Wall clock time and date at job start Wed Apr 1 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38241 * 119.89178 * 2 1 4 4 C 1.37990 * 120.22879 * 180.27639 * 3 2 1 5 5 C 1.39630 * 120.00875 * 359.72358 * 4 3 2 6 6 C 1.47858 * 120.11139 * 179.97438 * 5 4 3 7 7 N 1.34780 * 120.00147 * 0.02562 * 6 5 4 8 8 O 1.21553 * 120.00469 * 180.02562 * 6 5 4 9 9 C 1.39445 * 119.77952 * 359.97438 * 5 4 3 10 10 C 1.38693 * 119.77637 * 359.97438 * 9 5 4 11 11 N 1.39747 * 120.00718 * 179.97438 * 10 9 5 12 12 C 1.34782 * 120.00450 * 331.20621 * 11 10 9 13 13 O 1.21375 * 119.99470 * 4.44217 * 12 11 10 14 14 C 1.49347 * 120.00425 * 184.44164 * 12 11 10 15 15 O 1.21361 * 120.00067 * 5.13451 * 14 12 11 16 16 N 1.34775 * 120.00161 * 185.12904 * 14 12 11 17 17 C 1.46502 * 120.00011 * 185.08194 * 16 14 12 18 18 C 1.53001 * 109.46990 * 184.68798 * 17 16 14 19 19 C 1.50699 * 115.55136 * 303.62668 * 18 17 16 20 20 H 1.07998 * 120.00240 * 95.23902 * 19 18 17 21 21 C 1.37879 * 119.99658 * 274.96787 * 19 18 17 22 22 N 1.31514 * 120.00398 * 355.55909 * 21 19 18 23 23 Si 1.86802 * 119.99710 * 175.56372 * 21 19 18 24 24 H 1.48504 * 109.47365 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47330 * 119.99936 * 23 21 19 26 26 H 1.48497 * 109.47014 * 239.99903 * 23 21 19 27 27 C 1.53002 * 117.49912 * 89.29472 * 18 17 16 28 28 C 1.53000 * 117.50061 * 157.95529 * 18 17 16 29 29 H 1.08999 * 109.47345 * 270.27821 * 1 2 3 30 30 H 1.09004 * 109.47513 * 30.27737 * 1 2 3 31 31 H 1.09001 * 109.47460 * 150.27816 * 1 2 3 32 32 H 1.08000 * 119.88890 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99974 * 179.69934 * 4 3 2 34 34 H 0.97008 * 119.99524 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00203 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.10902 * 180.02562 * 9 5 4 37 37 H 0.97002 * 120.00342 * 151.20371 * 11 10 9 38 38 H 0.97002 * 120.00310 * 5.07878 * 16 14 12 39 39 H 1.08994 * 109.47492 * 64.68747 * 17 16 14 40 40 H 1.08998 * 109.47153 * 304.68318 * 17 16 14 41 41 H 0.96992 * 120.00130 * 185.00312 * 22 21 19 42 42 H 1.08993 * 117.50033 * 214.99851 * 27 18 17 43 43 H 1.09001 * 117.49720 * 0.02562 * 27 18 17 44 44 H 1.09007 * 117.49753 * 359.97438 * 28 18 17 45 45 H 1.09000 * 117.49988 * 144.97223 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1985 0.0000 4 6 3.5757 1.2066 -0.0058 5 6 4.2811 0.0016 -0.0058 6 6 5.7597 0.0077 -0.0125 7 7 6.4288 1.1777 -0.0181 8 8 6.3719 -1.0424 -0.0130 9 6 3.5866 -1.2075 0.0006 10 6 2.1997 -1.2051 0.0074 11 7 1.4987 -2.4141 0.0133 12 6 2.0428 -3.5113 -0.5494 13 8 3.1733 -3.4706 -0.9893 14 6 1.2547 -4.7773 -0.6318 15 8 0.0940 -4.7936 -0.2777 16 7 1.8324 -5.9016 -1.0994 17 6 1.0314 -7.1140 -1.2851 18 6 1.9427 -8.2672 -1.7101 19 6 2.7637 -8.0238 -2.9501 20 1 3.7786 -7.6647 -2.8639 21 6 2.2210 -8.2647 -4.1945 22 7 1.0193 -8.7891 -4.2975 23 14 3.1927 -7.8465 -5.7341 24 1 4.5067 -7.2716 -5.3492 25 1 3.4064 -9.0789 -6.5346 26 1 2.4372 -6.8560 -6.5424 27 6 2.5701 -9.1167 -0.6030 28 6 1.4417 -9.6916 -1.4629 29 1 -0.3634 0.0050 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3634 -0.8925 -0.5095 32 1 1.6523 2.1317 -0.0004 33 1 4.1102 2.1451 -0.0106 34 1 5.9403 2.0157 -0.0181 35 1 7.3988 1.1816 -0.0221 36 1 4.1269 -2.1427 0.0010 37 1 0.6206 -2.4637 0.4223 38 1 2.7786 -5.9080 -1.3130 39 1 0.2819 -6.9397 -2.0571 40 1 0.5357 -7.3690 -0.3484 41 1 0.6666 -9.0258 -5.1695 42 1 3.5765 -9.4996 -0.7716 43 1 2.3332 -8.8544 0.4281 44 1 0.4629 -9.8071 -0.9971 45 1 1.7055 -10.4525 -2.1975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430353206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:33 Heat of formation + Delta-G solvation = -53.869435 kcal Electronic energy + Delta-G solvation = -29451.909537 eV Core-core repulsion = 25242.205187 eV Total energy + Delta-G solvation = -4209.704350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19075 -39.99454 -38.91799 -37.98638 -36.76304 -35.27098 -33.98127 -33.39866 -32.77989 -31.99319 -30.20344 -27.82224 -27.05412 -25.51212 -24.31727 -23.20619 -22.35723 -21.16513 -20.63942 -20.00956 -19.55727 -18.71478 -17.96728 -17.37962 -16.60831 -16.23543 -16.00150 -15.84285 -15.50337 -15.04277 -14.97148 -14.77493 -14.55863 -14.24957 -14.17001 -13.94052 -13.84151 -13.57232 -13.19016 -12.77352 -12.72532 -12.31969 -12.02461 -11.97693 -11.92116 -11.64994 -11.17605 -10.99781 -10.96578 -10.71378 -10.50734 -10.25769 -10.25185 -9.96660 -9.64216 -9.31846 -9.09122 -9.04831 -8.59707 -8.44570 -8.39185 -8.16750 -6.10592 -4.20557 0.50415 0.99115 1.67912 2.42931 2.63626 3.21594 3.26107 3.35556 3.40638 3.41548 3.63666 3.86289 4.35552 4.38786 4.45561 4.68982 4.71806 4.78757 4.96714 5.13463 5.17310 5.27084 5.31461 5.32215 5.59781 5.70609 5.87297 5.93389 6.00582 6.07940 6.12553 6.24817 6.38324 6.43684 6.50015 6.64122 6.68128 6.73366 6.89396 7.04147 7.05289 7.07099 7.28274 7.47854 7.67222 7.80232 8.01832 8.02998 8.28972 8.42695 8.82589 9.48023 10.96359 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.002762 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.439791 B =10135.800759 C =11069.022039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.084 4.084 3 C -0.109 4.109 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.563 3.437 7 N -0.853 5.853 8 O -0.529 6.529 9 C -0.066 4.066 10 C 0.141 3.859 11 N -0.648 5.648 12 C 0.506 3.494 13 O -0.487 6.487 14 C 0.499 3.501 15 O -0.539 6.539 16 N -0.658 5.658 17 C 0.159 3.841 18 C 0.020 3.980 19 C -0.502 4.502 20 H 0.063 0.937 21 C 0.075 3.925 22 N -0.875 5.875 23 Si 0.889 3.111 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.210 4.210 28 C -0.139 4.139 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.399 0.601 35 H 0.404 0.596 36 H 0.165 0.835 37 H 0.424 0.576 38 H 0.417 0.583 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.261 0.739 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 22.508 10.391 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.121 4.121 5 C -0.132 4.132 6 C 0.349 3.651 7 N -0.418 5.418 8 O -0.405 6.405 9 C -0.087 4.087 10 C 0.046 3.954 11 N -0.295 5.295 12 C 0.288 3.712 13 O -0.359 6.359 14 C 0.277 3.723 15 O -0.418 6.418 16 N -0.308 5.308 17 C 0.036 3.964 18 C 0.019 3.981 19 C -0.539 4.539 20 H 0.081 0.919 21 C -0.129 4.129 22 N -0.511 5.511 23 Si 0.717 3.283 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.247 4.247 28 C -0.178 4.178 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.229 0.771 35 H 0.236 0.764 36 H 0.183 0.817 37 H 0.262 0.738 38 H 0.254 0.746 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.019 21.604 10.116 23.877 hybrid contribution 0.569 0.648 -0.947 1.281 sum 1.588 22.252 9.168 24.119 Atomic orbital electron populations 1.20858 0.90311 1.03861 1.02973 1.19918 0.96598 0.91566 1.00606 1.20740 0.93650 0.97109 1.01292 1.21201 0.94458 0.96709 0.99727 1.19715 0.92731 0.93967 1.06773 1.18257 0.87530 0.83774 0.75580 1.43731 1.11087 1.08348 1.78646 1.90873 1.69608 1.31375 1.48633 1.21701 0.92243 0.99754 0.94962 1.17524 0.91067 0.84838 1.01986 1.43178 1.22332 1.07279 1.56661 1.20806 0.87039 0.85318 0.78011 1.90780 1.17445 1.83746 1.43973 1.19613 0.87184 0.84589 0.80884 1.90726 1.16713 1.85141 1.49266 1.45898 1.15004 1.09821 1.60085 1.21206 0.93441 0.82761 0.98961 1.19027 0.97094 0.88018 0.93948 1.20424 0.98684 1.46184 0.88650 0.91853 1.24982 0.94649 0.94359 0.98959 1.69992 1.15958 1.40866 1.24261 0.86574 0.80419 0.78213 0.83125 1.19450 1.20973 1.20933 1.23066 0.98005 1.08934 0.94701 1.22470 0.95163 0.99151 1.00972 0.90399 0.90557 0.90952 0.84864 0.85579 0.77126 0.76450 0.81745 0.73767 0.74604 0.90743 0.93222 0.92893 0.90190 0.91606 0.91725 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.44 36.00 0.34 -0.53 16 2 C -0.08 -0.79 5.90 -104.34 -0.62 -1.40 16 3 C -0.11 -0.83 9.67 -39.67 -0.38 -1.21 16 4 C -0.10 -0.80 9.54 -39.15 -0.37 -1.17 16 5 C -0.13 -1.49 5.87 -104.99 -0.62 -2.10 16 6 C 0.56 6.89 8.05 -12.32 -0.10 6.79 16 7 N -0.85 -5.94 8.82 30.53 0.27 -5.67 16 8 O -0.53 -9.06 17.18 5.32 0.09 -8.97 16 9 C -0.07 -0.93 8.30 -38.96 -0.32 -1.26 16 10 C 0.14 1.75 6.38 -83.80 -0.53 1.22 16 11 N -0.65 -8.47 4.85 -10.33 -0.05 -8.52 16 12 C 0.51 8.35 7.76 -11.63 -0.09 8.26 16 13 O -0.49 -9.14 13.56 5.47 0.07 -9.07 16 14 C 0.50 9.18 7.88 -11.63 -0.09 9.09 16 15 O -0.54 -10.47 16.48 5.49 0.09 -10.38 16 16 N -0.66 -13.14 5.40 -60.77 -0.33 -13.47 16 17 C 0.16 3.47 5.57 -4.04 -0.02 3.44 16 18 C 0.02 0.46 1.59 -155.66 -0.25 0.21 16 19 C -0.50 -12.98 8.17 -34.44 -0.28 -13.26 16 20 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 21 C 0.07 1.98 5.43 -17.82 -0.10 1.89 16 22 N -0.87 -23.94 12.65 55.43 0.70 -23.24 16 23 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.21 -4.37 9.93 -26.69 -0.27 -4.64 16 28 C -0.14 -3.13 9.18 -26.69 -0.24 -3.38 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.07 0.58 7.05 -51.93 -0.37 0.21 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.13 0.52 6.40 -52.49 -0.34 0.18 16 34 H 0.40 1.43 6.86 -40.82 -0.28 1.15 16 35 H 0.40 2.33 8.93 -40.82 -0.36 1.97 16 36 H 0.17 2.83 5.33 -52.48 -0.28 2.55 16 37 H 0.42 4.69 7.07 -40.82 -0.29 4.40 16 38 H 0.42 8.40 7.52 -40.82 -0.31 8.09 16 39 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 40 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 41 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 45 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -33.06 386.83 -7.86 -40.92 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -5.57 Total: 14.70 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -3.95 Total: 1.95 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.59 Total: -50.90 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: 0.26 Total: -28.42 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.06 -7.86 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430353206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.951 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds