Wall clock time and date at job start Wed Apr 1 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38241 * 119.89178 * 2 1 4 4 C 1.37990 * 120.22879 * 180.27639 * 3 2 1 5 5 C 1.39630 * 120.00875 * 359.72358 * 4 3 2 6 6 C 1.47858 * 120.11139 * 179.97438 * 5 4 3 7 7 N 1.34780 * 120.00147 * 0.02562 * 6 5 4 8 8 O 1.21553 * 120.00469 * 180.02562 * 6 5 4 9 9 C 1.39445 * 119.77952 * 359.97438 * 5 4 3 10 10 C 1.38693 * 119.77637 * 359.97438 * 9 5 4 11 11 N 1.39747 * 120.00718 * 179.97438 * 10 9 5 12 12 C 1.34782 * 120.00450 * 331.20621 * 11 10 9 13 13 O 1.21375 * 119.99470 * 4.44217 * 12 11 10 14 14 C 1.49347 * 120.00425 * 184.44164 * 12 11 10 15 15 O 1.21361 * 120.00067 * 5.13451 * 14 12 11 16 16 N 1.34775 * 120.00161 * 185.12904 * 14 12 11 17 17 C 1.46502 * 120.00011 * 185.08194 * 16 14 12 18 18 C 1.53001 * 109.46990 * 184.68798 * 17 16 14 19 19 C 1.50699 * 115.55136 * 303.62668 * 18 17 16 20 20 H 1.07998 * 120.00240 * 95.23902 * 19 18 17 21 21 C 1.37879 * 119.99658 * 274.96787 * 19 18 17 22 22 N 1.31514 * 120.00398 * 355.55909 * 21 19 18 23 23 Si 1.86802 * 119.99710 * 175.56372 * 21 19 18 24 24 H 1.48504 * 109.47365 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47330 * 119.99936 * 23 21 19 26 26 H 1.48497 * 109.47014 * 239.99903 * 23 21 19 27 27 C 1.53002 * 117.49912 * 89.29472 * 18 17 16 28 28 C 1.53000 * 117.50061 * 157.95529 * 18 17 16 29 29 H 1.08999 * 109.47345 * 270.27821 * 1 2 3 30 30 H 1.09004 * 109.47513 * 30.27737 * 1 2 3 31 31 H 1.09001 * 109.47460 * 150.27816 * 1 2 3 32 32 H 1.08000 * 119.88890 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99974 * 179.69934 * 4 3 2 34 34 H 0.97008 * 119.99524 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00203 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.10902 * 180.02562 * 9 5 4 37 37 H 0.97002 * 120.00342 * 151.20371 * 11 10 9 38 38 H 0.97002 * 120.00310 * 5.07878 * 16 14 12 39 39 H 1.08994 * 109.47492 * 64.68747 * 17 16 14 40 40 H 1.08998 * 109.47153 * 304.68318 * 17 16 14 41 41 H 0.96992 * 120.00130 * 185.00312 * 22 21 19 42 42 H 1.08993 * 117.50033 * 214.99851 * 27 18 17 43 43 H 1.09001 * 117.49720 * 0.02562 * 27 18 17 44 44 H 1.09007 * 117.49753 * 359.97438 * 28 18 17 45 45 H 1.09000 * 117.49988 * 144.97223 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.1985 0.0000 4 6 3.5757 1.2066 -0.0058 5 6 4.2811 0.0016 -0.0058 6 6 5.7597 0.0077 -0.0125 7 7 6.4288 1.1777 -0.0181 8 8 6.3719 -1.0424 -0.0130 9 6 3.5866 -1.2075 0.0006 10 6 2.1997 -1.2051 0.0074 11 7 1.4987 -2.4141 0.0133 12 6 2.0428 -3.5113 -0.5494 13 8 3.1733 -3.4706 -0.9893 14 6 1.2547 -4.7773 -0.6318 15 8 0.0940 -4.7936 -0.2777 16 7 1.8324 -5.9016 -1.0994 17 6 1.0314 -7.1140 -1.2851 18 6 1.9427 -8.2672 -1.7101 19 6 2.7637 -8.0238 -2.9501 20 1 3.7786 -7.6647 -2.8639 21 6 2.2210 -8.2647 -4.1945 22 7 1.0193 -8.7891 -4.2975 23 14 3.1927 -7.8465 -5.7341 24 1 4.5067 -7.2716 -5.3492 25 1 3.4064 -9.0789 -6.5346 26 1 2.4372 -6.8560 -6.5424 27 6 2.5701 -9.1167 -0.6030 28 6 1.4417 -9.6916 -1.4629 29 1 -0.3634 0.0050 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3634 -0.8925 -0.5095 32 1 1.6523 2.1317 -0.0004 33 1 4.1102 2.1451 -0.0106 34 1 5.9403 2.0157 -0.0181 35 1 7.3988 1.1816 -0.0221 36 1 4.1269 -2.1427 0.0010 37 1 0.6206 -2.4637 0.4223 38 1 2.7786 -5.9080 -1.3130 39 1 0.2819 -6.9397 -2.0571 40 1 0.5357 -7.3690 -0.3484 41 1 0.6666 -9.0258 -5.1695 42 1 3.5765 -9.4996 -0.7716 43 1 2.3332 -8.8544 0.4281 44 1 0.4629 -9.8071 -0.9971 45 1 1.7055 -10.4525 -2.1975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430353206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:32 Heat of formation + Delta-G solvation = -79.387020 kcal Electronic energy + Delta-G solvation = -29453.016063 eV Core-core repulsion = 25242.205187 eV Total energy + Delta-G solvation = -4210.810876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.33052 -41.08066 -40.14454 -39.15556 -38.50930 -36.37838 -35.10181 -34.71657 -34.00185 -33.53425 -31.10408 -28.87265 -28.34379 -27.44680 -25.61603 -24.03511 -23.36106 -22.89775 -21.56630 -21.50552 -21.15388 -19.81374 -19.16542 -18.35969 -18.05947 -17.63450 -17.21841 -17.11283 -16.67979 -16.49012 -16.26901 -16.02058 -15.83521 -15.52400 -15.36535 -15.03937 -14.81930 -14.61748 -14.56021 -14.45190 -13.75020 -13.54822 -13.41859 -13.06758 -12.97764 -12.90175 -12.89289 -12.69726 -12.39532 -12.30095 -12.02443 -11.74336 -11.42993 -11.23492 -10.99929 -10.76827 -10.76673 -10.48947 -10.21117 -9.95710 -9.83313 -9.28895 -8.14005 -6.27348 -0.33414 -0.00464 0.51632 1.17487 1.36230 1.41502 1.50967 1.73624 2.04537 2.38181 2.42043 2.61211 2.79073 3.13275 3.29417 3.53749 3.72314 3.78836 3.98487 4.08714 4.17365 4.23573 4.34321 4.48308 4.61706 4.65298 4.65798 4.79424 4.82249 4.89776 5.01216 5.08400 5.16673 5.22127 5.25436 5.27402 5.29221 5.36193 5.49183 5.66911 5.74706 5.79597 5.86436 5.88666 6.32378 6.34841 6.40703 6.61387 6.79682 6.86436 7.27513 7.42691 8.92645 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.002762 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.439791 B =10135.800759 C =11069.022039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.100 4.100 4 C -0.078 4.078 5 C -0.148 4.148 6 C 0.557 3.443 7 N -0.824 5.824 8 O -0.594 6.594 9 C -0.096 4.096 10 C 0.110 3.890 11 N -0.628 5.628 12 C 0.509 3.491 13 O -0.517 6.517 14 C 0.502 3.498 15 O -0.548 6.548 16 N -0.665 5.665 17 C 0.174 3.826 18 C -0.004 4.004 19 C -0.509 4.509 20 H 0.055 0.945 21 C 0.033 3.967 22 N -0.900 5.900 23 Si 0.941 3.059 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.286 1.286 27 C -0.184 4.184 28 C -0.143 4.143 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.419 0.581 35 H 0.413 0.587 36 H 0.122 0.878 37 H 0.433 0.567 38 H 0.415 0.585 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.261 0.739 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 26.516 11.295 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.118 4.118 4 C -0.097 4.097 5 C -0.152 4.152 6 C 0.343 3.657 7 N -0.389 5.389 8 O -0.475 6.475 9 C -0.117 4.117 10 C 0.017 3.983 11 N -0.275 5.275 12 C 0.291 3.709 13 O -0.392 6.392 14 C 0.282 3.718 15 O -0.427 6.427 16 N -0.315 5.315 17 C 0.051 3.949 18 C -0.005 4.005 19 C -0.546 4.546 20 H 0.073 0.927 21 C -0.169 4.169 22 N -0.537 5.537 23 Si 0.768 3.232 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.212 1.212 27 C -0.221 4.221 28 C -0.181 4.181 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.197 0.803 33 H 0.191 0.809 34 H 0.253 0.747 35 H 0.245 0.755 36 H 0.140 0.860 37 H 0.273 0.727 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.313 25.712 11.046 27.986 hybrid contribution 0.772 -0.410 -1.159 1.452 sum 1.085 25.302 9.887 27.187 Atomic orbital electron populations 1.20969 0.88377 1.04412 1.04350 1.20308 0.98002 0.90830 0.98480 1.21305 0.93594 0.97956 0.98980 1.21697 0.94947 0.96749 0.96274 1.19781 0.92484 0.94638 1.08249 1.18537 0.88071 0.84090 0.74971 1.43480 1.11616 1.07672 1.76115 1.90841 1.70759 1.33876 1.52031 1.21483 0.93212 0.99419 0.97630 1.17705 0.90647 0.85345 1.04645 1.42981 1.22398 1.06862 1.55304 1.20370 0.86478 0.85477 0.78602 1.90797 1.18436 1.84127 1.45803 1.19910 0.87109 0.84877 0.79875 1.90705 1.17131 1.85439 1.49471 1.45829 1.14741 1.10017 1.60899 1.20868 0.92641 0.83045 0.98391 1.19078 0.98119 0.88866 0.94451 1.20648 0.98582 1.45450 0.89954 0.92716 1.25570 0.95481 0.94585 1.01245 1.70072 1.16999 1.42026 1.24617 0.85762 0.79121 0.77917 0.80417 1.19579 1.20388 1.21173 1.23058 0.97414 1.06428 0.95229 1.22389 0.96514 0.97991 1.01184 0.88509 0.88067 0.92340 0.80289 0.80941 0.74725 0.75497 0.85991 0.72680 0.74854 0.93767 0.91994 0.92989 0.90176 0.89084 0.90368 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.44 71.23 0.67 -0.63 16 2 C -0.07 -1.16 5.90 -19.68 -0.12 -1.28 16 3 C -0.10 -1.01 9.67 22.21 0.21 -0.80 16 4 C -0.08 -0.90 9.54 22.55 0.22 -0.68 16 5 C -0.15 -3.32 5.87 -20.10 -0.12 -3.43 16 6 C 0.56 13.63 8.05 86.79 0.70 14.33 16 7 N -0.82 -9.71 8.82 -175.59 -1.55 -11.26 16 8 O -0.59 -21.72 17.18 -3.88 -0.07 -21.78 16 9 C -0.10 -2.85 8.30 22.67 0.19 -2.66 16 10 C 0.11 2.72 6.38 38.17 0.24 2.97 16 11 N -0.63 -16.73 4.85 -304.94 -1.48 -18.22 16 12 C 0.51 17.61 7.76 87.24 0.68 18.29 16 13 O -0.52 -20.85 13.56 -3.33 -0.05 -20.89 16 14 C 0.50 19.06 7.88 87.24 0.69 19.75 16 15 O -0.55 -21.50 16.48 -3.28 -0.05 -21.55 16 16 N -0.67 -27.47 5.40 -464.52 -2.51 -29.98 16 17 C 0.17 7.74 5.57 86.38 0.48 8.22 16 18 C 0.00 -0.21 1.59 -52.93 -0.08 -0.29 16 19 C -0.51 -26.92 8.17 25.60 0.21 -26.72 16 20 H 0.05 2.92 7.82 -2.91 -0.02 2.90 16 21 C 0.03 1.77 5.43 84.66 0.46 2.22 16 22 N -0.90 -50.36 12.65 21.45 0.27 -50.09 16 23 Si 0.94 43.90 29.54 68.60 2.03 45.92 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 27 C -0.18 -7.57 9.93 30.62 0.30 -7.26 16 28 C -0.14 -6.45 9.18 30.62 0.28 -6.17 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.60 8.09 -2.39 -0.02 0.58 16 31 H 0.06 0.80 7.05 -2.39 -0.02 0.79 16 32 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 33 H 0.17 0.31 6.40 -2.91 -0.02 0.29 16 34 H 0.42 1.31 6.86 -92.70 -0.64 0.68 16 35 H 0.41 4.04 8.93 -92.71 -0.83 3.22 16 36 H 0.12 4.67 5.33 -2.91 -0.02 4.65 16 37 H 0.43 9.47 7.07 -92.71 -0.66 8.82 16 38 H 0.41 17.51 7.52 -92.71 -0.70 16.82 16 39 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.57 8.07 -2.39 -0.02 2.55 16 41 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 42 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 45 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -77.61 386.83 -0.11 -77.72 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -1.72 Total: 34.28 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 5.01 Total: 15.86 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -5.27 Total: -109.55 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -0.17 Total: -64.23 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -77.61 -0.11 -77.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430353206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.667 kcal (2) G-P(sol) polarization free energy of solvation -77.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds