Wall clock time and date at job start Wed Apr 1 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.44024 * 2 1 4 4 O 1.21282 * 120.00308 * 100.15815 * 3 2 1 5 5 N 1.34777 * 119.99655 * 280.16372 * 3 2 1 6 6 C 1.46970 * 120.59326 * 184.86651 * 5 3 2 7 7 C 1.53372 * 108.63486 * 235.24606 * 6 5 3 8 8 N 1.46966 * 108.63292 * 310.57544 * 7 6 5 9 9 C 1.36938 * 120.59237 * 235.20423 * 8 7 6 10 10 H 1.07998 * 119.99728 * 153.31631 * 9 8 7 11 11 C 1.38812 * 119.99594 * 333.32025 * 9 8 7 12 12 N 1.31619 * 120.00540 * 342.60325 * 11 9 8 13 13 Si 1.86808 * 119.99627 * 162.87742 * 11 9 8 14 14 H 1.48503 * 109.46670 * 60.00091 * 13 11 9 15 15 H 1.48498 * 109.47180 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47322 * 300.00072 * 13 11 9 17 17 C 1.46967 * 118.81304 * 55.47802 * 8 7 6 18 18 C 1.46964 * 120.59716 * 4.87934 * 5 3 2 19 19 O 1.42924 * 109.44052 * 240.07698 * 2 1 3 20 20 C 1.36008 * 117.00214 * 285.37797 * 19 2 1 21 21 C 1.38443 * 120.44429 * 148.03890 * 20 19 2 22 22 C 1.38299 * 119.90254 * 179.31887 * 21 20 19 23 23 C 1.38284 * 120.23479 * 359.96078 * 22 21 20 24 24 C 1.38263 * 120.19091 * 0.30520 * 23 22 21 25 25 C 1.38574 * 119.84389 * 0.02562 * 24 23 22 26 26 N 1.40157 * 120.53591 * 178.46301 * 25 24 23 27 27 C 1.34916 * 119.18930 * 191.75554 * 26 25 24 28 28 O 1.21294 * 120.10536 * 186.06209 * 27 26 25 29 29 H 1.08999 * 109.46389 * 60.00069 * 1 2 3 30 30 H 1.08994 * 109.47251 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46979 * 300.00696 * 1 2 3 32 32 H 1.08993 * 109.61084 * 115.49664 * 6 5 3 33 33 H 1.09002 * 109.74754 * 355.07233 * 6 5 3 34 34 H 1.08995 * 109.60883 * 190.83190 * 7 6 5 35 35 H 1.08999 * 109.74864 * 70.40201 * 7 6 5 36 36 H 0.96995 * 120.00146 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.60839 * 64.26478 * 17 8 7 38 38 H 1.08995 * 109.60950 * 184.78017 * 17 8 7 39 39 H 1.08994 * 109.61088 * 244.50136 * 18 5 3 40 40 H 1.09005 * 109.60721 * 4.84679 * 18 5 3 41 41 H 1.08006 * 120.04746 * 359.29174 * 21 20 19 42 42 H 1.07997 * 119.88303 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.89643 * 180.33078 * 23 22 21 44 44 H 1.07997 * 120.07738 * 180.02562 * 24 23 22 45 45 H 0.97000 * 120.39795 * 11.80721 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0316 1.4211 0.0000 4 8 2.4081 1.9313 1.0338 5 7 2.0616 2.1250 -1.1489 6 6 2.6461 3.4730 -1.1852 7 6 1.6010 4.4454 -1.7458 8 7 1.0495 3.8790 -2.9847 9 6 1.0793 4.5946 -4.1519 10 1 1.0912 4.0794 -5.1010 11 6 1.0942 5.9821 -4.1150 12 7 0.7400 6.6152 -3.0168 13 14 1.6097 6.9511 -5.6267 14 1 0.6973 6.6319 -6.7540 15 1 1.5401 8.4046 -5.3305 16 1 3.0008 6.5870 -5.9974 17 6 0.4600 2.5333 -2.9473 18 6 1.5102 1.5586 -2.3879 19 8 2.0057 -0.6723 -1.1681 20 6 1.9082 -2.0288 -1.1826 21 6 1.6987 -2.7044 -2.3727 22 6 1.6154 -4.0848 -2.3765 23 6 1.7414 -4.7932 -1.1956 24 6 1.9453 -4.1252 -0.0024 25 6 2.0228 -2.7417 0.0088 26 7 2.1971 -2.0479 1.2141 27 6 2.0311 -0.7091 1.2327 28 8 2.2840 -0.0786 2.2375 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.5270 3.4726 -1.8271 33 1 2.9277 3.7795 -0.1778 34 1 2.0718 5.4048 -1.9601 35 1 0.8005 4.5849 -1.0193 36 1 0.7502 7.5848 -2.9912 37 1 -0.4194 2.5369 -2.3032 38 1 0.1771 2.2296 -3.9551 39 1 2.3103 1.4220 -3.1154 40 1 1.0420 0.5977 -2.1741 41 1 1.6001 -2.1540 -3.2968 42 1 1.4516 -4.6115 -3.3050 43 1 1.6808 -5.8715 -1.2056 44 1 2.0439 -4.6803 0.9187 45 1 2.4348 -2.5245 2.0248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601206126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:42 Heat of formation + Delta-G solvation = -42.018856 kcal Electronic energy + Delta-G solvation = -31698.059104 eV Core-core repulsion = 27488.868633 eV Total energy + Delta-G solvation = -4209.190470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.14598 -40.99641 -40.02224 -38.67796 -38.42187 -36.21831 -35.68642 -33.64758 -33.04251 -31.75876 -31.29497 -30.01733 -28.85235 -26.69464 -25.56026 -25.06289 -24.27547 -23.78387 -22.71136 -21.11358 -20.42379 -19.91344 -19.14358 -18.46431 -17.81146 -17.47337 -17.29055 -17.06447 -16.70399 -16.48531 -16.10754 -15.81511 -15.57352 -15.43117 -15.28637 -15.11800 -15.06055 -14.80065 -14.44292 -14.15905 -13.95415 -13.73718 -13.59424 -13.23591 -13.08672 -12.98511 -12.69956 -12.57812 -12.49771 -12.28555 -12.13088 -12.02358 -11.89643 -11.82046 -11.66127 -11.39524 -10.78775 -10.58654 -9.92836 -9.63615 -8.98153 -8.68258 -7.86759 -5.34612 0.02058 0.32274 0.96395 1.27978 1.39325 1.50144 1.53132 1.59382 1.79302 2.16354 2.52703 2.66968 2.81037 3.13078 3.27826 3.40043 3.58488 3.62559 4.06727 4.17896 4.21563 4.24622 4.27542 4.37567 4.40204 4.43661 4.53293 4.58196 4.61700 4.73452 4.75167 4.82040 4.91346 5.05473 5.07745 5.24110 5.26128 5.40815 5.50056 5.58996 5.59833 5.66154 5.67091 5.72358 6.18498 6.29510 6.35537 6.63080 6.89064 7.09766 7.79722 8.32542 9.18440 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.003226 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.978276 B = 8677.904600 C = 9825.280418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 C 0.522 3.478 4 O -0.548 6.548 5 N -0.582 5.582 6 C 0.100 3.900 7 C 0.170 3.830 8 N -0.608 5.608 9 C -0.261 4.261 10 H 0.079 0.921 11 C -0.052 4.052 12 N -0.938 5.938 13 Si 0.970 3.030 14 H -0.272 1.272 15 H -0.299 1.299 16 H -0.277 1.277 17 C 0.126 3.874 18 C 0.096 3.904 19 O -0.292 6.292 20 C 0.044 3.956 21 C -0.107 4.107 22 C -0.104 4.104 23 C -0.103 4.103 24 C -0.121 4.121 25 C 0.074 3.926 26 N -0.647 5.647 27 C 0.499 3.501 28 O -0.510 6.510 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H -0.006 1.006 36 H 0.250 0.750 37 H 0.019 0.981 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -28.321 0.918 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 C 0.307 3.693 4 O -0.426 6.426 5 N -0.313 5.313 6 C -0.024 4.024 7 C 0.043 3.957 8 N -0.331 5.331 9 C -0.391 4.391 10 H 0.097 0.903 11 C -0.247 4.247 12 N -0.584 5.584 13 Si 0.798 3.202 14 H -0.198 1.198 15 H -0.226 1.226 16 H -0.203 1.203 17 C 0.000 4.000 18 C -0.026 4.026 19 O -0.207 6.207 20 C -0.002 4.002 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.141 4.141 25 C -0.021 4.021 26 N -0.295 5.295 27 C 0.284 3.716 28 O -0.383 6.383 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.012 0.988 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.169 0.831 42 H 0.181 0.819 43 H 0.181 0.819 44 H 0.173 0.827 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 0.313 -27.246 1.769 27.305 hybrid contribution 0.337 1.209 0.301 1.291 sum 0.650 -26.037 2.070 26.128 Atomic orbital electron populations 1.22415 0.88075 1.06045 1.05739 1.21807 0.98767 0.90040 0.83961 1.19823 0.78979 0.86713 0.83781 1.90800 1.48755 1.70687 1.32323 1.48031 1.57619 1.16465 1.09219 1.22246 0.97056 0.81930 1.01161 1.20909 0.92742 0.95579 0.86465 1.44270 1.67474 1.14940 1.06437 1.19574 1.44498 0.88709 0.86337 0.90336 1.25821 1.00875 0.98156 0.99860 1.70165 1.51157 1.07467 1.29592 0.85302 0.78619 0.76850 0.79420 1.19800 1.22589 1.20347 1.21625 0.93261 0.84988 1.00104 1.22779 0.97775 0.97552 0.84540 1.86443 1.79974 1.17556 1.36738 1.19055 1.05259 0.81433 0.94422 1.20878 1.00512 0.95257 0.95922 1.21432 0.98565 0.92081 1.00195 1.21426 0.98015 1.01835 0.90857 1.20981 1.02163 0.89617 1.01337 1.18349 1.05970 0.93611 0.84192 1.43516 1.68008 1.06097 1.11874 1.20724 0.78116 0.83082 0.89720 1.90882 1.47569 1.65393 1.34450 0.88115 0.87841 0.90357 0.91131 0.90799 0.90541 0.98766 0.94071 0.96258 0.89614 0.90779 0.86075 0.83114 0.81912 0.81879 0.82665 0.73226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.31 71.98 0.60 -3.37 16 2 C 0.10 2.97 0.66 -12.26 -0.01 2.96 16 3 C 0.52 20.37 6.64 87.66 0.58 20.95 16 4 O -0.55 -25.89 14.01 19.63 0.27 -25.62 16 5 N -0.58 -22.26 2.95 -817.14 -2.41 -24.66 16 6 C 0.10 4.28 6.59 86.41 0.57 4.85 16 7 C 0.17 8.48 5.53 86.42 0.48 8.96 16 8 N -0.61 -29.64 2.97 -697.34 -2.07 -31.71 16 9 C -0.26 -13.74 9.60 84.03 0.81 -12.93 16 10 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 11 C -0.05 -2.83 4.93 84.86 0.42 -2.42 16 12 N -0.94 -55.11 11.08 21.65 0.24 -54.87 16 13 Si 0.97 43.79 29.59 68.60 2.03 45.82 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 C 0.13 4.80 6.70 86.57 0.58 5.38 16 18 C 0.10 3.09 5.29 86.57 0.46 3.55 16 19 O -0.29 -7.45 6.72 -93.64 -0.63 -8.07 16 20 C 0.04 0.86 5.91 22.58 0.13 0.99 16 21 C -0.11 -1.46 9.99 22.33 0.22 -1.24 16 22 C -0.10 -0.85 10.04 22.30 0.22 -0.63 16 23 C -0.10 -0.72 10.04 22.29 0.22 -0.50 16 24 C -0.12 -1.25 9.94 22.36 0.22 -1.03 16 25 C 0.07 1.30 6.57 38.15 0.25 1.55 16 26 N -0.65 -13.79 5.46 -302.95 -1.65 -15.45 16 27 C 0.50 15.43 6.89 87.66 0.60 16.04 16 28 O -0.51 -20.31 15.52 19.59 0.30 -20.01 16 29 H 0.10 2.31 6.53 -2.39 -0.02 2.29 16 30 H 0.10 1.90 7.85 -2.39 -0.02 1.88 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.07 3.26 7.00 -2.39 -0.02 3.25 16 34 H 0.08 4.25 5.86 -2.39 -0.01 4.24 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 2.94 7.93 -2.39 -0.02 2.92 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.12 3.16 3.65 -2.38 -0.01 3.15 16 41 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 43 H 0.16 0.15 8.06 -2.91 -0.02 0.12 16 44 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 45 H 0.43 6.99 8.87 -92.71 -0.82 6.16 16 Total: -1.00 -77.75 360.06 2.67 -75.07 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.22 Total: 16.38 kcal Atomic # 6 Polarization: 36.76 SS G_CDS: 6.36 Total: 43.12 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -5.89 Total: -126.69 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.05 Total: -53.70 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -77.75 2.67 -75.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.055 kcal (2) G-P(sol) polarization free energy of solvation -77.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds