Wall clock time and date at job start Wed Apr 1 2020 04:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.28571 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47450 * 89.99665 * 5 4 3 7 7 C 1.35706 * 117.00298 * 179.97438 * 6 5 4 8 8 C 1.38998 * 119.91127 * 359.72459 * 7 6 5 9 9 C 1.37703 * 120.08464 * 179.71929 * 8 7 6 10 10 C 1.39732 * 119.91070 * 0.58019 * 9 8 7 11 11 C 1.47607 * 120.08584 * 179.67439 * 10 9 8 12 12 O 1.21582 * 120.00114 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99886 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00014 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47279 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47396 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47081 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00591 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99440 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99741 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47029 * 59.99901 * 21 19 17 23 23 H 1.48503 * 109.47230 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47050 * 299.99799 * 21 19 17 25 25 C 1.39731 * 119.82961 * 359.69909 * 10 9 8 26 26 C 1.37706 * 119.90793 * 359.97438 * 25 10 9 27 27 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 28 28 O 1.21304 * 110.24811 * 359.71096 * 27 4 3 29 29 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 32 32 H 1.09001 * 109.47278 * 209.99816 * 5 4 3 33 33 H 1.08997 * 109.46942 * 329.99496 * 5 4 3 34 34 H 1.07992 * 119.95487 * 0.02562 * 8 7 6 35 35 H 1.08002 * 120.03874 * 180.27713 * 9 8 7 36 36 H 0.96995 * 119.99737 * 359.97438 * 13 11 10 37 37 H 1.09003 * 109.46973 * 299.99587 * 14 13 11 38 38 H 1.08998 * 109.47126 * 59.99412 * 14 13 11 39 39 H 1.08994 * 109.47277 * 299.99835 * 15 14 13 40 40 H 1.09005 * 109.46980 * 59.99566 * 15 14 13 41 41 H 1.09003 * 109.47111 * 299.99999 * 16 15 14 42 42 H 1.08998 * 109.46871 * 59.99754 * 16 15 14 43 43 H 0.96998 * 120.00178 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.04637 * 179.97438 * 25 10 9 45 45 H 1.07999 * 119.95275 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3887 0.0003 6 8 5.2114 1.6476 1.3474 7 6 6.3428 2.3756 1.5249 8 6 7.0570 2.8269 0.4211 9 6 8.2023 3.5708 0.5971 10 6 8.6530 3.8615 1.8874 11 6 9.8842 4.6525 2.0805 12 8 10.2752 4.9041 3.2039 13 7 10.5750 5.0958 1.0114 14 6 11.7966 5.8813 1.2030 15 6 12.3814 6.2555 -0.1603 16 6 13.6570 7.0765 0.0398 17 6 14.2326 7.4456 -1.3031 18 1 13.7385 7.1263 -2.2087 19 6 15.3908 8.1901 -1.3755 20 7 15.9935 8.5778 -0.2727 21 14 16.1048 8.6471 -3.0401 22 1 15.1138 9.4504 -3.8001 23 1 17.3435 9.4430 -2.8458 24 1 16.4252 7.4107 -3.7976 25 6 7.9355 3.4010 2.9945 26 6 6.7873 2.6634 2.8101 27 7 3.4646 -0.7242 0.0015 28 8 2.3029 -1.0735 0.0072 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 5.5986 0.8367 -0.5130 33 1 4.6349 2.3332 -0.5143 34 1 6.7104 2.5981 -0.5757 35 1 8.7542 3.9249 -0.2611 36 1 10.2632 4.8947 0.1152 37 1 11.5616 6.7887 1.7594 38 1 12.5241 5.2915 1.7606 39 1 12.6165 5.3480 -0.7163 40 1 11.6540 6.8452 -0.7182 41 1 13.4215 7.9841 0.5956 42 1 14.3845 6.4871 0.5979 43 1 16.8081 9.1019 -0.3237 44 1 8.2808 3.6232 3.9933 45 1 6.2319 2.3075 3.6653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521224086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:13 Heat of formation + Delta-G solvation = 12.097711 kcal Electronic energy + Delta-G solvation = -27336.189751 eV Core-core repulsion = 23129.345951 eV Total energy + Delta-G solvation = -4206.843800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.26609 -40.80058 -39.57340 -37.57155 -36.46194 -35.43876 -34.31365 -33.38996 -31.83836 -31.15745 -30.54145 -29.64080 -28.72587 -26.70709 -24.45196 -23.95633 -23.31780 -22.67803 -21.76743 -20.76404 -20.10175 -19.14234 -18.55781 -18.20780 -17.52920 -16.80544 -16.47664 -16.29939 -15.52057 -15.35422 -15.28955 -15.12482 -14.57282 -14.40540 -14.15525 -14.11060 -13.94581 -13.86549 -13.65336 -13.23786 -13.07268 -12.71296 -12.59694 -12.28688 -12.26523 -11.85294 -11.84461 -11.70045 -11.45348 -11.28861 -10.89072 -10.73641 -10.63541 -10.59075 -9.97339 -9.87556 -9.43300 -9.40540 -9.13865 -8.88590 -8.56717 -8.37415 -6.02104 -4.05457 0.46733 0.64717 0.98245 1.33130 2.17006 2.51085 2.79374 3.13009 3.31597 3.33352 3.36523 3.37260 3.39577 3.68576 4.12269 4.26898 4.42490 4.43928 4.46011 4.50892 4.59220 4.71845 4.73119 4.87537 4.89907 5.05159 5.15988 5.25005 5.31037 5.33585 5.57085 5.67751 5.76839 5.76889 5.87347 6.10599 6.15108 6.26454 6.46072 6.58561 6.79326 6.82562 6.98876 7.49502 7.62638 7.68020 7.75449 7.96341 8.34146 8.38549 9.00949 9.58738 11.09126 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.001408 C = 0.001331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.259913 B =19875.743797 C =21023.977875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.183 3.817 3 N -0.470 5.470 4 C 0.167 3.833 5 C 0.154 3.846 6 O -0.307 6.307 7 C 0.151 3.849 8 C -0.216 4.216 9 C -0.043 4.043 10 C -0.164 4.164 11 C 0.554 3.446 12 O -0.542 6.542 13 N -0.721 5.721 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.019 4.019 26 C -0.155 4.155 27 N -0.359 5.359 28 O 0.088 5.912 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.397 0.603 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.146 0.854 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.803 -19.454 0.199 39.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.038 4.038 3 N -0.205 5.205 4 C -0.106 4.106 5 C 0.077 3.923 6 O -0.219 6.219 7 C 0.105 3.895 8 C -0.234 4.234 9 C -0.062 4.062 10 C -0.168 4.168 11 C 0.341 3.659 12 O -0.421 6.421 13 N -0.372 5.372 14 C -0.006 4.006 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.038 4.038 26 C -0.174 4.174 27 N -0.065 5.065 28 O 0.024 5.976 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.164 0.836 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -32.617 -19.290 1.210 37.913 hybrid contribution 0.242 0.187 -1.623 1.652 sum -32.374 -19.102 -0.413 37.592 Atomic orbital electron populations 1.20468 0.79717 1.06255 1.05731 1.28934 0.99083 0.80330 0.95411 1.71908 0.99922 1.28918 1.19722 1.25112 0.94520 0.88111 1.02839 1.20616 0.89313 0.98662 0.83670 1.86021 1.40091 1.68457 1.27334 1.19158 0.85055 0.90770 0.94517 1.21148 0.98830 1.05381 0.98074 1.21145 0.94441 0.94150 0.96441 1.20010 0.98160 1.04575 0.94009 1.18143 0.83293 0.79478 0.84984 1.90777 1.69511 1.58197 1.23612 1.46135 1.27452 1.55014 1.08613 1.21683 0.84275 0.94792 0.99886 1.21898 1.00079 1.00546 0.93413 1.19025 0.90332 0.94649 0.97358 1.21164 1.08885 1.33667 0.92526 0.92705 1.25021 0.96925 0.95944 0.96474 1.69952 1.18959 1.37387 1.26935 0.86647 0.78460 0.78523 0.84286 1.20249 1.21247 1.20258 1.21118 0.91468 0.91793 0.99447 1.20392 0.98604 1.03644 0.94735 1.74696 0.97626 1.15415 1.18742 1.85331 1.11290 1.35857 1.65120 0.87708 0.88104 0.87434 0.88563 0.88087 0.84776 0.84875 0.76869 0.91556 0.91567 0.92709 0.92705 0.96231 0.96233 0.92853 0.83640 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.02 10.51 36.01 0.38 0.35 16 2 C 0.18 1.03 8.51 -13.05 -0.11 0.92 16 3 N -0.47 -4.00 11.55 -9.87 -0.11 -4.11 16 4 C 0.17 1.51 7.85 -156.38 -1.23 0.29 16 5 C 0.15 1.16 5.36 36.00 0.19 1.35 16 6 O -0.31 -3.01 10.11 -18.82 -0.19 -3.20 16 7 C 0.15 1.46 6.70 -39.02 -0.26 1.20 16 8 C -0.22 -1.84 9.01 -39.50 -0.36 -2.20 16 9 C -0.04 -0.41 9.53 -39.22 -0.37 -0.79 16 10 C -0.16 -2.01 5.87 -104.96 -0.62 -2.62 16 11 C 0.55 8.57 7.76 -12.43 -0.10 8.48 16 12 O -0.54 -10.39 16.34 5.29 0.09 -10.31 16 13 N -0.72 -10.53 5.51 -61.33 -0.34 -10.86 16 14 C 0.12 2.05 5.67 -4.05 -0.02 2.03 16 15 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.02 -0.22 9.58 -39.22 -0.38 -0.60 16 26 C -0.16 -1.55 9.97 -39.49 -0.39 -1.94 16 27 N -0.36 -3.41 12.16 30.90 0.38 -3.04 16 28 O 0.09 0.64 11.31 18.11 0.20 0.85 16 29 H 0.10 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 31 H 0.11 0.00 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 0.57 7.64 -51.93 -0.40 0.17 16 33 H 0.10 0.59 7.66 -51.93 -0.40 0.19 16 34 H 0.13 0.78 6.28 -52.49 -0.33 0.45 16 35 H 0.13 1.00 6.40 -52.49 -0.34 0.66 16 36 H 0.40 4.58 6.49 -40.82 -0.27 4.32 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.15 1.63 7.64 -52.49 -0.40 1.22 16 45 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -36.41 391.75 -8.20 -44.61 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.89 Total: -1.29 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.95 Total: -8.92 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.66 Total: -44.07 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.10 Total: -12.66 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.41 -8.20 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521224086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.709 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds