Wall clock time and date at job start Wed Apr 1 2020 03:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.44024 * 2 1 4 4 O 1.21282 * 120.00308 * 100.15815 * 3 2 1 5 5 N 1.34777 * 119.99655 * 280.16372 * 3 2 1 6 6 C 1.46970 * 120.59326 * 184.86651 * 5 3 2 7 7 C 1.53372 * 108.63486 * 235.24606 * 6 5 3 8 8 N 1.46966 * 108.63292 * 310.57544 * 7 6 5 9 9 C 1.36938 * 120.59237 * 235.20423 * 8 7 6 10 10 H 1.07998 * 119.99728 * 153.31631 * 9 8 7 11 11 C 1.38812 * 119.99594 * 333.32025 * 9 8 7 12 12 N 1.31619 * 120.00540 * 342.60325 * 11 9 8 13 13 Si 1.86808 * 119.99627 * 162.87742 * 11 9 8 14 14 H 1.48503 * 109.46670 * 60.00091 * 13 11 9 15 15 H 1.48498 * 109.47180 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47322 * 300.00072 * 13 11 9 17 17 C 1.46967 * 118.81304 * 55.47802 * 8 7 6 18 18 C 1.46964 * 120.59716 * 4.87934 * 5 3 2 19 19 O 1.42924 * 109.44052 * 240.07698 * 2 1 3 20 20 C 1.36008 * 117.00214 * 285.37797 * 19 2 1 21 21 C 1.38443 * 120.44429 * 148.03890 * 20 19 2 22 22 C 1.38299 * 119.90254 * 179.31887 * 21 20 19 23 23 C 1.38284 * 120.23479 * 359.96078 * 22 21 20 24 24 C 1.38263 * 120.19091 * 0.30520 * 23 22 21 25 25 C 1.38574 * 119.84389 * 0.02562 * 24 23 22 26 26 N 1.40157 * 120.53591 * 178.46301 * 25 24 23 27 27 C 1.34916 * 119.18930 * 191.75554 * 26 25 24 28 28 O 1.21294 * 120.10536 * 186.06209 * 27 26 25 29 29 H 1.08999 * 109.46389 * 60.00069 * 1 2 3 30 30 H 1.08994 * 109.47251 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46979 * 300.00696 * 1 2 3 32 32 H 1.08993 * 109.61084 * 115.49664 * 6 5 3 33 33 H 1.09002 * 109.74754 * 355.07233 * 6 5 3 34 34 H 1.08995 * 109.60883 * 190.83190 * 7 6 5 35 35 H 1.08999 * 109.74864 * 70.40201 * 7 6 5 36 36 H 0.96995 * 120.00146 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.60839 * 64.26478 * 17 8 7 38 38 H 1.08995 * 109.60950 * 184.78017 * 17 8 7 39 39 H 1.08994 * 109.61088 * 244.50136 * 18 5 3 40 40 H 1.09005 * 109.60721 * 4.84679 * 18 5 3 41 41 H 1.08006 * 120.04746 * 359.29174 * 21 20 19 42 42 H 1.07997 * 119.88303 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.89643 * 180.33078 * 23 22 21 44 44 H 1.07997 * 120.07738 * 180.02562 * 24 23 22 45 45 H 0.97000 * 120.39795 * 11.80721 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0316 1.4211 0.0000 4 8 2.4081 1.9313 1.0338 5 7 2.0616 2.1250 -1.1489 6 6 2.6461 3.4730 -1.1852 7 6 1.6010 4.4454 -1.7458 8 7 1.0495 3.8790 -2.9847 9 6 1.0793 4.5946 -4.1519 10 1 1.0912 4.0794 -5.1010 11 6 1.0942 5.9821 -4.1150 12 7 0.7400 6.6152 -3.0168 13 14 1.6097 6.9511 -5.6267 14 1 0.6973 6.6319 -6.7540 15 1 1.5401 8.4046 -5.3305 16 1 3.0008 6.5870 -5.9974 17 6 0.4600 2.5333 -2.9473 18 6 1.5102 1.5586 -2.3879 19 8 2.0057 -0.6723 -1.1681 20 6 1.9082 -2.0288 -1.1826 21 6 1.6987 -2.7044 -2.3727 22 6 1.6154 -4.0848 -2.3765 23 6 1.7414 -4.7932 -1.1956 24 6 1.9453 -4.1252 -0.0024 25 6 2.0228 -2.7417 0.0088 26 7 2.1971 -2.0479 1.2141 27 6 2.0311 -0.7091 1.2327 28 8 2.2840 -0.0786 2.2375 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.5270 3.4726 -1.8271 33 1 2.9277 3.7795 -0.1778 34 1 2.0718 5.4048 -1.9601 35 1 0.8005 4.5849 -1.0193 36 1 0.7502 7.5848 -2.9912 37 1 -0.4194 2.5369 -2.3032 38 1 0.1771 2.2296 -3.9551 39 1 2.3103 1.4220 -3.1154 40 1 1.0420 0.5977 -2.1741 41 1 1.6001 -2.1540 -3.2968 42 1 1.4516 -4.6115 -3.3050 43 1 1.6808 -5.8715 -1.2056 44 1 2.0439 -4.6803 0.9187 45 1 2.4348 -2.5245 2.0248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601206126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:44 Heat of formation + Delta-G solvation = -19.945890 kcal Electronic energy + Delta-G solvation = -31697.101948 eV Core-core repulsion = 27488.868633 eV Total energy + Delta-G solvation = -4208.233315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.11462 -39.74272 -38.87683 -37.74565 -36.76636 -35.30068 -33.92933 -32.48640 -31.19496 -30.63848 -30.10530 -29.28468 -27.11899 -25.46561 -24.24312 -23.57111 -23.19581 -22.71997 -21.26739 -19.74012 -19.44252 -18.66185 -18.05699 -17.00130 -16.58899 -16.32788 -16.07442 -15.87379 -15.30719 -14.93431 -14.83328 -14.75893 -14.59124 -14.22008 -13.87213 -13.68632 -13.55283 -13.37460 -13.26880 -13.10274 -12.71666 -12.49028 -12.30315 -12.25846 -11.88787 -11.67229 -11.37994 -11.21341 -11.05858 -10.78431 -10.71760 -10.54973 -10.25466 -10.22858 -9.93866 -9.86011 -9.36351 -9.00128 -8.59434 -8.26767 -8.20672 -6.73435 -5.84315 -3.28936 0.77793 0.92561 2.03329 2.39980 2.56728 3.06273 3.28843 3.35509 3.42074 3.42424 3.44989 3.73829 4.27087 4.39221 4.46819 4.49176 4.61424 4.88530 4.95213 5.04921 5.23452 5.27163 5.32263 5.35882 5.44263 5.66063 5.71572 5.76911 5.82619 5.84088 6.00912 6.10851 6.11999 6.25392 6.31913 6.35990 6.39300 6.48170 6.54058 6.68665 6.84846 7.00603 7.24288 7.56197 7.63381 7.71183 7.79207 8.35415 8.38586 9.11718 9.74849 10.30535 11.22756 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.003226 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.978276 B = 8677.904600 C = 9825.280418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 C 0.528 3.472 4 O -0.506 6.506 5 N -0.578 5.578 6 C 0.087 3.913 7 C 0.157 3.843 8 N -0.591 5.591 9 C -0.257 4.257 10 H 0.068 0.932 11 C 0.003 3.997 12 N -0.902 5.902 13 Si 0.905 3.095 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.130 3.870 18 C 0.083 3.917 19 O -0.282 6.282 20 C 0.075 3.925 21 C -0.103 4.103 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.129 4.129 25 C 0.098 3.902 26 N -0.663 5.663 27 C 0.502 3.498 28 O -0.457 6.457 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.024 0.976 36 H 0.256 0.744 37 H 0.022 0.978 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -23.921 3.011 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.047 3.953 3 C 0.311 3.689 4 O -0.381 6.381 5 N -0.310 5.310 6 C -0.036 4.036 7 C 0.030 3.970 8 N -0.314 5.314 9 C -0.386 4.386 10 H 0.086 0.914 11 C -0.196 4.196 12 N -0.546 5.546 13 Si 0.735 3.265 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.002 3.998 18 C -0.041 4.041 19 O -0.197 6.197 20 C 0.028 3.972 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.150 4.150 25 C 0.002 3.998 26 N -0.311 5.311 27 C 0.286 3.714 28 O -0.326 6.326 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.573 -22.732 3.917 23.075 hybrid contribution 0.281 0.096 -0.277 0.406 sum 0.854 -22.636 3.640 22.943 Atomic orbital electron populations 1.22417 0.89928 1.04397 1.06097 1.22174 0.97682 0.92482 0.83002 1.19159 0.80015 0.85037 0.84731 1.90829 1.47157 1.69196 1.30930 1.47964 1.57626 1.17205 1.08220 1.22614 0.97949 0.81224 1.01827 1.21247 0.93183 0.95735 0.86788 1.44026 1.66757 1.13481 1.07113 1.19167 1.45871 0.88279 0.85280 0.91397 1.25047 1.00230 0.97060 0.97262 1.69996 1.49318 1.07805 1.27472 0.86333 0.78818 0.78948 0.82435 1.20860 1.21612 1.20943 1.21420 0.92730 0.86778 0.98838 1.22790 0.98414 0.97294 0.85582 1.86530 1.79423 1.15709 1.38044 1.18700 1.02836 0.82702 0.92964 1.20622 1.00806 0.94226 0.96499 1.21009 1.00656 0.92946 0.98661 1.20962 1.00208 1.00144 0.91706 1.20619 1.03894 0.90891 0.99584 1.18109 1.03901 0.92527 0.85228 1.43718 1.69347 1.07421 1.10656 1.20649 0.78455 0.81895 0.90387 1.90908 1.44833 1.63973 1.32877 0.88469 0.90547 0.89334 0.91761 0.90021 0.87725 0.95787 0.93365 0.96004 0.91387 0.91353 0.89209 0.83993 0.84855 0.85192 0.85100 0.74502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 8.31 37.16 0.31 -1.82 16 2 C 0.09 1.38 0.66 -92.88 -0.06 1.32 16 3 C 0.53 10.03 6.64 -10.99 -0.07 9.96 16 4 O -0.51 -11.36 14.01 -18.15 -0.25 -11.62 16 5 N -0.58 -10.91 2.95 -172.21 -0.51 -11.41 16 6 C 0.09 1.79 6.59 -3.59 -0.02 1.76 16 7 C 0.16 3.73 5.53 -3.60 -0.02 3.71 16 8 N -0.59 -14.24 2.97 -171.76 -0.51 -14.75 16 9 C -0.26 -6.74 9.60 -15.06 -0.14 -6.89 16 10 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 11 C 0.00 0.07 4.93 -17.43 -0.09 -0.01 16 12 N -0.90 -25.58 11.08 55.49 0.61 -24.97 16 13 Si 0.91 21.10 29.59 -169.99 -5.03 16.07 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.13 2.52 6.70 -3.36 -0.02 2.50 16 18 C 0.08 1.39 5.29 -3.36 -0.02 1.37 16 19 O -0.28 -3.82 6.72 -19.77 -0.13 -3.95 16 20 C 0.07 0.83 5.91 -39.11 -0.23 0.60 16 21 C -0.10 -0.89 9.99 -39.48 -0.39 -1.28 16 22 C -0.11 -0.76 10.04 -39.54 -0.40 -1.15 16 23 C -0.11 -0.69 10.04 -39.56 -0.40 -1.09 16 24 C -0.13 -0.94 9.94 -39.45 -0.39 -1.34 16 25 C 0.10 1.00 6.57 -83.53 -0.55 0.45 16 26 N -0.66 -7.47 5.46 -9.71 -0.05 -7.52 16 27 C 0.50 7.71 6.89 -10.88 -0.07 7.64 16 28 O -0.46 -8.73 15.52 -18.16 -0.28 -9.01 16 29 H 0.10 1.18 6.53 -51.93 -0.34 0.84 16 30 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.69 7.00 -51.93 -0.36 1.33 16 34 H 0.10 2.75 5.86 -51.93 -0.30 2.44 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.26 3.65 -51.93 -0.19 1.07 16 41 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.42 3.66 8.87 -40.82 -0.36 3.30 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -33.85 360.06 -9.04 -42.89 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.73 Total: 3.14 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -2.58 Total: 15.72 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.46 Total: -58.66 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.67 Total: -24.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.85 -9.04 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.941 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds