454 8 N -0.311 5.311 9 C -0.022 4.022 10 C 0.277 3.723 11 O -0.435 6.435 12 N -0.299 5.299 13 C 0.058 3.942 14 C -0.262 4.262 15 C -0.103 4.103 16 C -0.267 4.267 17 C 0.088 3.912 18 C -0.525 4.525 19 H 0.094 0.906 20 C -0.178 4.178 21 N -0.445 5.445 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.189 1.189 26 C -0.221 4.221 27 C 0.314 3.686 28 O -0.358 6.358 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.300 0.700 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.448 -15.956 1.922 23.721 hybrid contribution 0.982 0.379 -0.365 1.114 sum -16.465 -15.577 1.557 22.720 Atomic orbital electron populations 1.21801 0.92073 1.03742 1.03105 1.21767 0.99062 0.89507 1.04572 1.21652 0.87598 0.97115 0.89543 1.22081 1.05402 0.99869 0.93169 1.45543 1.08470 1.57834 1.24341 1.15954 0.81483 0.78916 0.83204 1.90998 1.85438 1.43735 1.25187 1.45986 1.07812 1.51607 1.25676 1.21611 0.83495 0.95374 1.01685 1.21533 0.81160 0.88331 0.81236 1.90695 1.58541 1.60026 1.34201 1.43308 1.19605 1.17334 1.49641 1.17629 0.92955 0.84246 0.99383 1.20409 0.97522 0.93696 1.14565 1.20710 0.95345 0.95944 0.98343 1.21212 0.93427 0.98493 1.13519 1.17792 0.93846 0.90705 0.88822 1.19805 0.90993 1.16910 1.24771 0.90558 1.26712 1.05492 0.92651 0.92903 1.69842 1.38207 1.22099 1.14401 0.85162 0.75953 0.79313 0.79302 1.18517 1.18786 1.18948 1.21031 0.92312 0.98418 1.10340 1.21491 0.92787 0.75523 0.78781 1.90783 1.50627 1.45744 1.48612 0.92038 0.90654 0.90562 0.88398 0.90992 0.89196 0.93588 0.86728 0.70038 0.82773 0.83065 0.74154 0.88631 0.86445 0.87931 0.89949 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.50 71.98 0.68 -0.02 16 2 C -0.11 -1.06 5.27 30.59 0.16 -0.90 16 3 C 0.13 2.09 1.01 2.98 0.00 2.10 16 4 C -0.15 -2.08 8.76 71.98 0.63 -1.45 16 5 N -0.70 -11.86 5.41 -439.83 -2.38 -14.24 16 6 C 0.70 18.69 8.62 179.44 1.55 20.24 16 7 O -0.58 -19.48 17.48 -3.83 -0.07 -19.54 16 8 N -0.57 -15.00 2.09 -777.22 -1.63 -16.63 16 9 C 0.10 2.65 6.18 85.63 0.53 3.18 16 10 C 0.49 18.11 7.63 87.66 0.67 18.78 16 11 O -0.56 -25.24 14.18 -3.05 -0.04 -25.29 16 12 N -0.65 -25.06 5.33 -303.64 -1.62 -26.68 16 13 C 0.15 7.34 6.25 38.10 0.24 7.58 16 14 C -0.24 -12.06 8.66 22.58 0.20 -11.87 16 15 C -0.08 -4.14 10.02 22.20 0.22 -3.91 16 16 C -0.25 -12.78 9.79 22.75 0.22 -12.56 16 17 C 0.09 5.06 5.57 -21.31 -0.12 4.94 16 18 C -0.50 -26.84 9.05 23.46 0.21 -26.63 16 19 H 0.08 4.02 7.90 -2.91 -0.02 3.99 16 20 C 0.04 1.87 5.16 85.25 0.44 2.31 16 21 N -0.82 -41.29 10.94 21.82 0.24 -41.05 16 22 Si 0.98 37.72 29.59 68.60 2.03 39.75 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 C -0.20 -10.53 8.60 22.85 0.20 -10.33 16 27 C 0.53 13.07 6.99 87.94 0.61 13.69 16 28 O -0.49 -14.53 17.76 -2.88 -0.05 -14.58 16 29 H 0.06 0.26 7.04 -2.39 -0.02 0.25 16 30 H 0.07 0.21 6.70 -2.39 -0.02 0.20 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 0.82 6.72 -2.39 -0.02 0.81 16 37 H 0.45 5.05 8.12 -92.71 -0.75 4.30 16 38 H 0.15 3.02 8.00 -2.39 -0.02 3.00 16 39 H 0.15 3.18 7.86 -2.39 -0.02 3.16 16 40 H 0.42 12.99 8.82 -92.71 -0.82 12.17 16 41 H 0.10 4.83 6.48 -2.91 -0.02 4.81 16 42 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 43 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 44 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 45 H 0.12 6.20 6.17 -2.91 -0.02 6.18 16 Total: -1.00 -77.89 380.07 2.42 -75.48 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -0.51 Total: 37.63 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.45 Total: 5.16 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -5.39 Total: -98.60 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -0.16 Total: -59.41 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -77.89 2.42 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411067168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.062 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds