Wall clock time and date at job start Wed Apr 1 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99904 * 2 1 4 4 H 1.08998 * 109.46989 * 329.34808 * 3 2 1 5 5 C 1.53005 * 109.47069 * 209.34988 * 3 2 1 6 6 S 1.81405 * 109.47108 * 65.00240 * 5 3 2 7 7 O 1.42099 * 110.54282 * 68.37080 * 6 5 3 8 8 O 1.42107 * 110.53972 * 291.62299 * 6 5 3 9 9 N 1.65597 * 104.45089 * 180.02562 * 6 5 3 10 10 C 1.39205 * 119.99863 * 64.99842 * 9 6 5 11 11 C 1.36169 * 126.22275 * 359.68518 * 10 9 6 12 12 C 1.39776 * 107.81079 * 180.26855 * 11 10 9 13 13 C 1.50709 * 125.83290 * 180.02562 * 12 11 10 14 14 N 1.30831 * 108.32468 * 359.97438 * 12 11 10 15 15 N 1.35256 * 126.21928 * 180.02562 * 10 9 6 16 16 C 1.46501 * 126.04041 * 359.70349 * 15 10 9 17 17 C 1.50707 * 109.46647 * 90.00723 * 16 15 10 18 18 H 1.07998 * 119.99876 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99511 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00450 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99476 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47477 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46971 * 119.99930 * 21 19 17 24 24 H 1.48507 * 109.47117 * 239.99780 * 21 19 17 25 25 C 1.52995 * 109.46923 * 89.35349 * 3 2 1 26 26 C 1.52997 * 109.47502 * 65.04632 * 25 3 2 27 27 C 1.53006 * 109.46983 * 185.04611 * 25 3 2 28 28 H 1.08996 * 109.47022 * 175.43008 * 1 2 3 29 29 H 1.09000 * 109.47265 * 295.42688 * 1 2 3 30 30 H 1.09005 * 109.47163 * 55.43189 * 1 2 3 31 31 H 1.09001 * 109.47052 * 305.00089 * 5 3 2 32 32 H 1.08997 * 109.47354 * 185.00082 * 5 3 2 33 33 H 0.96995 * 119.99810 * 244.99846 * 9 6 5 34 34 H 1.08001 * 126.09717 * 0.24696 * 11 10 9 35 35 H 1.09007 * 109.46630 * 269.94141 * 13 12 11 36 36 H 1.08995 * 109.47522 * 29.94683 * 13 12 11 37 37 H 1.09007 * 109.46906 * 149.95147 * 13 12 11 38 38 H 1.08996 * 109.47636 * 210.00680 * 16 15 10 39 39 H 1.09001 * 109.47105 * 330.01353 * 16 15 10 40 40 H 0.96999 * 119.99884 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47352 * 305.04411 * 25 3 2 42 42 H 1.09005 * 109.47284 * 186.51612 * 26 25 3 43 43 H 1.08992 * 109.47291 * 306.52041 * 26 25 3 44 44 H 1.09004 * 109.46783 * 66.51668 * 26 25 3 45 45 H 1.09004 * 109.47049 * 59.99958 * 27 25 3 46 46 H 1.09001 * 109.47016 * 179.97438 * 27 25 3 47 47 H 1.08997 * 109.46914 * 300.00068 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3503 1.9969 -0.5239 5 6 3.3663 1.2600 -0.7071 6 16 3.1228 0.8431 -2.4557 7 8 2.4698 1.9064 -3.1356 8 8 2.6734 -0.4983 -2.5906 9 7 4.6510 0.8272 -3.0934 10 6 5.5745 -0.1219 -2.6640 11 6 5.3603 -1.0868 -1.7274 12 6 6.5426 -1.8198 -1.5906 13 6 6.7548 -2.9863 -0.6603 14 7 7.4331 -1.3206 -2.4088 15 7 6.8496 -0.2491 -3.0966 16 6 7.5043 0.5855 -4.1072 17 6 8.1631 1.7631 -3.4359 18 1 8.1000 1.8784 -2.3640 19 6 8.8454 2.6937 -4.1906 20 7 8.9209 2.5540 -5.4961 21 14 9.6614 4.1537 -3.3587 22 1 9.4312 4.0809 -1.8935 23 1 11.1208 4.1270 -3.6319 24 1 9.0814 5.4136 -3.8894 25 6 2.2027 1.7779 1.4424 26 6 3.2261 0.8804 2.1408 27 6 2.7069 3.2225 1.4428 28 1 -0.3633 -1.0244 -0.0819 29 1 -0.3634 0.4412 0.9281 30 1 -0.3634 0.5831 -0.8463 31 1 3.9957 0.5040 -0.2375 32 1 3.8493 2.2340 -0.6296 33 1 4.9026 1.4791 -3.7660 34 1 4.4409 -1.2556 -1.1865 35 1 7.1211 -2.6232 0.3000 36 1 5.8107 -3.5111 -0.5143 37 1 7.4863 -3.6684 -1.0939 38 1 8.2579 -0.0023 -4.6313 39 1 6.7613 0.9427 -4.8202 40 1 9.4013 3.2085 -6.0269 41 1 1.2516 1.7250 1.9721 42 1 3.2781 1.1426 3.1976 43 1 2.9242 -0.1620 2.0395 44 1 4.2052 1.0212 1.6829 45 1 1.9778 3.8620 0.9452 46 1 2.8437 3.5593 2.4705 47 1 3.6580 3.2755 0.9131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592350838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:53 Heat of formation + Delta-G solvation = -76.051748 kcal Electronic energy + Delta-G solvation = -30019.334046 eV Core-core repulsion = 25944.111750 eV Total energy + Delta-G solvation = -4075.222296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20795 -40.01262 -38.40557 -37.24710 -36.51275 -36.12813 -35.72219 -33.83963 -31.51220 -30.71826 -29.55365 -28.11225 -27.82160 -27.39134 -25.36944 -24.73937 -22.39921 -21.41006 -20.65410 -20.27105 -18.91372 -18.68036 -18.46203 -17.94770 -17.78123 -16.78507 -16.54507 -16.27601 -16.15277 -16.00955 -15.84023 -15.14817 -14.70850 -14.52978 -14.42584 -14.24822 -14.05563 -13.86190 -13.79069 -13.66090 -13.43097 -13.39200 -13.21240 -13.06048 -13.03873 -12.95868 -12.73288 -12.70464 -12.52782 -12.37804 -12.28888 -12.24179 -11.85509 -11.71942 -11.68849 -11.59158 -11.35977 -10.77143 -10.54783 -9.71017 -9.20233 -8.36702 -6.54170 -1.05268 1.07117 1.16567 1.36266 1.38555 1.50385 1.86587 1.89581 2.32716 2.46165 2.62425 2.94459 3.05281 3.32124 3.58476 3.72337 3.78502 3.81864 4.01582 4.26624 4.35031 4.43216 4.47767 4.49994 4.52382 4.62924 4.74313 4.75010 4.83816 4.84592 4.87023 4.91112 4.96828 5.04336 5.09823 5.16143 5.22690 5.26963 5.42882 5.48125 5.49737 5.51855 5.75958 5.92170 6.08203 6.18734 6.58006 6.97829 7.17677 8.70825 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.004015 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.784687 B = 6971.613961 C = 7668.030147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.395 6.395 3 C 0.097 3.903 4 H 0.086 0.914 5 C -0.614 4.614 6 S 2.614 3.386 7 O -0.974 6.974 8 O -0.949 6.949 9 N -1.035 6.035 10 C 0.328 3.672 11 C -0.337 4.337 12 C 0.079 3.921 13 C -0.065 4.065 14 N -0.331 5.331 15 N -0.363 5.363 16 C 0.268 3.732 17 C -0.552 4.552 18 H 0.058 0.942 19 C 0.021 3.979 20 N -0.919 5.919 21 Si 0.972 3.028 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.099 4.099 26 C -0.152 4.152 27 C -0.160 4.160 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.429 0.571 34 H 0.171 0.829 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.041 0.959 40 H 0.273 0.727 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 -1.484 16.480 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.314 6.314 3 C 0.038 3.962 4 H 0.103 0.897 5 C -0.747 4.747 6 S 2.710 3.290 7 O -0.965 6.965 8 O -0.939 6.939 9 N -0.783 5.783 10 C 0.102 3.898 11 C -0.370 4.370 12 C -0.086 4.086 13 C -0.124 4.124 14 N -0.156 5.156 15 N -0.147 5.147 16 C 0.149 3.851 17 C -0.590 4.590 18 H 0.076 0.924 19 C -0.180 4.180 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.119 4.119 26 C -0.209 4.209 27 C -0.217 4.217 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.265 0.735 34 H 0.188 0.812 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.468 -1.844 15.304 21.837 hybrid contribution 0.319 1.589 -0.157 1.629 sum -15.150 -0.255 15.147 21.424 Atomic orbital electron populations 1.23157 0.79136 1.04483 1.01480 1.88014 1.21722 1.26519 1.95159 1.21981 0.90212 0.86067 0.97984 0.89655 1.30722 1.07861 1.15709 1.20371 1.05121 0.70998 0.74216 0.78619 1.93587 1.71704 1.57975 1.73197 1.93597 1.78103 1.36202 1.86010 1.53304 1.30230 1.40566 1.54168 1.17884 0.83783 0.92286 0.95828 1.21015 1.02964 1.03327 1.09738 1.22719 0.90601 0.98408 0.96922 1.20308 1.04185 0.91762 0.96101 1.77346 1.22582 1.02649 1.13034 1.49130 1.07223 1.25428 1.32945 1.19247 0.92954 0.88176 0.84751 1.21483 1.35639 1.07740 0.94179 0.92352 1.25789 0.95945 1.00921 0.95361 1.70020 1.42215 1.37405 1.06057 0.85288 0.78176 0.78232 0.78692 1.19143 1.20195 1.19434 1.21463 1.01195 0.96023 0.93205 1.21873 0.98527 0.99980 1.00494 1.22006 1.01655 0.94772 1.03283 0.88128 0.91343 0.93598 0.81917 0.81146 0.73469 0.81166 0.88927 0.88255 0.90799 0.95408 0.94123 0.91757 0.88744 0.91557 0.92068 0.92778 0.91585 0.90861 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.87 113.37 1.23 1.43 16 2 O -0.39 -8.19 9.11 -148.05 -1.35 -9.54 16 3 C 0.10 1.81 1.87 30.59 0.06 1.87 16 4 H 0.09 1.39 7.73 -2.39 -0.02 1.38 16 5 C -0.61 -13.41 4.73 71.98 0.34 -13.07 16 6 S 2.61 79.26 4.86 -56.49 -0.27 78.99 16 7 O -0.97 -32.96 18.08 -127.65 -2.31 -35.27 16 8 O -0.95 -33.22 15.87 -125.38 -1.99 -35.21 16 9 N -1.03 -36.95 5.77 -55.50 -0.32 -37.27 16 10 C 0.33 13.29 7.49 131.42 0.98 14.28 16 11 C -0.34 -12.05 8.55 22.16 0.19 -11.87 16 12 C 0.08 2.89 7.21 43.08 0.31 3.20 16 13 C -0.07 -1.60 10.44 71.24 0.74 -0.85 16 14 N -0.33 -15.00 12.56 -47.44 -0.60 -15.60 16 15 N -0.36 -17.13 3.60 -348.90 -1.26 -18.38 16 16 C 0.27 14.05 6.00 85.64 0.51 14.57 16 17 C -0.55 -30.00 9.39 25.60 0.24 -29.76 16 18 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 19 C 0.02 1.12 5.46 84.66 0.46 1.58 16 20 N -0.92 -51.50 13.29 21.45 0.28 -51.21 16 21 Si 0.97 41.87 29.54 68.60 2.03 43.89 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 C -0.10 -1.42 2.89 -10.79 -0.03 -1.45 16 26 C -0.15 -2.33 8.45 71.98 0.61 -1.73 16 27 C -0.16 -2.10 8.95 71.98 0.64 -1.46 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 0.68 7.81 -2.39 -0.02 0.66 16 30 H 0.05 0.66 7.98 -2.38 -0.02 0.64 16 31 H 0.16 3.46 4.96 -2.39 -0.01 3.45 16 32 H 0.17 3.04 6.35 -2.39 -0.02 3.03 16 33 H 0.43 15.55 8.06 -96.75 -0.78 14.77 16 34 H 0.17 5.16 5.97 -2.91 -0.02 5.15 16 35 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 2.14 7.50 -2.39 -0.02 2.12 16 40 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.09 1.08 7.81 -2.39 -0.02 1.06 16 42 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 44 H 0.05 0.91 6.86 -2.38 -0.02 0.89 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.06 0.82 6.46 -2.39 -0.02 0.81 16 Total: -1.00 -73.02 392.70 0.72 -72.31 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.21 Total: 30.56 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 6.30 Total: -23.26 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -1.89 Total: -122.46 kcal Atomic # 8 Polarization: -74.38 SS G_CDS: -5.65 Total: -80.02 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 79.26 SS G_CDS: -0.27 Total: 78.99 kcal Total: -73.02 0.72 -72.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592350838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.745 kcal (2) G-P(sol) polarization free energy of solvation -73.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds