Wall clock time and date at job start Wed Apr 1 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.28571 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47450 * 89.99665 * 5 4 3 7 7 C 1.35706 * 117.00298 * 179.97438 * 6 5 4 8 8 C 1.38998 * 119.91127 * 359.72459 * 7 6 5 9 9 C 1.37703 * 120.08464 * 179.71929 * 8 7 6 10 10 C 1.39732 * 119.91070 * 0.58019 * 9 8 7 11 11 C 1.47607 * 120.08584 * 179.67439 * 10 9 8 12 12 O 1.21582 * 120.00114 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99886 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00014 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47279 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47396 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47081 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00591 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99440 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99741 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47029 * 59.99901 * 21 19 17 23 23 H 1.48503 * 109.47230 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47050 * 299.99799 * 21 19 17 25 25 C 1.39731 * 119.82961 * 359.69909 * 10 9 8 26 26 C 1.37706 * 119.90793 * 359.97438 * 25 10 9 27 27 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 28 28 O 1.21304 * 110.24811 * 359.71096 * 27 4 3 29 29 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 32 32 H 1.09001 * 109.47278 * 209.99816 * 5 4 3 33 33 H 1.08997 * 109.46942 * 329.99496 * 5 4 3 34 34 H 1.07992 * 119.95487 * 0.02562 * 8 7 6 35 35 H 1.08002 * 120.03874 * 180.27713 * 9 8 7 36 36 H 0.96995 * 119.99737 * 359.97438 * 13 11 10 37 37 H 1.09003 * 109.46973 * 299.99587 * 14 13 11 38 38 H 1.08998 * 109.47126 * 59.99412 * 14 13 11 39 39 H 1.08994 * 109.47277 * 299.99835 * 15 14 13 40 40 H 1.09005 * 109.46980 * 59.99566 * 15 14 13 41 41 H 1.09003 * 109.47111 * 299.99999 * 16 15 14 42 42 H 1.08998 * 109.46871 * 59.99754 * 16 15 14 43 43 H 0.96998 * 120.00178 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.04637 * 179.97438 * 25 10 9 45 45 H 1.07999 * 119.95275 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3887 0.0003 6 8 5.2114 1.6476 1.3474 7 6 6.3428 2.3756 1.5249 8 6 7.0570 2.8269 0.4211 9 6 8.2023 3.5708 0.5971 10 6 8.6530 3.8615 1.8874 11 6 9.8842 4.6525 2.0805 12 8 10.2752 4.9041 3.2039 13 7 10.5750 5.0958 1.0114 14 6 11.7966 5.8813 1.2030 15 6 12.3814 6.2555 -0.1603 16 6 13.6570 7.0765 0.0398 17 6 14.2326 7.4456 -1.3031 18 1 13.7385 7.1263 -2.2087 19 6 15.3908 8.1901 -1.3755 20 7 15.9935 8.5778 -0.2727 21 14 16.1048 8.6471 -3.0401 22 1 15.1138 9.4504 -3.8001 23 1 17.3435 9.4430 -2.8458 24 1 16.4252 7.4107 -3.7976 25 6 7.9355 3.4010 2.9945 26 6 6.7873 2.6634 2.8101 27 7 3.4646 -0.7242 0.0015 28 8 2.3029 -1.0735 0.0072 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 5.5986 0.8367 -0.5130 33 1 4.6349 2.3332 -0.5143 34 1 6.7104 2.5981 -0.5757 35 1 8.7542 3.9249 -0.2611 36 1 10.2632 4.8947 0.1152 37 1 11.5616 6.7887 1.7594 38 1 12.5241 5.2915 1.7606 39 1 12.6165 5.3480 -0.7163 40 1 11.6540 6.8452 -0.7182 41 1 13.4215 7.9841 0.5956 42 1 14.3845 6.4871 0.5979 43 1 16.8081 9.1019 -0.3237 44 1 8.2808 3.6232 3.9933 45 1 6.2319 2.3075 3.6653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521224086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:12 Heat of formation + Delta-G solvation = -13.780751 kcal Electronic energy + Delta-G solvation = -27337.311925 eV Core-core repulsion = 23129.345951 eV Total energy + Delta-G solvation = -4207.965974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.80735 -41.61982 -40.64876 -38.41874 -37.04931 -36.95370 -35.24631 -34.75088 -33.28641 -32.17158 -31.48385 -29.99451 -29.39455 -28.40752 -25.49165 -24.92261 -24.24080 -23.71153 -22.42499 -22.30791 -21.36665 -19.79951 -19.23656 -18.77457 -18.65085 -18.38485 -17.53507 -17.07240 -16.71763 -16.68317 -16.40099 -16.04874 -15.68794 -15.41570 -15.30403 -15.05677 -14.51120 -14.32094 -14.19594 -14.16899 -13.90370 -13.80971 -13.75528 -13.46591 -13.42846 -13.03807 -12.81533 -12.71591 -12.55221 -12.41796 -12.37320 -12.13131 -11.97953 -11.66983 -11.61445 -11.26845 -11.08179 -10.97492 -10.54042 -10.19220 -10.18359 -9.41071 -8.18588 -6.30322 -0.22083 -0.03072 0.23976 0.79618 1.42332 1.45324 1.53153 1.76479 1.78179 1.96554 2.13878 2.43320 2.64327 2.75941 2.85042 3.15248 3.56034 3.70195 3.75251 3.79028 3.92804 4.10732 4.16515 4.18560 4.21187 4.30712 4.44303 4.48693 4.54677 4.58923 4.66209 4.87490 4.89610 4.93892 4.94109 4.99341 5.11822 5.13630 5.16938 5.29298 5.38853 5.49765 5.53109 5.71096 5.84647 6.10641 6.22617 6.52833 6.87097 6.99005 7.17725 7.39407 8.93332 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.001408 C = 0.001331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.259913 B =19875.743797 C =21023.977875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.195 3.805 3 N -0.502 5.502 4 C 0.154 3.846 5 C 0.148 3.852 6 O -0.320 6.320 7 C 0.153 3.847 8 C -0.208 4.208 9 C -0.035 4.035 10 C -0.185 4.185 11 C 0.553 3.447 12 O -0.589 6.589 13 N -0.709 5.709 14 C 0.129 3.871 15 C -0.102 4.102 16 C 0.023 3.977 17 C -0.543 4.543 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.027 4.027 26 C -0.160 4.160 27 N -0.385 5.385 28 O 0.083 5.917 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.414 0.586 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.070 0.930 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.137 0.863 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.203 -20.545 -2.645 41.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.024 4.024 3 N -0.237 5.237 4 C -0.118 4.118 5 C 0.072 3.928 6 O -0.233 6.233 7 C 0.107 3.893 8 C -0.226 4.226 9 C -0.053 4.053 10 C -0.188 4.188 11 C 0.343 3.657 12 O -0.471 6.471 13 N -0.361 5.361 14 C 0.005 3.995 15 C -0.140 4.140 16 C -0.015 4.015 17 C -0.581 4.581 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.046 4.046 26 C -0.179 4.179 27 N -0.093 5.093 28 O 0.021 5.979 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.185 0.815 35 H 0.175 0.825 36 H 0.252 0.748 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.155 0.845 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -35.069 -20.405 -1.674 40.608 hybrid contribution 0.818 0.452 -0.712 1.175 sum -34.251 -19.953 -2.385 39.711 Atomic orbital electron populations 1.20841 0.76114 1.07695 1.07476 1.29928 1.00547 0.79230 0.92695 1.71924 1.00150 1.30101 1.21508 1.25436 0.95309 0.88249 1.02825 1.20904 0.89406 0.99707 0.82746 1.86000 1.39960 1.68277 1.29022 1.19287 0.85033 0.90232 0.94737 1.21463 0.97842 1.04030 0.99256 1.21373 0.94670 0.93462 0.95843 1.19804 0.97397 1.05966 0.95656 1.18655 0.83915 0.78965 0.84205 1.90750 1.70887 1.60052 1.25394 1.45867 1.26261 1.54359 1.09630 1.21280 0.85264 0.94417 0.98540 1.21606 0.97558 1.00331 0.94476 1.18945 0.92520 0.94021 0.95986 1.21662 1.09206 1.33474 0.93713 0.91410 1.26015 0.97489 0.95883 1.00596 1.70106 1.19519 1.38330 1.29591 0.85478 0.77609 0.78582 0.79230 1.18978 1.21231 1.19019 1.21090 0.92072 0.92383 0.99078 1.20475 0.98228 1.03473 0.95713 1.74670 0.98770 1.15886 1.20018 1.85291 1.11019 1.36332 1.65304 0.85529 0.85795 0.86731 0.86847 0.86240 0.81465 0.82467 0.74757 0.93058 0.93096 0.91177 0.91147 0.98960 0.98986 0.92837 0.84547 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.12 10.51 71.24 0.75 0.87 16 2 C 0.20 1.90 8.51 88.38 0.75 2.65 16 3 N -0.50 -7.93 11.55 -303.20 -3.50 -11.43 16 4 C 0.15 2.62 7.85 138.46 1.09 3.71 16 5 C 0.15 1.92 5.36 71.24 0.38 2.31 16 6 O -0.32 -5.74 10.11 -90.27 -0.91 -6.65 16 7 C 0.15 2.68 6.70 22.64 0.15 2.83 16 8 C -0.21 -2.90 9.01 22.33 0.20 -2.69 16 9 C -0.03 -0.58 9.53 22.50 0.21 -0.36 16 10 C -0.18 -4.38 5.87 -20.08 -0.12 -4.50 16 11 C 0.55 17.19 7.76 86.72 0.67 17.87 16 12 O -0.59 -23.48 16.34 -3.97 -0.06 -23.54 16 13 N -0.71 -20.10 5.51 -466.20 -2.57 -22.66 16 14 C 0.13 4.61 5.67 86.38 0.49 5.10 16 15 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 16 C 0.02 1.20 4.97 29.85 0.15 1.34 16 17 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 19 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 20 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 21 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 C -0.03 -0.62 9.58 22.50 0.22 -0.40 16 26 C -0.16 -3.08 9.97 22.33 0.22 -2.86 16 27 N -0.39 -7.04 12.16 -60.33 -0.73 -7.77 16 28 O 0.08 1.14 11.31 74.86 0.85 1.99 16 29 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.11 1.03 7.64 -2.39 -0.02 1.02 16 33 H 0.12 1.06 7.66 -2.39 -0.02 1.04 16 34 H 0.17 1.19 6.28 -2.91 -0.02 1.17 16 35 H 0.16 1.76 6.40 -2.91 -0.02 1.74 16 36 H 0.41 8.59 6.49 -92.71 -0.60 7.99 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.14 3.25 7.64 -2.91 -0.02 3.23 16 45 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -81.61 391.75 1.83 -79.77 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.43 Total: 9.08 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 6.03 Total: -7.45 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -6.52 Total: -98.82 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.13 Total: -28.21 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -81.61 1.83 -79.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521224086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.991 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds