Wall clock time and date at job start Wed Apr 1 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99827 * 2 1 4 4 N 1.46496 * 109.46703 * 180.02562 * 3 2 1 5 5 N 1.40089 * 126.04068 * 90.02797 * 4 3 2 6 6 C 1.30829 * 108.20957 * 179.97438 * 5 4 3 7 7 C 1.50699 * 125.90280 * 180.02562 * 6 5 4 8 8 C 1.39878 * 108.20071 * 0.02562 * 6 5 4 9 9 S 1.76199 * 126.03684 * 179.97438 * 8 6 5 10 10 O 1.42099 * 106.40435 * 336.48317 * 9 8 6 11 11 O 1.42100 * 106.40277 * 203.56363 * 9 8 6 12 12 N 1.65601 * 107.21644 * 90.02259 * 9 8 6 13 13 C 1.46500 * 119.99929 * 65.00049 * 12 9 8 14 14 C 1.53000 * 109.47285 * 164.99876 * 13 12 9 15 15 C 1.53004 * 109.47181 * 299.99864 * 14 13 12 16 16 C 1.52998 * 109.47152 * 59.99651 * 14 13 12 17 17 C 1.50700 * 109.47295 * 179.97438 * 14 13 12 18 18 H 1.07995 * 119.99918 * 1.35706 * 17 14 13 19 19 C 1.37872 * 119.99893 * 181.35546 * 17 14 13 20 20 N 1.31523 * 120.00185 * 193.96466 * 19 17 14 21 21 Si 1.86801 * 120.00471 * 13.96515 * 19 17 14 22 22 H 1.48497 * 109.46959 * 84.55200 * 21 19 17 23 23 H 1.48500 * 109.47516 * 204.55305 * 21 19 17 24 24 H 1.48503 * 109.46720 * 324.55616 * 21 19 17 25 25 C 1.34950 * 126.03810 * 270.30597 * 4 3 2 26 26 C 1.50699 * 126.12818 * 0.02562 * 25 4 3 27 27 H 1.09002 * 109.46640 * 299.99719 * 1 2 3 28 28 H 1.08998 * 109.47287 * 59.99523 * 1 2 3 29 29 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47100 * 60.00653 * 3 2 1 31 31 H 1.08997 * 109.47360 * 300.00365 * 3 2 1 32 32 H 1.09001 * 109.47055 * 269.97920 * 7 6 5 33 33 H 1.09008 * 109.46905 * 29.97613 * 7 6 5 34 34 H 1.08992 * 109.47460 * 149.97401 * 7 6 5 35 35 H 0.97000 * 120.00183 * 244.99394 * 12 9 8 36 36 H 1.08998 * 109.47057 * 284.99573 * 13 12 9 37 37 H 1.09003 * 109.47055 * 44.99806 * 13 12 9 38 38 H 1.09003 * 109.47088 * 69.32822 * 15 14 13 39 39 H 1.08996 * 109.47254 * 189.33581 * 15 14 13 40 40 H 1.09003 * 109.47185 * 309.33505 * 15 14 13 41 41 H 1.08998 * 109.47102 * 60.00356 * 16 14 13 42 42 H 1.08996 * 109.47122 * 180.02562 * 16 14 13 43 43 H 1.08998 * 109.47112 * 300.00155 * 16 14 13 44 44 H 0.96999 * 120.00291 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47318 * 270.17529 * 26 25 4 46 46 H 1.09005 * 109.47013 * 30.17309 * 26 25 4 47 47 H 1.09001 * 109.47496 * 150.17261 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4706 1.1897 -0.0006 5 7 4.2919 1.1254 -1.1337 6 6 5.5336 1.0273 -0.7336 7 6 6.7446 0.9326 -1.6256 8 6 5.5431 1.0254 0.6651 9 16 6.9705 0.9115 1.6919 10 8 7.9788 0.2867 0.9095 11 8 6.5266 0.3990 2.9407 12 7 7.4921 2.4568 1.9793 13 6 6.6523 3.3833 2.7426 14 6 7.4901 4.5847 3.1849 15 6 8.6473 4.1040 4.0628 16 6 8.0477 5.2991 1.9522 17 6 6.6261 5.5380 3.9695 18 1 5.5892 5.2994 4.1548 19 6 7.1593 6.7148 4.4509 20 7 6.5061 7.4115 5.3552 21 14 8.8097 7.3200 3.8187 22 1 8.6085 8.0812 2.5596 23 1 9.4362 8.2021 4.8357 24 1 9.6962 6.1575 3.5579 25 6 4.2621 1.1210 1.0903 26 6 3.8019 1.1490 2.5250 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 6.9561 -0.1147 -1.8411 33 1 6.5516 1.4637 -2.5578 34 1 7.6019 1.3805 -1.1231 35 1 8.3536 2.7484 1.6423 36 1 5.8279 3.7257 2.1172 37 1 6.2551 2.8742 3.6208 38 1 9.3606 3.5500 3.4524 39 1 9.1442 4.9639 4.5119 40 1 8.2616 3.4555 4.8494 41 1 7.2233 5.6416 1.3268 42 1 8.6449 6.1548 2.2674 43 1 8.6725 4.6098 1.3844 44 1 6.8811 8.2396 5.6936 45 1 3.7688 2.1805 2.8759 46 1 2.8072 0.7089 2.5962 47 1 4.4968 0.5779 3.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416531240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:27 Heat of formation + Delta-G solvation = -55.081823 kcal Electronic energy + Delta-G solvation = -30026.006454 eV Core-core repulsion = 25951.693483 eV Total energy + Delta-G solvation = -4074.312972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.59322 -39.03281 -38.90809 -38.22196 -36.84442 -34.88970 -34.86580 -33.23610 -33.05251 -30.30943 -28.42260 -27.93422 -27.64227 -27.27430 -26.44444 -25.84581 -22.50062 -21.02739 -20.85818 -20.36143 -18.91572 -18.43453 -18.03175 -17.89194 -17.41965 -16.96760 -16.82126 -16.61967 -16.08195 -15.60773 -15.32588 -15.25778 -14.79031 -14.73249 -14.46812 -14.30127 -14.25034 -14.07879 -13.69294 -13.68732 -13.52286 -13.42681 -13.22866 -13.17806 -13.07893 -12.99306 -12.80258 -12.52132 -12.32133 -12.30580 -11.91612 -11.89360 -11.70883 -11.62010 -10.98472 -10.97087 -10.54495 -10.49172 -10.42008 -10.32992 -10.18082 -8.24223 -6.23143 -0.44515 0.29579 1.09928 1.12508 1.39609 1.43337 1.53152 2.26043 2.39991 2.75945 2.85079 3.11473 3.13142 3.31021 3.53090 3.78076 3.82203 4.05316 4.10671 4.17506 4.38515 4.43499 4.46917 4.50412 4.51474 4.61244 4.62137 4.72664 4.78790 4.85788 4.90653 4.94129 4.95672 5.03339 5.05090 5.11833 5.16724 5.34216 5.40436 5.56046 5.58203 5.79755 5.87704 5.96721 6.20234 6.33551 6.40007 6.81777 7.42041 8.91871 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.003713 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.447775 B = 7540.274624 C = 8533.070905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.432 6.432 3 C 0.292 3.708 4 N -0.367 5.367 5 N -0.315 5.315 6 C 0.159 3.841 7 C -0.092 4.092 8 C -0.833 4.833 9 S 2.742 3.258 10 O -0.978 6.978 11 O -0.983 6.983 12 N -1.107 6.107 13 C 0.150 3.850 14 C 0.029 3.971 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.507 4.507 18 H 0.044 0.956 19 C 0.021 3.979 20 N -0.944 5.944 21 Si 0.933 3.067 22 H -0.285 1.285 23 H -0.321 1.321 24 H -0.210 1.210 25 C 0.227 3.773 26 C -0.144 4.144 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.422 0.578 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.262 0.738 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -13.189 -12.383 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.352 6.352 3 C 0.133 3.867 4 N -0.148 5.148 5 N -0.135 5.135 6 C -0.012 4.012 7 C -0.150 4.150 8 C -0.931 4.931 9 S 2.830 3.170 10 O -0.968 6.968 11 O -0.973 6.973 12 N -0.869 5.869 13 C 0.024 3.976 14 C 0.027 3.973 15 C -0.204 4.204 16 C -0.209 4.209 17 C -0.545 4.545 18 H 0.062 0.938 19 C -0.177 4.177 20 N -0.584 5.584 21 Si 0.764 3.236 22 H -0.212 1.212 23 H -0.251 1.251 24 H -0.134 1.134 25 C 0.093 3.907 26 C -0.202 4.202 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.260 0.740 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.053 -13.976 -12.951 20.686 hybrid contribution 0.380 1.485 0.167 1.542 sum -7.673 -12.491 -12.784 19.451 Atomic orbital electron populations 1.23007 0.76305 1.04819 1.02158 1.87844 1.23568 1.27908 1.95836 1.22775 0.72697 0.85933 1.05283 1.49146 1.07157 1.55201 1.03290 1.77295 1.01628 1.26667 1.07887 1.22327 0.94640 0.92749 0.91440 1.20635 0.90874 1.05098 0.98375 1.31276 1.16199 1.36887 1.08769 1.00110 0.72299 0.72012 0.72576 1.93516 1.57292 1.74243 1.71761 1.93471 1.82844 1.78301 1.42647 1.55359 1.30599 1.31732 1.69242 1.21157 0.92386 0.89863 0.94205 1.18619 0.93496 0.92325 0.92852 1.22270 0.98221 1.00108 0.99834 1.22330 1.00392 0.99572 0.98559 1.21076 0.97357 1.03416 1.32699 0.93786 1.25711 1.00655 0.97242 0.94080 1.70091 1.42050 1.16816 1.29406 0.86521 0.82359 0.78648 0.76093 1.21218 1.25072 1.13428 1.21424 0.89091 0.87750 0.92400 1.21414 1.05636 1.06683 0.86480 0.91395 0.92135 0.88001 0.86176 0.87905 0.88439 0.88609 0.88763 0.74031 0.92149 0.91106 0.92243 0.94067 0.93596 0.92851 0.95205 0.91046 0.92945 0.87032 0.87427 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.43 -8.41 10.93 -148.98 -1.63 -10.03 16 3 C 0.29 5.29 6.87 127.77 0.88 6.17 16 4 N -0.37 -9.68 3.88 -450.23 -1.75 -11.43 16 5 N -0.32 -9.39 12.58 -47.38 -0.60 -9.98 16 6 C 0.16 4.54 7.21 43.10 0.31 4.85 16 7 C -0.09 -2.06 9.53 71.24 0.68 -1.38 16 8 C -0.83 -24.18 6.14 21.99 0.14 -24.05 16 9 S 2.74 80.95 5.71 -56.49 -0.32 80.63 16 10 O -0.98 -30.66 15.90 -128.00 -2.04 -32.69 16 11 O -0.98 -32.83 14.71 -128.00 -1.88 -34.71 16 12 N -1.11 -31.60 5.43 -187.49 -1.02 -32.61 16 13 C 0.15 5.06 5.04 86.38 0.44 5.49 16 14 C 0.03 1.18 0.51 -52.93 -0.03 1.15 16 15 C -0.15 -5.62 7.54 71.98 0.54 -5.08 16 16 C -0.15 -5.48 7.52 71.98 0.54 -4.94 16 17 C -0.51 -25.94 8.62 25.60 0.22 -25.72 16 18 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 19 C 0.02 1.12 5.32 84.65 0.45 1.57 16 20 N -0.94 -56.38 13.96 21.45 0.30 -56.08 16 21 Si 0.93 42.29 22.79 68.60 1.56 43.85 16 22 H -0.28 -12.68 7.10 99.48 0.71 -11.97 16 23 H -0.32 -15.21 7.11 99.48 0.71 -14.50 16 24 H -0.21 -8.27 4.65 99.48 0.46 -7.81 16 25 C 0.23 6.14 6.92 41.40 0.29 6.43 16 26 C -0.14 -3.21 9.57 71.24 0.68 -2.53 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.12 1.44 7.68 -2.39 -0.02 1.42 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.09 2.02 6.88 -2.39 -0.02 2.00 16 35 H 0.42 10.56 6.53 -96.74 -0.63 9.93 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.46 7.75 -2.39 -0.02 2.44 16 38 H 0.06 1.87 7.47 -2.39 -0.02 1.85 16 39 H 0.04 1.67 4.30 -2.39 -0.01 1.66 16 40 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.03 1.15 2.25 -2.39 -0.01 1.15 16 43 H 0.07 2.03 6.60 -2.39 -0.02 2.01 16 44 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.11 1.79 7.74 -2.38 -0.02 1.78 16 47 H 0.12 2.98 5.54 -2.39 -0.01 2.97 16 Total: -1.00 -74.36 377.00 -0.86 -75.23 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.12 Total: 24.29 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 6.38 Total: -36.46 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -3.06 Total: -110.10 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -5.55 Total: -77.44 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.56 Total: 43.85 kcal Atomic # 16 Polarization: 80.95 SS G_CDS: -0.32 Total: 80.63 kcal Total: -74.36 -0.86 -75.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416531240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.144 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds