Wall clock time and date at job start Wed Apr 1 2020 02:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00027 * 2 1 4 4 C 1.52999 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47243 * 64.99686 * 4 3 2 6 6 C 1.46498 * 119.99898 * 269.86818 * 5 4 3 7 7 C 1.50702 * 109.47122 * 262.39202 * 6 5 4 8 8 H 1.08000 * 120.00195 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00212 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99728 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00184 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47225 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46941 * 120.00360 * 11 9 7 14 14 H 1.48497 * 109.47353 * 240.00224 * 11 9 7 15 15 C 1.34776 * 120.00314 * 89.86914 * 5 4 3 16 16 O 1.21362 * 119.99607 * 1.71025 * 15 5 4 17 17 C 1.49354 * 120.00403 * 181.43918 * 15 5 4 18 18 O 1.21379 * 119.99751 * 356.07926 * 17 15 5 19 19 N 1.34775 * 120.00003 * 176.07847 * 17 15 5 20 20 C 1.39753 * 119.99718 * 183.67607 * 19 17 15 21 21 C 1.39054 * 120.00099 * 142.71771 * 20 19 17 22 22 C 1.38200 * 120.22387 * 179.73988 * 21 20 19 23 23 C 1.50705 * 119.88023 * 180.27543 * 22 21 20 24 24 C 1.38019 * 120.23801 * 0.55315 * 22 21 20 25 25 C 1.39643 * 120.00035 * 359.70040 * 24 22 21 26 26 C 1.43203 * 120.11607 * 180.02562 * 25 24 22 27 27 N 9.38083 * 107.19343 * 53.97594 * 4 1 2 28 28 C 1.38642 * 119.99894 * 322.98733 * 20 19 17 29 29 H 1.09001 * 109.46827 * 60.00522 * 1 2 3 30 30 H 1.08997 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47017 * 300.00609 * 1 2 3 32 32 H 1.08996 * 109.47459 * 59.99547 * 3 2 1 33 33 H 1.09001 * 109.47395 * 299.99302 * 3 2 1 34 34 H 1.09003 * 109.47216 * 304.99572 * 4 3 2 35 35 H 1.09002 * 109.47523 * 184.99434 * 4 3 2 36 36 H 1.09000 * 109.47374 * 22.39469 * 6 5 4 37 37 H 1.09003 * 109.47225 * 142.39520 * 6 5 4 38 38 H 0.96999 * 120.00344 * 180.02562 * 10 9 7 39 39 H 0.96996 * 120.00297 * 3.66767 * 19 17 15 40 40 H 1.07996 * 119.88526 * 359.97438 * 21 20 19 41 41 H 1.09002 * 109.46882 * 270.27652 * 23 22 21 42 42 H 1.09000 * 109.47054 * 30.27235 * 23 22 21 43 43 H 1.08996 * 109.47334 * 150.27730 * 23 22 21 44 44 H 1.08007 * 120.00205 * 179.71936 * 24 22 21 45 45 H 1.07994 * 120.12096 * 359.95697 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1091 -0.8925 -1.3392 7 6 5.5495 -1.2799 -1.1239 8 1 6.2919 -0.5177 -0.9392 9 6 5.9193 -2.6077 -1.1616 10 7 5.0151 -3.5360 -1.3860 11 14 7.7048 -3.0879 -0.8955 12 1 8.5169 -1.8662 -0.6649 13 1 7.8063 -3.9798 0.2875 14 1 8.2104 -3.7995 -2.0968 15 6 4.2609 1.3325 -2.3208 16 8 4.1812 2.5407 -2.2383 17 6 4.6798 0.6978 -3.6063 18 8 4.8332 -0.5047 -3.6676 19 7 4.8873 1.4602 -4.6981 20 6 5.2042 0.8598 -5.9196 21 6 4.6972 1.3833 -7.1039 22 6 5.0120 0.7965 -8.3149 23 6 4.4632 1.3739 -9.5942 24 6 5.8224 -0.3200 -8.3564 25 6 6.3325 -0.8569 -7.1726 26 6 7.1741 -2.0149 -7.2129 27 7 7.8392 -2.9280 -7.2495 28 6 6.0195 -0.2611 -5.9502 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5685 0.8428 35 1 3.9785 2.1765 0.0901 36 1 3.4887 -1.3608 -0.5751 37 1 3.7862 -1.2275 -2.3250 38 1 5.2751 -4.4701 -1.4122 39 1 4.8167 2.4256 -4.6361 40 1 4.0584 2.2537 -7.0775 41 1 3.5034 0.9094 -9.8202 42 1 4.3282 2.4494 -9.4788 43 1 5.1612 1.1807 -10.4088 44 1 6.0622 -0.7783 -9.3046 45 1 6.4114 -0.6715 -5.0313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590783813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:56 Heat of formation + Delta-G solvation = -59.909621 kcal Electronic energy + Delta-G solvation = -30265.845572 eV Core-core repulsion = 26055.879300 eV Total energy + Delta-G solvation = -4209.966272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.10335 -40.74096 -39.44324 -38.65003 -37.84885 -37.06056 -35.72836 -34.57503 -33.61528 -31.49842 -31.15219 -28.97500 -27.85662 -27.32797 -26.19831 -25.00604 -24.75934 -23.85269 -21.95585 -20.84090 -19.64277 -18.79142 -18.43761 -18.04741 -17.34172 -17.25591 -17.12780 -16.83602 -16.73198 -16.59554 -16.18544 -15.84855 -15.73122 -15.26920 -14.91367 -14.71166 -14.43161 -14.32170 -14.27863 -14.11073 -13.98446 -13.63657 -13.42589 -13.20215 -13.05806 -12.92477 -12.84249 -12.80484 -12.76699 -12.52480 -12.40815 -12.33953 -12.06801 -11.82281 -11.66157 -11.30261 -10.68810 -10.59388 -10.11952 -9.76049 -9.59917 -9.24198 -8.15287 -6.22969 -0.28378 0.10693 0.63520 1.30591 1.34442 1.37946 1.42915 1.57359 1.84618 2.25213 2.36894 2.60198 2.82042 2.82808 2.95008 3.19196 3.44992 3.83873 4.07955 4.12638 4.13388 4.19371 4.32181 4.33836 4.39416 4.53119 4.55495 4.59378 4.63327 4.85753 4.86914 4.89616 5.01355 5.03260 5.15631 5.16658 5.26058 5.39411 5.47018 5.51485 5.60387 5.80147 5.89719 6.09974 6.15312 6.27855 6.33966 6.38843 6.81063 6.85580 7.11733 7.42737 8.92659 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.004263 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.615405 B = 6566.034157 C = 8923.446601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.557 5.557 6 C 0.254 3.746 7 C -0.517 4.517 8 H 0.046 0.954 9 C 0.025 3.975 10 N -0.918 5.918 11 Si 0.940 3.060 12 H -0.267 1.267 13 H -0.272 1.272 14 H -0.294 1.294 15 C 0.506 3.494 16 O -0.557 6.557 17 C 0.488 3.512 18 O -0.475 6.475 19 N -0.642 5.642 20 C 0.140 3.860 21 C -0.095 4.095 22 C -0.060 4.060 23 C -0.110 4.110 24 C -0.073 4.073 25 C -0.024 4.024 26 C 0.277 3.723 27 N -0.465 5.465 28 C -0.100 4.100 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.023 0.977 37 H 0.044 0.956 38 H 0.260 0.740 39 H 0.432 0.568 40 H 0.169 0.831 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.159 0.841 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 16.332 -11.489 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.286 5.286 6 C 0.134 3.866 7 C -0.556 4.556 8 H 0.064 0.936 9 C -0.175 4.175 10 N -0.559 5.559 11 Si 0.767 3.233 12 H -0.191 1.191 13 H -0.197 1.197 14 H -0.221 1.221 15 C 0.288 3.712 16 O -0.438 6.438 17 C 0.270 3.730 18 O -0.345 6.345 19 N -0.293 5.293 20 C 0.046 3.954 21 C -0.116 4.116 22 C -0.061 4.061 23 C -0.167 4.167 24 C -0.094 4.094 25 C -0.028 4.028 26 C -0.038 4.038 27 N -0.141 5.141 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.272 0.728 40 H 0.186 0.814 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.177 0.823 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.602 14.285 -11.427 19.448 hybrid contribution 0.739 -0.215 0.823 1.127 sum -5.862 14.070 -10.604 18.568 Atomic orbital electron populations 1.22869 0.79858 1.03247 1.00816 1.88024 1.21307 1.28507 1.95533 1.22966 0.92899 0.84831 1.01650 1.21808 0.93555 1.00197 0.85765 1.48155 1.60144 1.09684 1.10660 1.19421 0.95573 0.73229 0.98361 1.21484 0.94235 0.91961 1.47879 0.93578 1.25442 1.00251 0.96574 0.95221 1.70031 1.34582 1.00683 1.50572 0.85781 0.81620 0.78442 0.77466 1.19113 1.19686 1.22122 1.19824 0.79449 0.86528 0.85383 1.90633 1.55349 1.13219 1.84640 1.20497 0.79474 0.87252 0.85800 1.90994 1.45401 1.14757 1.83351 1.43003 1.68543 1.11595 1.06110 1.17595 0.96709 0.95284 0.85812 1.21398 0.98784 1.02056 0.89314 1.19964 0.95918 0.94010 0.96227 1.20895 1.01861 1.01981 0.91930 1.21322 0.96071 0.95582 0.96387 1.15849 0.99994 0.91867 0.95091 1.25833 0.92686 0.92893 0.92380 1.80970 1.11873 1.12395 1.08861 1.21144 0.97288 0.96803 0.97040 0.93739 0.89699 0.92097 0.89168 0.93404 0.89569 0.87248 0.95933 0.93838 0.93075 0.72793 0.81366 0.89710 0.89349 0.89733 0.82295 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -14.09 9.69 -148.98 -1.44 -15.53 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.11 3.69 5.79 86.38 0.50 4.19 16 5 N -0.56 -23.54 2.44 -827.84 -2.02 -25.56 16 6 C 0.25 13.22 4.53 85.63 0.39 13.61 16 7 C -0.52 -29.16 8.09 25.60 0.21 -28.95 16 8 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.02 1.43 5.46 84.66 0.46 1.89 16 10 N -0.92 -56.36 13.29 21.45 0.28 -56.07 16 11 Si 0.94 46.90 29.54 68.60 2.03 48.93 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 13 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 15 C 0.51 20.07 7.66 87.24 0.67 20.74 16 16 O -0.56 -20.64 16.05 -3.28 -0.05 -20.69 16 17 C 0.49 19.11 7.57 87.24 0.66 19.77 16 18 O -0.47 -22.80 9.84 -3.34 -0.03 -22.83 16 19 N -0.64 -18.43 5.32 -304.94 -1.62 -20.05 16 20 C 0.14 3.70 6.25 38.17 0.24 3.94 16 21 C -0.09 -1.61 9.61 22.46 0.22 -1.39 16 22 C -0.06 -0.87 5.87 -19.92 -0.12 -0.98 16 23 C -0.11 -0.73 10.00 71.24 0.71 -0.01 16 24 C -0.07 -1.33 9.40 22.56 0.21 -1.12 16 25 C -0.02 -0.67 5.73 -21.38 -0.12 -0.79 16 26 C 0.28 9.26 15.31 88.40 1.35 10.61 16 27 N -0.47 -17.81 18.50 18.93 0.35 -17.46 16 28 C -0.10 -3.24 8.38 22.68 0.19 -3.05 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 3.03 8.07 -2.39 -0.02 3.01 16 35 H 0.11 3.29 7.40 -2.39 -0.02 3.27 16 36 H 0.02 1.27 7.30 -2.39 -0.02 1.25 16 37 H 0.04 2.52 5.57 -2.39 -0.01 2.50 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.43 9.70 8.30 -92.71 -0.77 8.93 16 40 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 0.34 8.08 -2.39 -0.02 0.32 16 43 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 44 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.11 4.51 6.40 -2.91 -0.02 4.49 16 Total: -1.00 -77.96 393.22 5.03 -72.94 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.27 Total: 13.95 kcal Atomic # 6 Polarization: 35.12 SS G_CDS: 7.27 Total: 42.39 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -3.01 Total: -119.14 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -1.53 Total: -59.05 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -77.96 5.03 -72.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590783813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.026 kcal (2) G-P(sol) polarization free energy of solvation -77.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds