Wall clock time and date at job start Wed Apr 1 2020 04:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31131 * 126.54772 * 2 1 4 4 C 1.34496 * 105.61318 * 180.12142 * 3 2 1 5 5 C 1.50701 * 126.29151 * 179.90170 * 4 3 2 6 6 O 1.42897 * 109.47090 * 269.71064 * 5 4 3 7 7 C 1.35709 * 117.00079 * 179.97438 * 6 5 4 8 8 C 1.38995 * 119.91502 * 180.02562 * 7 6 5 9 9 C 1.37699 * 120.09385 * 180.29930 * 8 7 6 10 10 C 1.39739 * 119.90355 * 359.44514 * 9 8 7 11 11 C 1.47608 * 120.08538 * 180.27448 * 10 9 8 12 12 O 1.21586 * 119.99734 * 320.89647 * 11 10 9 13 13 N 1.34773 * 119.99746 * 140.90065 * 11 10 9 14 14 C 1.46502 * 120.00382 * 4.87158 * 13 11 10 15 15 C 1.46502 * 119.99790 * 184.87359 * 13 11 10 16 16 H 1.09001 * 109.47318 * 0.02562 * 15 13 11 17 17 C 1.52995 * 109.47402 * 239.99931 * 15 13 11 18 18 C 1.50707 * 109.47095 * 119.99541 * 15 13 11 19 19 H 1.08002 * 119.99653 * 0.02562 * 18 15 13 20 20 C 1.37872 * 119.99985 * 179.97438 * 18 15 13 21 21 N 1.31510 * 120.00325 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99905 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.46999 * 60.00286 * 22 20 18 24 24 H 1.48503 * 109.47226 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47115 * 300.00535 * 22 20 18 26 26 C 1.39732 * 119.82687 * 0.55228 * 10 9 8 27 27 C 1.37705 * 119.91253 * 359.72342 * 26 10 9 28 28 N 1.29956 * 107.42275 * 359.63507 * 4 3 2 29 29 O 1.21298 * 110.25145 * 0.23149 * 28 4 3 30 30 H 1.09000 * 109.47121 * 180.25366 * 1 2 3 31 31 H 1.08996 * 109.47047 * 300.25612 * 1 2 3 32 32 H 1.09003 * 109.46645 * 60.25616 * 1 2 3 33 33 H 1.08996 * 109.47216 * 149.71205 * 5 4 3 34 34 H 1.09000 * 109.46468 * 29.71008 * 5 4 3 35 35 H 1.08009 * 119.95477 * 0.02562 * 8 7 6 36 36 H 1.07994 * 120.04985 * 179.70224 * 9 8 7 37 37 H 1.08999 * 109.46521 * 85.69732 * 14 13 11 38 38 H 1.08996 * 109.47357 * 205.69282 * 14 13 11 39 39 H 1.08999 * 109.47029 * 325.70036 * 14 13 11 40 40 H 1.08999 * 109.47296 * 299.99811 * 17 15 13 41 41 H 1.08994 * 109.46956 * 60.00272 * 17 15 13 42 42 H 1.09000 * 109.47043 * 179.97438 * 17 15 13 43 43 H 0.97003 * 120.00278 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.04581 * 179.70389 * 26 10 9 45 45 H 1.07992 * 119.95604 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0027 5 6 4.8112 1.3887 -0.0060 6 8 5.2123 1.6403 -1.3542 7 6 6.3433 2.3683 -1.5349 8 6 6.7886 2.6494 -2.8212 9 6 7.9390 3.3825 -3.0088 10 6 8.6527 3.8537 -1.9038 11 6 9.8832 4.6451 -2.1003 12 8 10.6621 4.3481 -2.9854 13 7 10.1432 5.6967 -1.2985 14 6 9.2613 5.9904 -0.1662 15 6 11.3079 6.5462 -1.5594 16 1 11.8392 6.1754 -2.4359 17 6 12.2411 6.5187 -0.3472 18 6 10.8520 7.9606 -1.8103 19 1 9.7999 8.2025 -1.7782 20 6 11.7780 8.9459 -2.0797 21 7 13.0591 8.6515 -2.1183 22 14 11.2128 10.6991 -2.3901 23 1 10.4885 11.2043 -1.1961 24 1 12.3934 11.5603 -2.6546 25 1 10.3072 10.7263 -3.5666 26 6 8.2018 3.5690 -0.6122 27 6 7.0534 2.8305 -0.4331 28 7 3.4645 -0.7242 0.0037 29 8 2.3029 -1.0736 0.0053 30 1 -0.3633 -1.0276 0.0045 31 1 -0.3633 0.5178 0.8876 32 1 -0.3633 0.5099 -0.8923 33 1 5.5982 0.8395 0.5107 34 1 4.6346 2.3360 0.5035 35 1 6.2338 2.2886 -3.6749 36 1 8.2870 3.5964 -4.0086 37 1 9.5712 5.4023 0.6977 38 1 9.3218 7.0514 0.0759 39 1 8.2347 5.7357 -0.4297 40 1 11.7096 6.8899 0.5290 41 1 12.5709 5.4958 -0.1659 42 1 13.1078 7.1504 -0.5415 43 1 13.7106 9.3446 -2.3082 44 1 8.7533 3.9275 0.2444 45 1 6.7045 2.6096 0.5648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:24 Heat of formation + Delta-G solvation = 40.387808 kcal Electronic energy + Delta-G solvation = -28831.241057 eV Core-core repulsion = 24625.624008 eV Total energy + Delta-G solvation = -4205.617049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.14590 -40.52991 -39.24558 -37.24319 -36.30954 -35.36159 -34.19164 -32.97438 -31.30502 -30.56079 -29.66240 -29.13183 -28.21958 -26.29711 -25.22307 -24.30405 -23.37903 -22.97205 -21.82757 -20.88398 -18.99030 -18.81893 -18.18174 -18.05994 -16.89590 -16.51511 -16.27848 -16.11723 -15.47178 -15.22147 -14.83800 -14.55776 -14.46078 -14.16920 -14.04455 -13.75032 -13.55351 -13.34162 -12.93203 -12.90622 -12.60595 -12.52123 -12.33768 -12.22425 -12.08072 -11.73057 -11.58275 -11.47097 -11.20613 -11.06867 -10.86109 -10.80959 -10.66927 -10.45712 -10.26656 -10.17044 -9.22297 -9.06361 -9.03902 -8.43625 -8.26301 -7.60428 -6.07530 -4.15838 0.59054 1.10062 1.30686 1.47392 2.28618 2.69293 3.25449 3.27984 3.29141 3.33199 3.35505 3.53160 3.80540 4.07909 4.28310 4.39539 4.48979 4.59713 4.69518 4.73962 4.75267 4.86759 4.99635 5.05223 5.23563 5.25529 5.25852 5.35116 5.42943 5.56374 5.75118 5.86986 6.00396 6.08841 6.18484 6.36449 6.47616 6.57796 6.75930 6.83947 7.06128 7.10368 7.41623 7.52899 7.61904 7.70967 8.01283 8.18741 8.50331 8.81621 9.02478 9.50568 10.97711 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.001859 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.795842 B =15055.530527 C =15458.214344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.180 3.820 3 N -0.470 5.470 4 C 0.169 3.831 5 C 0.155 3.845 6 O -0.309 6.309 7 C 0.139 3.861 8 C -0.154 4.154 9 C -0.028 4.028 10 C -0.148 4.148 11 C 0.547 3.453 12 O -0.549 6.549 13 N -0.585 5.585 14 C 0.078 3.922 15 C 0.257 3.743 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.054 4.054 27 C -0.216 4.216 28 N -0.360 5.360 29 O 0.087 5.913 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.011 0.989 42 H 0.094 0.906 43 H 0.264 0.736 44 H 0.141 0.859 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.436 -16.707 8.003 30.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 N -0.204 5.204 4 C -0.103 4.103 5 C 0.078 3.922 6 O -0.222 6.222 7 C 0.094 3.906 8 C -0.172 4.172 9 C -0.047 4.047 10 C -0.151 4.151 11 C 0.334 3.666 12 O -0.428 6.428 13 N -0.315 5.315 14 C -0.066 4.066 15 C 0.157 3.843 16 H 0.082 0.918 17 C -0.204 4.204 18 C -0.566 4.566 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.072 4.072 27 C -0.235 4.235 28 N -0.066 5.066 29 O 0.023 5.977 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.030 0.970 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.159 0.841 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.092 -16.869 7.383 29.535 hybrid contribution -0.435 1.020 0.161 1.120 sum -23.527 -15.850 7.545 29.354 Atomic orbital electron populations 1.20444 0.79790 1.05837 1.05965 1.28927 0.99065 0.80402 0.95593 1.71892 0.99963 1.28895 1.19672 1.25170 0.94557 0.88059 1.02558 1.20581 0.89095 0.98534 0.84011 1.86001 1.40471 1.68820 1.26871 1.19078 0.85311 0.91696 0.94527 1.20312 0.98578 1.03809 0.94544 1.21042 0.91876 0.92650 0.99150 1.20167 0.98064 1.03005 0.93880 1.18152 0.85236 0.80849 0.82339 1.90743 1.48883 1.69335 1.33853 1.48168 1.28415 1.27475 1.27432 1.21912 0.93236 1.02848 0.88568 1.18985 0.81280 0.88358 0.95633 0.91790 1.22079 1.02271 0.98239 0.97840 1.21280 0.93493 0.92614 1.49213 0.92238 1.24891 0.94818 0.99079 0.94970 1.69869 1.00493 1.33656 1.48472 0.86544 0.78091 0.83895 0.78779 1.20232 1.21168 1.20230 1.21494 0.94374 0.94256 0.97076 1.21113 0.99085 1.05563 0.97745 1.74690 0.97562 1.15463 1.18920 1.85332 1.11320 1.35864 1.65155 0.88269 0.87602 0.87597 0.88754 0.88226 0.84798 0.84235 0.93795 0.89934 0.92188 0.95157 0.96952 0.88785 0.92599 0.84135 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 10.51 36.01 0.38 0.29 16 2 C 0.18 1.23 8.51 -13.06 -0.11 1.12 16 3 N -0.47 -4.64 11.55 -9.86 -0.11 -4.75 16 4 C 0.17 1.80 7.85 -156.36 -1.23 0.57 16 5 C 0.15 1.47 5.36 36.01 0.19 1.66 16 6 O -0.31 -3.76 10.11 -18.83 -0.19 -3.95 16 7 C 0.14 1.75 6.70 -39.02 -0.26 1.49 16 8 C -0.15 -2.04 9.97 -39.50 -0.39 -2.43 16 9 C -0.03 -0.43 9.62 -39.22 -0.38 -0.81 16 10 C -0.15 -2.50 5.23 -104.96 -0.55 -3.05 16 11 C 0.55 11.82 7.34 -12.44 -0.09 11.73 16 12 O -0.55 -13.99 16.25 5.29 0.09 -13.90 16 13 N -0.58 -12.68 2.75 -176.46 -0.49 -13.16 16 14 C 0.08 1.32 7.83 59.85 0.47 1.79 16 15 C 0.26 6.62 2.63 -69.08 -0.18 6.44 16 16 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 17 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 18 C -0.53 -14.24 7.96 -34.44 -0.27 -14.51 16 19 H 0.06 1.58 7.41 -52.49 -0.39 1.19 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.05 -0.73 7.55 -39.22 -0.30 -1.03 16 27 C -0.22 -2.51 9.01 -39.49 -0.36 -2.87 16 28 N -0.36 -3.91 12.16 30.90 0.38 -3.54 16 29 O 0.09 0.74 11.31 18.10 0.20 0.94 16 30 H 0.10 -0.07 8.14 -51.93 -0.42 -0.50 16 31 H 0.11 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.09 0.75 7.65 -51.93 -0.40 0.35 16 34 H 0.10 0.78 7.65 -51.93 -0.40 0.38 16 35 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.14 2.12 8.05 -52.49 -0.42 1.70 16 37 H 0.04 0.63 6.90 -51.93 -0.36 0.27 16 38 H 0.08 1.48 7.09 -51.93 -0.37 1.11 16 39 H 0.06 0.89 5.81 -51.93 -0.30 0.59 16 40 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.14 1.75 5.32 -52.49 -0.28 1.47 16 45 H 0.13 1.10 6.28 -52.49 -0.33 0.77 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -34.95 378.37 -7.22 -42.17 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.56 Total: 0.03 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.84 Total: -1.10 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.40 Total: -45.90 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.10 Total: -16.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.95 -7.22 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.557 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds