Wall clock time and date at job start Wed Apr 1 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38297 * 119.96757 * 2 1 4 4 C 1.38261 * 120.13189 * 179.70152 * 3 2 1 5 5 C 1.38141 * 120.06535 * 0.25361 * 4 3 2 6 6 C 1.38801 * 119.93331 * 0.02562 * 5 4 3 7 7 N 1.40205 * 120.06339 * 179.97438 * 6 5 4 8 8 C 1.33798 * 124.17756 * 173.59688 * 7 6 5 9 9 O 1.21534 * 123.76795 * 0.03127 * 8 7 6 10 10 N 1.34524 * 112.45756 * 179.86487 * 8 7 6 11 11 C 1.47309 * 106.61859 * 0.37870 * 10 8 7 12 12 H 1.09004 * 110.60357 * 118.31118 * 11 10 8 13 13 C 1.53002 * 110.73141 * 241.19009 * 11 10 8 14 14 C 1.53003 * 109.47290 * 289.25142 * 13 11 10 15 15 C 1.50695 * 109.47156 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00309 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99905 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00077 * 180.02562 * 17 15 14 19 19 C 1.50695 * 109.47236 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99666 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00448 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99947 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.46977 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47312 * 120.00142 * 23 21 19 26 26 H 1.48505 * 109.47086 * 240.00049 * 23 21 19 27 27 C 1.34768 * 124.17853 * 353.89331 * 7 6 5 28 28 O 1.21236 * 127.15827 * 359.92441 * 27 7 6 29 29 C 1.38104 * 119.97036 * 180.25395 * 2 1 3 30 30 H 1.09001 * 109.46793 * 90.00045 * 1 2 3 31 31 H 1.08996 * 109.47188 * 209.99620 * 1 2 3 32 32 H 1.08998 * 109.46963 * 329.99628 * 1 2 3 33 33 H 1.08002 * 119.93574 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.96256 * 180.27926 * 4 3 2 35 35 H 1.07998 * 120.03419 * 180.02562 * 5 4 3 36 36 H 0.97000 * 126.69236 * 180.12637 * 10 8 7 37 37 H 1.08999 * 109.46979 * 49.24559 * 13 11 10 38 38 H 1.08997 * 109.47380 * 169.24940 * 13 11 10 39 39 H 1.08994 * 109.46870 * 300.00048 * 14 13 11 40 40 H 1.08997 * 109.47075 * 59.99610 * 14 13 11 41 41 H 0.96999 * 119.99849 * 359.97438 * 17 15 14 42 42 H 1.09003 * 109.46590 * 299.99529 * 18 17 15 43 43 H 1.08997 * 109.47388 * 59.99536 * 18 17 15 44 44 H 0.96994 * 120.00270 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.03063 * 0.02884 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1981 0.0000 4 6 3.5803 1.2021 0.0062 5 6 4.2758 0.0085 0.0072 6 6 3.5853 -1.1955 0.0013 7 7 4.2884 -2.4085 0.0017 8 6 3.7132 -3.6107 0.1199 9 8 2.5153 -3.7776 0.2392 10 7 4.6086 -4.6142 0.0882 11 6 5.9349 -3.9908 -0.0610 12 1 6.5665 -4.2230 0.7966 13 6 6.6043 -4.4460 -1.3593 14 6 7.0151 -5.9145 -1.2336 15 6 7.6739 -6.3630 -2.5126 16 8 7.8018 -5.5850 -3.4341 17 7 8.1201 -7.6292 -2.6328 18 6 8.7610 -8.0651 -3.8760 19 6 9.1655 -9.5115 -3.7522 20 1 8.9655 -10.0518 -2.8388 21 6 9.7908 -10.1449 -4.8051 22 7 10.0348 -9.4868 -5.9173 23 14 10.2929 -11.9376 -4.6515 24 1 9.9094 -12.4458 -3.3100 25 1 9.6049 -12.7358 -5.6978 26 1 11.7630 -12.0566 -4.8248 27 6 5.6277 -2.5073 -0.1111 28 8 6.4217 -1.5986 -0.2289 29 6 2.1968 -1.1964 -0.0053 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6562 2.1325 -0.0004 34 1 4.1170 2.1392 0.0108 35 1 5.3558 0.0122 0.0125 36 1 4.4183 -5.5630 0.1548 37 1 5.9045 -4.3342 -2.1875 38 1 7.4883 -3.8361 -1.5456 39 1 7.7148 -6.0264 -0.4055 40 1 6.1312 -6.5244 -1.0474 41 1 8.0174 -8.2516 -1.8960 42 1 8.0613 -7.9527 -4.7042 43 1 9.6452 -7.4555 -4.0620 44 1 10.4750 -9.9323 -6.6579 45 1 1.6568 -2.1317 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427613684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:55 Heat of formation + Delta-G solvation = -57.090175 kcal Electronic energy + Delta-G solvation = -28870.833135 eV Core-core repulsion = 24660.989123 eV Total energy + Delta-G solvation = -4209.844012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.19446 -39.56208 -39.17347 -38.94419 -36.81839 -35.73665 -34.30774 -33.00163 -32.65812 -32.33387 -30.34770 -28.55948 -27.32206 -26.91925 -24.27638 -24.20320 -22.76909 -22.05565 -21.49325 -20.55712 -19.69684 -18.50605 -17.56953 -17.32157 -17.17692 -16.68351 -16.34371 -16.00563 -15.68041 -15.51892 -15.22353 -15.13350 -14.68636 -14.49794 -14.24798 -14.15682 -14.01742 -13.62031 -13.36837 -13.12586 -12.73553 -12.64994 -12.51579 -12.34823 -12.06671 -11.95424 -11.82331 -11.66188 -11.19358 -11.15297 -11.00352 -10.94616 -10.75831 -10.37523 -10.24349 -9.94534 -9.44429 -9.18834 -9.05450 -8.80331 -8.63708 -7.97793 -6.22168 -4.29619 0.80709 1.06232 1.23543 1.68711 2.60197 2.64594 3.19545 3.23577 3.26790 3.29470 3.44572 3.50939 3.87330 4.22970 4.29698 4.50749 4.54906 4.57769 4.66259 4.79604 4.93657 4.94702 5.00352 5.03288 5.14252 5.19552 5.30605 5.31405 5.34942 5.52947 5.62806 5.74095 5.80785 5.84631 5.96532 6.00127 6.12476 6.24856 6.39561 6.64248 6.68706 6.95324 7.23077 7.33430 7.44525 7.59207 7.67560 7.90800 8.52570 8.70486 8.99574 9.37328 10.88012 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.001767 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.298930 B =15840.151615 C =16178.913814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.130 4.130 4 C -0.098 4.098 5 C -0.144 4.144 6 C 0.138 3.862 7 N -0.521 5.521 8 C 0.705 3.295 9 O -0.532 6.532 10 N -0.715 5.715 11 C 0.095 3.905 12 H 0.137 0.863 13 C -0.103 4.103 14 C -0.140 4.140 15 C 0.496 3.504 16 O -0.555 6.555 17 N -0.711 5.711 18 C 0.248 3.752 19 C -0.545 4.545 20 H 0.064 0.936 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.526 3.474 28 O -0.446 6.446 29 C -0.136 4.136 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.445 0.555 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.391 0.609 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.266 0.734 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 17.084 17.371 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.116 4.116 5 C -0.164 4.164 6 C 0.047 3.953 7 N -0.259 5.259 8 C 0.406 3.594 9 O -0.405 6.405 10 N -0.380 5.380 11 C -0.013 4.013 12 H 0.155 0.845 13 C -0.142 4.142 14 C -0.180 4.180 15 C 0.281 3.719 16 O -0.434 6.434 17 N -0.359 5.359 18 C 0.127 3.873 19 C -0.583 4.583 20 H 0.082 0.918 21 C -0.141 4.141 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.314 3.686 28 O -0.314 6.314 29 C -0.155 4.155 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.291 0.709 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.223 0.777 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.165 18.038 16.490 28.762 hybrid contribution 0.332 -1.786 0.326 1.846 sum -14.832 16.252 16.816 27.693 Atomic orbital electron populations 1.20793 0.90621 1.02977 1.02624 1.19828 0.96382 0.92327 0.98598 1.21149 0.94313 0.97701 1.01654 1.21000 0.94060 0.97491 0.99059 1.21465 1.02112 0.90406 1.02413 1.17748 0.91464 0.82837 1.03257 1.43754 1.09490 1.06996 1.65647 1.15769 0.85469 0.80411 0.77759 1.90889 1.11781 1.83479 1.54389 1.45600 1.05934 1.09009 1.77482 1.22277 0.86843 0.88837 1.03365 0.84538 1.21570 1.02355 0.96697 0.93602 1.21642 1.01917 0.96158 0.98324 1.20320 0.79744 0.83059 0.88818 1.90690 1.57902 1.53456 1.41401 1.46479 1.58901 1.10774 1.19782 1.19127 0.92879 0.94632 0.80620 1.21252 1.40434 0.95593 1.01028 0.91823 1.24962 0.95353 0.98786 0.94949 1.69981 1.41110 1.36814 1.04283 0.86353 0.78339 0.83962 0.78201 1.19642 1.20784 1.20763 1.20972 0.81083 0.91914 0.74632 1.90744 1.51861 1.44791 1.44038 1.21633 0.91882 1.00604 1.01427 0.90901 0.91198 0.91373 0.85741 0.85184 0.83139 0.70927 0.89591 0.87996 0.88607 0.89305 0.77651 0.95514 0.95470 0.92440 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.07 -0.66 5.88 -104.65 -0.62 -1.27 16 3 C -0.13 -1.08 9.70 -39.55 -0.38 -1.46 16 4 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 5 C -0.14 -1.56 9.32 -39.41 -0.37 -1.93 16 6 C 0.14 1.61 6.56 -83.59 -0.55 1.06 16 7 N -0.52 -5.81 2.83 -64.35 -0.18 -5.99 16 8 C 0.70 7.67 8.54 -88.02 -0.75 6.91 16 9 O -0.53 -7.00 14.66 5.34 0.08 -6.92 16 10 N -0.72 -5.43 6.07 -59.19 -0.36 -5.78 16 11 C 0.10 0.74 3.64 -68.20 -0.25 0.49 16 12 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 13 C -0.10 -1.06 4.25 -26.73 -0.11 -1.17 16 14 C -0.14 -1.44 5.64 -27.88 -0.16 -1.59 16 15 C 0.50 8.72 7.83 -10.98 -0.09 8.63 16 16 O -0.56 -12.37 15.98 5.56 0.09 -12.28 16 17 N -0.71 -13.70 5.55 -61.48 -0.34 -14.04 16 18 C 0.25 6.33 5.43 -5.20 -0.03 6.30 16 19 C -0.54 -14.32 9.28 -34.45 -0.32 -14.64 16 20 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.88 -25.63 13.29 55.43 0.74 -24.89 16 23 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 C 0.53 5.56 7.52 -10.55 -0.08 5.48 16 28 O -0.45 -5.56 15.06 5.59 0.08 -5.47 16 29 C -0.14 -1.53 8.91 -39.41 -0.35 -1.88 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 1.70 5.37 -52.49 -0.28 1.41 16 36 H 0.44 2.38 8.62 -40.82 -0.35 2.03 16 37 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 41 H 0.39 6.25 8.32 -40.82 -0.34 5.91 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.16 1.95 5.19 -52.48 -0.27 1.68 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -34.92 382.58 -9.15 -44.07 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.82 Total: 5.30 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -4.18 Total: 4.89 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.15 Total: -50.71 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.25 Total: -24.67 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.92 -9.15 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427613684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.022 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds