Wall clock time and date at job start Wed Apr 1 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99827 * 2 1 4 4 N 1.46496 * 109.46703 * 180.02562 * 3 2 1 5 5 N 1.40089 * 126.04068 * 90.02797 * 4 3 2 6 6 C 1.30829 * 108.20957 * 179.97438 * 5 4 3 7 7 C 1.50699 * 125.90280 * 180.02562 * 6 5 4 8 8 C 1.39878 * 108.20071 * 0.02562 * 6 5 4 9 9 S 1.76199 * 126.03684 * 179.97438 * 8 6 5 10 10 O 1.42099 * 106.40435 * 336.48317 * 9 8 6 11 11 O 1.42100 * 106.40277 * 203.56363 * 9 8 6 12 12 N 1.65601 * 107.21644 * 90.02259 * 9 8 6 13 13 C 1.46500 * 119.99929 * 65.00049 * 12 9 8 14 14 C 1.53000 * 109.47285 * 164.99876 * 13 12 9 15 15 C 1.53004 * 109.47181 * 299.99864 * 14 13 12 16 16 C 1.52998 * 109.47152 * 59.99651 * 14 13 12 17 17 C 1.50700 * 109.47295 * 179.97438 * 14 13 12 18 18 H 1.07995 * 119.99918 * 1.35706 * 17 14 13 19 19 C 1.37872 * 119.99893 * 181.35546 * 17 14 13 20 20 N 1.31523 * 120.00185 * 193.96466 * 19 17 14 21 21 Si 1.86801 * 120.00471 * 13.96515 * 19 17 14 22 22 H 1.48497 * 109.46959 * 84.55200 * 21 19 17 23 23 H 1.48500 * 109.47516 * 204.55305 * 21 19 17 24 24 H 1.48503 * 109.46720 * 324.55616 * 21 19 17 25 25 C 1.34950 * 126.03810 * 270.30597 * 4 3 2 26 26 C 1.50699 * 126.12818 * 0.02562 * 25 4 3 27 27 H 1.09002 * 109.46640 * 299.99719 * 1 2 3 28 28 H 1.08998 * 109.47287 * 59.99523 * 1 2 3 29 29 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47100 * 60.00653 * 3 2 1 31 31 H 1.08997 * 109.47360 * 300.00365 * 3 2 1 32 32 H 1.09001 * 109.47055 * 269.97920 * 7 6 5 33 33 H 1.09008 * 109.46905 * 29.97613 * 7 6 5 34 34 H 1.08992 * 109.47460 * 149.97401 * 7 6 5 35 35 H 0.97000 * 120.00183 * 244.99394 * 12 9 8 36 36 H 1.08998 * 109.47057 * 284.99573 * 13 12 9 37 37 H 1.09003 * 109.47055 * 44.99806 * 13 12 9 38 38 H 1.09003 * 109.47088 * 69.32822 * 15 14 13 39 39 H 1.08996 * 109.47254 * 189.33581 * 15 14 13 40 40 H 1.09003 * 109.47185 * 309.33505 * 15 14 13 41 41 H 1.08998 * 109.47102 * 60.00356 * 16 14 13 42 42 H 1.08996 * 109.47122 * 180.02562 * 16 14 13 43 43 H 1.08998 * 109.47112 * 300.00155 * 16 14 13 44 44 H 0.96999 * 120.00291 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47318 * 270.17529 * 26 25 4 46 46 H 1.09005 * 109.47013 * 30.17309 * 26 25 4 47 47 H 1.09001 * 109.47496 * 150.17261 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4706 1.1897 -0.0006 5 7 4.2919 1.1254 -1.1337 6 6 5.5336 1.0273 -0.7336 7 6 6.7446 0.9326 -1.6256 8 6 5.5431 1.0254 0.6651 9 16 6.9705 0.9115 1.6919 10 8 7.9788 0.2867 0.9095 11 8 6.5266 0.3990 2.9407 12 7 7.4921 2.4568 1.9793 13 6 6.6523 3.3833 2.7426 14 6 7.4901 4.5847 3.1849 15 6 8.6473 4.1040 4.0628 16 6 8.0477 5.2991 1.9522 17 6 6.6261 5.5380 3.9695 18 1 5.5892 5.2994 4.1548 19 6 7.1593 6.7148 4.4509 20 7 6.5061 7.4115 5.3552 21 14 8.8097 7.3200 3.8187 22 1 8.6085 8.0812 2.5596 23 1 9.4362 8.2021 4.8357 24 1 9.6962 6.1575 3.5579 25 6 4.2621 1.1210 1.0903 26 6 3.8019 1.1490 2.5250 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 6.9561 -0.1147 -1.8411 33 1 6.5516 1.4637 -2.5578 34 1 7.6019 1.3805 -1.1231 35 1 8.3536 2.7484 1.6423 36 1 5.8279 3.7257 2.1172 37 1 6.2551 2.8742 3.6208 38 1 9.3606 3.5500 3.4524 39 1 9.1442 4.9639 4.5119 40 1 8.2616 3.4555 4.8494 41 1 7.2233 5.6416 1.3268 42 1 8.6449 6.1548 2.2674 43 1 8.6725 4.6098 1.3844 44 1 6.8811 8.2396 5.6936 45 1 3.7688 2.1805 2.8759 46 1 2.8072 0.7089 2.5962 47 1 4.4968 0.5779 3.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416531240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:28 Heat of formation + Delta-G solvation = -27.127168 kcal Electronic energy + Delta-G solvation = -30024.794250 eV Core-core repulsion = 25951.693483 eV Total energy + Delta-G solvation = -4073.100767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56633 -38.33907 -37.36201 -36.91075 -35.55698 -33.92048 -33.19717 -32.20877 -31.28540 -29.45883 -27.45902 -26.99661 -26.35486 -25.68238 -25.03381 -24.59916 -21.44519 -19.95322 -19.24257 -19.12399 -17.72959 -17.41570 -17.11511 -16.53050 -16.07619 -15.83782 -15.54236 -15.19110 -15.02504 -14.45860 -14.25446 -13.84954 -13.79413 -13.43714 -13.38303 -12.95672 -12.88568 -12.74809 -12.67884 -12.57847 -12.35296 -12.20296 -11.99485 -11.91513 -11.84540 -11.68901 -11.64659 -11.53778 -11.19969 -10.54678 -10.45070 -10.36815 -10.20195 -10.16329 -10.02621 -9.46357 -9.23534 -9.12472 -8.99222 -8.65802 -8.46549 -6.17155 -4.14304 0.77679 1.31930 2.00062 2.20691 3.24899 3.33160 3.39369 3.43780 3.51161 4.04081 4.07382 4.25797 4.35370 4.46036 4.52826 4.72925 4.80912 4.84284 4.94250 5.15079 5.17792 5.22528 5.42506 5.55850 5.58432 5.62323 5.77162 5.87440 5.95609 6.00981 6.07366 6.08124 6.33460 6.38837 6.40843 6.50324 6.59645 6.68710 6.70834 6.74867 6.93409 7.20201 7.38729 7.39600 7.47374 7.73217 8.41244 8.85724 9.47825 10.95671 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.003713 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.447775 B = 7540.274624 C = 8533.070905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.405 6.405 3 C 0.302 3.698 4 N -0.364 5.364 5 N -0.292 5.292 6 C 0.168 3.832 7 C -0.087 4.087 8 C -0.815 4.815 9 S 2.724 3.276 10 O -0.969 6.969 11 O -0.964 6.964 12 N -1.113 6.113 13 C 0.140 3.860 14 C 0.036 3.964 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.514 4.514 18 H 0.076 0.924 19 C 0.076 3.924 20 N -0.892 5.892 21 Si 0.883 3.117 22 H -0.287 1.287 23 H -0.306 1.306 24 H -0.247 1.247 25 C 0.232 3.768 26 C -0.144 4.144 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.033 0.967 44 H 0.264 0.736 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 -12.238 -10.833 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.323 6.323 3 C 0.142 3.858 4 N -0.145 5.145 5 N -0.111 5.111 6 C -0.003 4.003 7 C -0.145 4.145 8 C -0.912 4.912 9 S 2.811 3.189 10 O -0.959 6.959 11 O -0.954 6.954 12 N -0.875 5.875 13 C 0.015 3.985 14 C 0.033 3.967 15 C -0.201 4.201 16 C -0.206 4.206 17 C -0.552 4.552 18 H 0.094 0.906 19 C -0.127 4.127 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.215 1.215 23 H -0.235 1.235 24 H -0.173 1.173 25 C 0.100 3.900 26 C -0.202 4.202 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.524 -12.993 -11.374 19.257 hybrid contribution 0.707 1.277 -0.308 1.492 sum -7.816 -11.716 -11.681 18.298 Atomic orbital electron populations 1.22765 0.78465 1.03811 1.00695 1.87888 1.21225 1.27645 1.95543 1.22350 0.74504 0.85607 1.03320 1.48837 1.05825 1.55998 1.03886 1.77364 1.01167 1.25884 1.06662 1.21895 0.94024 0.93182 0.91162 1.20482 0.91774 1.04297 0.97967 1.31357 1.16035 1.35245 1.08584 1.00790 0.72554 0.72460 0.73128 1.93532 1.56618 1.74123 1.71647 1.93490 1.82535 1.77917 1.41439 1.55541 1.30370 1.32202 1.69415 1.21427 0.92520 0.90662 0.93879 1.18622 0.93501 0.92048 0.92519 1.22281 0.97928 1.00336 0.99530 1.22359 0.99867 0.99361 0.99011 1.20725 0.98047 1.02947 1.33485 0.90636 1.24959 0.97121 0.96759 0.93818 1.69948 1.39810 1.16017 1.27090 0.87322 0.85491 0.78350 0.77231 1.21457 1.23465 1.17250 1.21081 0.89049 0.88457 0.91437 1.21347 1.04619 1.06188 0.88028 0.93158 0.93315 0.88712 0.88914 0.89049 0.89155 0.90276 0.89095 0.74948 0.92788 0.90670 0.95517 0.92725 0.93202 0.92903 0.94054 0.94839 0.92587 0.87830 0.89907 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 11.01 101.05 1.11 1.35 16 2 O -0.40 -4.27 10.93 -35.23 -0.39 -4.65 16 3 C 0.30 3.02 6.87 59.84 0.41 3.43 16 4 N -0.36 -5.07 3.88 -61.90 -0.24 -5.31 16 5 N -0.29 -4.52 12.58 33.67 0.42 -4.09 16 6 C 0.17 2.52 7.21 -82.41 -0.59 1.92 16 7 C -0.09 -1.05 9.53 36.00 0.34 -0.71 16 8 C -0.82 -12.38 6.14 -40.01 -0.25 -12.62 16 9 S 2.72 42.44 5.71 -107.50 -0.61 41.82 16 10 O -0.97 -16.11 15.90 -57.17 -0.91 -17.02 16 11 O -0.96 -16.63 14.71 -57.17 -0.84 -17.47 16 12 N -1.11 -17.27 5.43 -10.61 -0.06 -17.33 16 13 C 0.14 2.49 5.04 -4.04 -0.02 2.47 16 14 C 0.04 0.74 0.51 -155.66 -0.08 0.66 16 15 C -0.14 -2.93 7.54 37.16 0.28 -2.65 16 16 C -0.15 -2.94 7.52 37.16 0.28 -2.66 16 17 C -0.51 -13.12 8.62 -34.44 -0.30 -13.41 16 18 H 0.08 2.06 7.99 -52.49 -0.42 1.64 16 19 C 0.08 2.05 5.32 -17.82 -0.09 1.96 16 20 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 21 Si 0.88 20.79 22.79 -169.99 -3.87 16.92 16 22 H -0.29 -6.73 7.10 56.52 0.40 -6.33 16 23 H -0.31 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.25 -5.33 4.65 56.52 0.26 -5.06 16 25 C 0.23 3.30 6.92 -82.26 -0.57 2.73 16 26 C -0.14 -1.70 9.57 36.01 0.34 -1.36 16 27 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.67 7.68 -51.93 -0.40 0.27 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.09 1.07 6.88 -51.93 -0.36 0.71 16 35 H 0.41 5.92 6.53 -34.47 -0.23 5.69 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.34 7.75 -51.93 -0.40 0.94 16 38 H 0.03 0.47 7.47 -51.93 -0.39 0.08 16 39 H 0.05 1.18 4.30 -51.93 -0.22 0.96 16 40 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 43 H 0.03 0.55 6.60 -51.93 -0.34 0.20 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.08 0.77 7.74 -51.93 -0.40 0.37 16 47 H 0.13 1.70 5.54 -51.93 -0.29 1.42 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -34.29 377.00 -6.24 -40.52 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.06 Total: 4.92 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 0.87 Total: -18.88 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.90 Total: -51.84 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -2.14 Total: -39.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -3.87 Total: 16.92 kcal Atomic # 16 Polarization: 42.44 SS G_CDS: -0.61 Total: 41.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.29 -6.24 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416531240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.396 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds