Wall clock time and date at job start Wed Apr 1 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00027 * 2 1 4 4 C 1.52999 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47243 * 64.99686 * 4 3 2 6 6 C 1.46498 * 119.99898 * 269.86818 * 5 4 3 7 7 C 1.50702 * 109.47122 * 262.39202 * 6 5 4 8 8 H 1.08000 * 120.00195 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00212 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99728 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00184 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47225 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46941 * 120.00360 * 11 9 7 14 14 H 1.48497 * 109.47353 * 240.00224 * 11 9 7 15 15 C 1.34776 * 120.00314 * 89.86914 * 5 4 3 16 16 O 1.21362 * 119.99607 * 1.71025 * 15 5 4 17 17 C 1.49354 * 120.00403 * 181.43918 * 15 5 4 18 18 O 1.21379 * 119.99751 * 356.07926 * 17 15 5 19 19 N 1.34775 * 120.00003 * 176.07847 * 17 15 5 20 20 C 1.39753 * 119.99718 * 183.67607 * 19 17 15 21 21 C 1.39054 * 120.00099 * 142.71771 * 20 19 17 22 22 C 1.38200 * 120.22387 * 179.73988 * 21 20 19 23 23 C 1.50705 * 119.88023 * 180.27543 * 22 21 20 24 24 C 1.38019 * 120.23801 * 0.55315 * 22 21 20 25 25 C 1.39643 * 120.00035 * 359.70040 * 24 22 21 26 26 C 1.43203 * 120.11607 * 180.02562 * 25 24 22 27 27 N 9.38083 * 107.19343 * 53.97594 * 4 1 2 28 28 C 1.38642 * 119.99894 * 322.98733 * 20 19 17 29 29 H 1.09001 * 109.46827 * 60.00522 * 1 2 3 30 30 H 1.08997 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47017 * 300.00609 * 1 2 3 32 32 H 1.08996 * 109.47459 * 59.99547 * 3 2 1 33 33 H 1.09001 * 109.47395 * 299.99302 * 3 2 1 34 34 H 1.09003 * 109.47216 * 304.99572 * 4 3 2 35 35 H 1.09002 * 109.47523 * 184.99434 * 4 3 2 36 36 H 1.09000 * 109.47374 * 22.39469 * 6 5 4 37 37 H 1.09003 * 109.47225 * 142.39520 * 6 5 4 38 38 H 0.96999 * 120.00344 * 180.02562 * 10 9 7 39 39 H 0.96996 * 120.00297 * 3.66767 * 19 17 15 40 40 H 1.07996 * 119.88526 * 359.97438 * 21 20 19 41 41 H 1.09002 * 109.46882 * 270.27652 * 23 22 21 42 42 H 1.09000 * 109.47054 * 30.27235 * 23 22 21 43 43 H 1.08996 * 109.47334 * 150.27730 * 23 22 21 44 44 H 1.08007 * 120.00205 * 179.71936 * 24 22 21 45 45 H 1.07994 * 120.12096 * 359.95697 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1091 -0.8925 -1.3392 7 6 5.5495 -1.2799 -1.1239 8 1 6.2919 -0.5177 -0.9392 9 6 5.9193 -2.6077 -1.1616 10 7 5.0151 -3.5360 -1.3860 11 14 7.7048 -3.0879 -0.8955 12 1 8.5169 -1.8662 -0.6649 13 1 7.8063 -3.9798 0.2875 14 1 8.2104 -3.7995 -2.0968 15 6 4.2609 1.3325 -2.3208 16 8 4.1812 2.5407 -2.2383 17 6 4.6798 0.6978 -3.6063 18 8 4.8332 -0.5047 -3.6676 19 7 4.8873 1.4602 -4.6981 20 6 5.2042 0.8598 -5.9196 21 6 4.6972 1.3833 -7.1039 22 6 5.0120 0.7965 -8.3149 23 6 4.4632 1.3739 -9.5942 24 6 5.8224 -0.3200 -8.3564 25 6 6.3325 -0.8569 -7.1726 26 6 7.1741 -2.0149 -7.2129 27 7 7.8392 -2.9280 -7.2495 28 6 6.0195 -0.2611 -5.9502 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5685 0.8428 35 1 3.9785 2.1765 0.0901 36 1 3.4887 -1.3608 -0.5751 37 1 3.7862 -1.2275 -2.3250 38 1 5.2751 -4.4701 -1.4122 39 1 4.8167 2.4256 -4.6361 40 1 4.0584 2.2537 -7.0775 41 1 3.5034 0.9094 -9.8202 42 1 4.3282 2.4494 -9.4788 43 1 5.1612 1.1807 -10.4088 44 1 6.0622 -0.7783 -9.3046 45 1 6.4114 -0.6715 -5.0313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590783813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:57 Heat of formation + Delta-G solvation = -37.588342 kcal Electronic energy + Delta-G solvation = -30264.877648 eV Core-core repulsion = 26055.879300 eV Total energy + Delta-G solvation = -4208.998349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.73790 -39.49780 -38.11486 -37.34490 -36.52913 -35.56547 -34.36357 -32.68382 -32.51734 -30.17408 -29.93471 -27.14253 -27.05488 -26.19210 -24.81157 -23.92494 -22.83930 -22.61591 -20.77837 -19.45644 -18.44954 -17.17165 -16.69259 -16.53056 -16.29298 -16.08256 -15.87208 -15.64198 -15.29320 -15.04266 -14.60112 -14.55674 -14.22852 -14.09821 -13.49064 -13.45728 -13.41040 -13.17326 -12.99195 -12.91527 -12.33752 -12.30509 -12.11415 -11.99863 -11.88527 -11.79651 -11.62888 -11.61522 -11.36609 -10.93993 -10.89391 -10.78988 -10.43615 -10.14911 -9.96043 -9.63086 -9.46263 -8.90071 -8.71085 -8.26060 -8.16975 -7.83788 -5.98223 -4.00815 0.74005 1.19015 2.05545 2.69522 2.87107 3.01418 3.32984 3.42160 3.43182 3.74179 3.87435 3.93255 4.04491 4.10422 4.48758 4.65047 4.90568 4.97892 5.02911 5.07266 5.29277 5.30183 5.38460 5.40281 5.42117 5.52741 5.55935 5.57557 5.59743 5.60767 5.79785 5.81394 5.89482 6.14423 6.20635 6.27633 6.32402 6.38406 6.68354 6.88499 7.29154 7.39520 7.50137 7.56777 7.60046 7.91569 8.11235 8.23157 8.29812 8.60671 9.00605 9.61739 11.10351 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.004263 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.615405 B = 6566.034157 C = 8923.446601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.116 3.884 5 N -0.548 5.548 6 C 0.228 3.772 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.072 3.928 10 N -0.886 5.886 11 Si 0.886 3.114 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.507 3.493 16 O -0.566 6.566 17 C 0.490 3.510 18 O -0.428 6.428 19 N -0.664 5.664 20 C 0.162 3.838 21 C -0.118 4.118 22 C -0.073 4.073 23 C -0.112 4.112 24 C -0.092 4.092 25 C -0.006 4.006 26 C 0.260 3.740 27 N -0.416 5.416 28 C -0.076 4.076 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.261 0.739 39 H 0.418 0.582 40 H 0.133 0.867 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 13.359 -9.644 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.007 4.007 5 N -0.277 5.277 6 C 0.109 3.891 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.131 4.131 10 N -0.524 5.524 11 Si 0.714 3.286 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.289 3.711 16 O -0.448 6.448 17 C 0.272 3.728 18 O -0.295 6.295 19 N -0.313 5.313 20 C 0.067 3.933 21 C -0.139 4.139 22 C -0.073 4.073 23 C -0.168 4.168 24 C -0.113 4.113 25 C -0.010 4.010 26 C -0.056 4.056 27 N -0.091 5.091 28 C -0.099 4.099 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.256 0.744 40 H 0.151 0.849 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.149 0.851 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.514 11.231 -9.573 15.754 hybrid contribution 0.474 0.556 0.369 0.818 sum -5.040 11.786 -9.204 15.781 Atomic orbital electron populations 1.22693 0.81928 1.02573 0.99189 1.88075 1.18864 1.27169 1.95210 1.22985 0.94750 0.85205 1.00055 1.21551 0.91551 1.00002 0.87607 1.48253 1.59297 1.11169 1.08957 1.20073 0.97505 0.70777 1.00703 1.21274 0.93194 0.92186 1.49200 0.92879 1.24768 0.96959 0.96324 0.95049 1.69927 1.32947 1.00537 1.48999 0.86634 0.85547 0.78571 0.77819 1.19909 1.20977 1.20953 1.19673 0.79717 0.86433 0.85242 1.90647 1.55679 1.13855 1.84610 1.20482 0.79767 0.87553 0.85011 1.90992 1.42901 1.12978 1.82646 1.43246 1.70108 1.11307 1.06682 1.17450 0.95569 0.95040 0.85265 1.21018 1.00236 1.01979 0.90688 1.19500 0.97580 0.95247 0.95003 1.20779 1.01250 1.00966 0.93827 1.20946 0.97684 0.95888 0.96781 1.15781 0.98859 0.92014 0.94314 1.25368 0.93427 0.93038 0.93777 1.80980 1.10023 1.10778 1.07282 1.21442 0.95277 0.95146 0.97991 0.94598 0.89738 0.94627 0.92768 0.93300 0.88753 0.88915 0.93721 0.91421 0.92945 0.74395 0.84910 0.90845 0.91233 0.91278 0.85121 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.39 9.69 -35.23 -0.34 -6.73 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 1.99 5.79 -4.04 -0.02 1.96 16 5 N -0.55 -11.33 2.44 -175.60 -0.43 -11.76 16 6 C 0.23 5.65 4.53 -5.19 -0.02 5.63 16 7 C -0.52 -14.12 8.09 -34.44 -0.28 -14.39 16 8 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 10 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 11 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 15 C 0.51 10.00 7.66 -11.63 -0.09 9.91 16 16 O -0.57 -10.83 16.05 5.49 0.09 -10.74 16 17 C 0.49 9.34 7.57 -11.63 -0.09 9.25 16 18 O -0.43 -9.70 9.84 5.47 0.05 -9.65 16 19 N -0.66 -9.68 5.32 -10.33 -0.05 -9.74 16 20 C 0.16 2.20 6.25 -83.80 -0.52 1.68 16 21 C -0.12 -1.21 9.61 -39.29 -0.38 -1.58 16 22 C -0.07 -0.67 5.87 -104.71 -0.61 -1.28 16 23 C -0.11 -0.68 10.00 36.01 0.36 -0.32 16 24 C -0.09 -0.96 9.40 -39.14 -0.37 -1.33 16 25 C -0.01 -0.08 5.73 -106.96 -0.61 -0.69 16 26 C 0.26 4.18 15.31 -22.66 -0.35 3.83 16 27 N -0.42 -7.61 18.50 41.62 0.77 -6.84 16 28 C -0.08 -1.18 8.38 -38.95 -0.33 -1.51 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 35 H 0.09 1.45 7.40 -51.93 -0.38 1.07 16 36 H 0.04 1.19 7.30 -51.93 -0.38 0.81 16 37 H 0.07 1.84 5.57 -51.93 -0.29 1.55 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.42 5.06 8.30 -40.82 -0.34 4.72 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 43 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 44 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.15 2.88 6.40 -52.49 -0.34 2.55 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -33.51 393.22 -6.25 -39.76 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.91 Total: 2.46 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: -2.06 Total: 15.56 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 1.02 Total: -53.69 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.20 Total: -27.12 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.51 -6.25 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590783813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.175 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds