Wall clock time and date at job start Wed Apr 1 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99690 * 2 1 4 4 N 1.46501 * 109.46873 * 180.02562 * 3 2 1 5 5 N 1.40090 * 126.03699 * 90.02633 * 4 3 2 6 6 C 1.30838 * 108.20347 * 180.02562 * 5 4 3 7 7 C 1.50702 * 125.89882 * 180.02562 * 6 5 4 8 8 C 1.39875 * 108.20512 * 359.97438 * 6 5 4 9 9 S 1.76199 * 126.04158 * 179.97438 * 8 6 5 10 10 O 1.42101 * 106.40207 * 203.56471 * 9 8 6 11 11 O 1.42094 * 106.39983 * 336.48535 * 9 8 6 12 12 N 1.65598 * 107.21633 * 90.02799 * 9 8 6 13 13 C 1.46495 * 120.00232 * 89.99869 * 12 9 8 14 14 C 1.50702 * 109.47161 * 95.00126 * 13 12 9 15 15 H 1.08004 * 119.99935 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00309 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99871 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99806 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46965 * 89.99923 * 18 16 14 20 20 H 1.48493 * 109.47106 * 209.99914 * 18 16 14 21 21 H 1.48497 * 109.47231 * 330.00106 * 18 16 14 22 22 C 1.46504 * 119.99827 * 269.99856 * 12 9 8 23 23 C 1.53000 * 109.47071 * 120.00065 * 22 12 9 24 24 C 1.52998 * 109.47249 * 240.00481 * 22 12 9 25 25 C 1.34951 * 126.03605 * 270.31201 * 4 3 2 26 26 C 1.50700 * 126.12519 * 359.97438 * 25 4 3 27 27 H 1.08994 * 109.47373 * 300.00292 * 1 2 3 28 28 H 1.09001 * 109.47236 * 59.99921 * 1 2 3 29 29 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46872 * 60.00057 * 3 2 1 31 31 H 1.08997 * 109.47310 * 300.00073 * 3 2 1 32 32 H 1.09000 * 109.46639 * 269.97388 * 7 6 5 33 33 H 1.09000 * 109.47131 * 29.97372 * 7 6 5 34 34 H 1.09002 * 109.46831 * 149.97364 * 7 6 5 35 35 H 1.09003 * 109.47178 * 214.99507 * 13 12 9 36 36 H 1.08990 * 109.47424 * 334.99858 * 13 12 9 37 37 H 0.97001 * 119.99562 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.47147 * 359.97438 * 22 12 9 39 39 H 1.08998 * 109.47161 * 60.00543 * 23 22 12 40 40 H 1.09002 * 109.46752 * 180.02562 * 23 22 12 41 41 H 1.09000 * 109.47221 * 299.99866 * 23 22 12 42 42 H 1.09001 * 109.47388 * 59.99617 * 24 22 12 43 43 H 1.08998 * 109.47605 * 180.02562 * 24 22 12 44 44 H 1.09005 * 109.46965 * 299.99871 * 24 22 12 45 45 H 1.09003 * 109.46893 * 270.17807 * 26 25 4 46 46 H 1.08991 * 109.47642 * 30.17943 * 26 25 4 47 47 H 1.09000 * 109.46654 * 150.18374 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 7 3.4706 1.1899 -0.0006 5 7 4.2918 1.1256 -1.1338 6 6 5.5335 1.0264 -0.7336 7 6 6.7444 0.9314 -1.6256 8 6 5.5431 1.0250 0.6651 9 16 6.9703 0.9102 1.6919 10 8 6.5259 0.3985 2.9409 11 8 7.9780 0.2841 0.9098 12 7 7.4933 2.4550 1.9789 13 6 6.9875 3.1963 3.1368 14 6 7.9457 3.0421 4.2897 15 1 8.8416 2.4505 4.1718 16 6 7.6782 3.6552 5.4953 17 7 8.5142 3.5201 6.5016 18 14 6.1283 4.6777 5.6995 19 1 5.0223 3.8100 6.1783 20 1 6.3743 5.7573 6.6889 21 1 5.7560 5.2785 4.3935 22 6 8.4617 3.0803 1.0748 23 6 7.8495 4.3435 0.4663 24 6 9.7238 3.4507 1.8564 25 6 4.2620 1.1211 1.0903 26 6 3.8018 1.1500 2.5250 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8465 -0.8899 32 1 6.9552 -0.1160 -1.8416 33 1 6.5519 1.4629 -2.5575 34 1 7.6020 1.3785 -1.1228 35 1 6.8947 4.2517 2.8803 36 1 6.0110 2.8043 3.4210 37 1 8.3261 3.9518 7.3496 38 1 8.7197 2.3814 0.2791 39 1 7.5919 5.0422 1.2622 40 1 8.5699 4.8084 -0.2068 41 1 6.9504 4.0796 -0.0906 42 1 10.1599 2.5507 2.2900 43 1 10.4442 3.9163 1.1839 44 1 9.4662 4.1494 2.6524 45 1 3.7693 2.1817 2.8754 46 1 2.8070 0.7106 2.5965 47 1 4.4965 0.5789 3.1409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562414984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:31 Heat of formation + Delta-G solvation = -35.928496 kcal Electronic energy + Delta-G solvation = -30712.210590 eV Core-core repulsion = 26638.728169 eV Total energy + Delta-G solvation = -4073.482421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.44447 -38.30260 -36.99879 -36.62631 -35.12544 -33.81505 -32.66143 -32.07661 -30.82120 -29.38346 -27.52200 -27.25400 -26.92518 -26.57616 -24.96439 -22.38935 -21.28790 -20.27727 -19.82047 -18.13021 -17.49183 -17.35553 -17.03093 -16.77071 -16.36449 -15.64342 -15.28562 -15.02894 -14.38273 -14.27253 -13.93841 -13.68276 -13.59356 -13.33937 -13.29391 -12.95790 -12.80222 -12.68077 -12.54622 -12.49867 -12.10307 -12.04996 -11.89375 -11.82674 -11.56592 -11.37444 -11.27361 -11.06310 -10.92403 -10.90058 -10.82071 -10.46630 -10.34480 -10.31898 -10.16869 -10.00289 -9.41998 -9.31348 -9.07356 -8.56219 -8.05580 -6.05384 -4.02456 1.08830 1.42684 2.10054 2.33432 3.24599 3.29360 3.32477 3.49647 3.77936 4.13101 4.38430 4.38687 4.47089 4.47947 4.65122 4.79407 4.84990 4.91900 5.02923 5.19092 5.22012 5.31649 5.37815 5.50478 5.61908 5.65333 5.69450 5.76457 5.85890 5.96075 6.00963 6.17669 6.18938 6.28196 6.39767 6.44286 6.51295 6.53630 6.74912 6.82453 6.85462 7.10838 7.29214 7.48290 7.50085 7.61948 8.53117 9.02361 9.54046 11.07970 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.004854 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.068826 B = 5767.381681 C = 7132.825251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.404 6.404 3 C 0.304 3.696 4 N -0.368 5.368 5 N -0.295 5.295 6 C 0.166 3.834 7 C -0.087 4.087 8 C -0.815 4.815 9 S 2.715 3.285 10 O -0.947 6.947 11 O -0.970 6.970 12 N -0.974 5.974 13 C 0.226 3.774 14 C -0.521 4.521 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.863 3.137 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.149 3.851 23 C -0.162 4.162 24 C -0.153 4.153 25 C 0.227 3.773 26 C -0.142 4.142 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 -0.843 -14.438 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.322 6.322 3 C 0.144 3.856 4 N -0.150 5.150 5 N -0.114 5.114 6 C -0.004 4.004 7 C -0.146 4.146 8 C -0.910 4.910 9 S 2.802 3.198 10 O -0.937 6.937 11 O -0.961 6.961 12 N -0.813 5.813 13 C 0.102 3.898 14 C -0.561 4.561 15 H 0.102 0.898 16 C -0.128 4.128 17 N -0.533 5.533 18 Si 0.690 3.310 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.043 3.957 23 C -0.221 4.221 24 C -0.212 4.212 25 C 0.096 3.904 26 C -0.200 4.200 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.282 -1.635 -14.985 20.091 hybrid contribution -1.324 1.097 0.551 1.806 sum -14.605 -0.538 -14.434 20.542 Atomic orbital electron populations 1.22754 0.78615 1.03810 1.00546 1.87908 1.21105 1.27696 1.95498 1.22294 0.74779 0.85590 1.02962 1.48828 1.05625 1.56612 1.03944 1.77323 1.01205 1.26231 1.06619 1.21895 0.93935 0.93289 0.91292 1.20515 0.91882 1.04370 0.97797 1.31824 1.16774 1.33667 1.08716 1.01236 0.72756 0.73002 0.72796 1.93508 1.82254 1.77531 1.40428 1.93483 1.56199 1.74042 1.72336 1.57333 1.54217 1.34141 1.35575 1.19426 0.94711 0.92434 0.83190 1.21424 1.08405 1.31944 0.94285 0.89845 1.24833 0.96113 0.96190 0.95702 1.69888 1.36415 1.44175 1.02871 0.87057 0.84746 0.80716 0.78459 1.19878 1.21100 1.19044 1.20719 0.89258 0.94518 0.91218 1.22181 1.00448 0.98638 1.00832 1.22132 0.95316 1.03083 1.00634 1.21043 0.89114 0.88998 0.91257 1.21325 1.04598 1.05786 0.88311 0.93278 0.93388 0.88712 0.89234 0.89217 0.89130 0.90389 0.89063 0.94741 0.95606 0.92644 0.89749 0.91576 0.92154 0.93212 0.92343 0.93490 0.89709 0.88505 0.90079 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 11.01 101.05 1.11 1.37 16 2 O -0.40 -4.59 10.93 -35.23 -0.39 -4.98 16 3 C 0.30 3.25 6.87 59.85 0.41 3.66 16 4 N -0.37 -5.53 3.88 -61.90 -0.24 -5.77 16 5 N -0.29 -4.84 12.58 33.67 0.42 -4.41 16 6 C 0.17 2.73 7.21 -82.40 -0.59 2.14 16 7 C -0.09 -1.17 9.53 36.01 0.34 -0.82 16 8 C -0.81 -14.34 6.17 -40.01 -0.25 -14.59 16 9 S 2.71 54.12 5.61 -107.50 -0.60 53.52 16 10 O -0.95 -21.43 14.21 -57.17 -0.81 -22.24 16 11 O -0.97 -19.78 14.48 -57.17 -0.83 -20.61 16 12 N -0.97 -19.27 2.73 -108.57 -0.30 -19.56 16 13 C 0.23 5.01 3.74 -5.20 -0.02 4.99 16 14 C -0.52 -13.92 8.08 -34.44 -0.28 -14.20 16 15 H 0.08 2.44 7.32 -52.48 -0.38 2.06 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 18 Si 0.86 20.06 27.47 -169.99 -4.67 15.39 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 22 C 0.15 2.54 3.24 -67.93 -0.22 2.32 16 23 C -0.16 -2.33 9.16 37.16 0.34 -1.99 16 24 C -0.15 -2.72 8.21 37.16 0.30 -2.42 16 25 C 0.23 3.68 6.92 -82.26 -0.57 3.11 16 26 C -0.14 -2.03 9.57 36.01 0.34 -1.69 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.70 7.68 -51.93 -0.40 0.30 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.22 5.59 -51.93 -0.29 0.92 16 35 H 0.03 0.74 5.51 -51.93 -0.29 0.45 16 36 H 0.03 0.57 7.00 -51.93 -0.36 0.20 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.31 5.63 -51.93 -0.29 1.02 16 39 H 0.07 1.02 6.69 -51.93 -0.35 0.67 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.70 6.65 -51.93 -0.35 1.36 16 45 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 46 H 0.08 0.91 7.74 -51.93 -0.40 0.51 16 47 H 0.13 2.23 5.54 -51.93 -0.29 1.94 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -34.97 384.75 -7.21 -42.18 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.20 Total: 2.61 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 0.83 Total: -16.18 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.66 Total: -55.49 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -2.03 Total: -47.82 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Atomic # 16 Polarization: 54.12 SS G_CDS: -0.60 Total: 53.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.97 -7.21 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562414984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.249 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds