Wall clock time and date at job start Wed Apr 1 2020 04:09:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.31127 * 126.55469 * 2 1
4 4 C 1.34496 * 105.61970 * 179.97438 * 3 2 1
5 5 C 1.50696 * 126.29238 * 179.97438 * 4 3 2
6 6 O 1.42900 * 109.46759 * 90.00090 * 5 4 3
7 7 C 1.35717 * 116.99737 * 180.02562 * 6 5 4
8 8 C 1.38995 * 119.91149 * 359.72626 * 7 6 5
9 9 C 1.37702 * 120.08903 * 179.72503 * 8 7 6
10 10 C 1.39741 * 119.90616 * 0.57156 * 9 8 7
11 11 C 1.47599 * 120.08322 * 179.68070 * 10 9 8
12 12 O 1.21585 * 119.99612 * 147.87124 * 11 10 9
13 13 N 1.34772 * 120.00579 * 327.87371 * 11 10 9
14 14 C 1.46507 * 119.99655 * 4.32999 * 13 11 10
15 15 C 1.46502 * 120.00340 * 184.33310 * 13 11 10
16 16 H 1.08998 * 109.46721 * 359.97438 * 15 13 11
17 17 C 1.53003 * 109.47098 * 119.99829 * 15 13 11
18 18 C 1.50699 * 109.46920 * 239.99917 * 15 13 11
19 19 H 1.07995 * 120.00132 * 359.97438 * 18 15 13
20 20 C 1.37881 * 119.99894 * 180.02562 * 18 15 13
21 21 N 1.31512 * 119.99440 * 359.97438 * 20 18 15
22 22 Si 1.86796 * 119.99844 * 179.97438 * 20 18 15
23 23 H 1.48498 * 109.47539 * 59.99771 * 22 20 18
24 24 H 1.48499 * 109.46993 * 179.97438 * 22 20 18
25 25 H 1.48501 * 109.47122 * 299.99451 * 22 20 18
26 26 C 1.39733 * 119.82651 * 359.69993 * 10 9 8
27 27 C 1.37704 * 119.90813 * 0.02562 * 26 10 9
28 28 N 1.29956 * 107.41862 * 359.97438 * 4 3 2
29 29 O 1.21298 * 110.24971 * 359.70334 * 28 4 3
30 30 H 1.09003 * 109.47284 * 89.99882 * 1 2 3
31 31 H 1.09001 * 109.47623 * 210.00144 * 1 2 3
32 32 H 1.09012 * 109.47223 * 330.00638 * 1 2 3
33 33 H 1.08996 * 109.46988 * 210.00179 * 5 4 3
34 34 H 1.09001 * 109.47109 * 330.00778 * 5 4 3
35 35 H 1.07998 * 119.95555 * 0.02562 * 8 7 6
36 36 H 1.07999 * 120.04828 * 180.27372 * 9 8 7
37 37 H 1.09001 * 109.47047 * 94.72040 * 14 13 11
38 38 H 1.08999 * 109.47085 * 214.72353 * 14 13 11
39 39 H 1.08999 * 109.46796 * 334.71693 * 14 13 11
40 40 H 1.09000 * 109.47150 * 59.99929 * 17 15 13
41 41 H 1.08997 * 109.47066 * 180.02562 * 17 15 13
42 42 H 1.08999 * 109.46875 * 299.99932 * 17 15 13
43 43 H 0.97009 * 119.99161 * 180.02562 * 21 20 18
44 44 H 1.08004 * 120.04622 * 179.97438 * 26 10 9
45 45 H 1.08009 * 119.95067 * 179.97438 * 27 26 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2879 1.0533 0.0000
4 6 3.5441 0.5728 0.0006
5 6 4.8112 1.3885 0.0003
6 8 5.2114 1.6472 1.3475
7 6 6.3424 2.3761 1.5251
8 6 7.0559 2.8283 0.4213
9 6 8.2008 3.5730 0.5972
10 6 8.6515 3.8636 1.8876
11 6 9.8821 4.6554 2.0807
12 8 9.9875 5.3897 3.0440
13 7 10.8887 4.5647 1.1892
14 6 10.7252 3.7542 -0.0202
15 6 12.1465 5.2764 1.4295
16 1 12.0813 5.8215 2.3712
17 6 13.2966 4.2698 1.5009
18 6 12.3974 6.2469 0.3042
19 1 11.6909 6.3253 -0.5088
20 6 13.5295 7.0339 0.3122
21 7 14.3900 6.9379 1.3020
22 14 13.8408 8.2363 -1.0830
23 1 12.7250 9.2136 -1.1526
24 1 15.1157 8.9579 -0.8394
25 1 13.9292 7.4937 -2.3660
26 6 7.9344 3.4023 2.9946
27 6 6.7873 2.6630 2.8102
28 7 3.4644 -0.7243 0.0015
29 8 2.3028 -1.0736 0.0074
30 1 -0.3634 0.0000 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3634 0.8901 0.5138
33 1 5.5985 0.8365 -0.5130
34 1 4.6350 2.3332 -0.5141
35 1 6.7093 2.5996 -0.5756
36 1 8.7523 3.9278 -0.2609
37 1 10.3960 4.3901 -0.8420
38 1 11.6773 3.2906 -0.2784
39 1 9.9807 2.9788 0.1600
40 1 13.3616 3.7250 0.5590
41 1 14.2323 4.7993 1.6801
42 1 13.1150 3.5679 2.3148
43 1 15.1863 7.4919 1.3078
44 1 8.2798 3.6245 3.9935
45 1 6.2327 2.3057 3.6653
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000609143203.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:09:27
Heat of formation + Delta-G solvation = 26.277973 kcal
Electronic energy + Delta-G solvation = -28836.756172 eV
Core-core repulsion = 24630.527274 eV
Total energy + Delta-G solvation = -4206.228898 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-46.78935 -41.69433 -40.65324 -38.39147 -37.21967 -37.00347 -34.95817 -34.69308
-32.63142 -31.80018 -30.74743 -29.86084 -29.15236 -27.91504 -27.30561 -25.09389
-24.61384 -23.88845 -22.80818 -22.19443 -20.51358 -19.69118 -19.02646 -18.73576
-18.60205 -18.07826 -17.53751 -17.07984 -16.97244 -16.40689 -16.05508 -15.83310
-15.63148 -15.22328 -15.07027 -14.59542 -14.46428 -14.28164 -14.18219 -14.01496
-13.81138 -13.72701 -13.49012 -13.40870 -13.07025 -12.96207 -12.87483 -12.77983
-12.70448 -12.58597 -12.31961 -12.19725 -12.14877 -12.05813 -11.75483 -11.19299
-11.05894 -10.76254 -10.50829 -10.09583 -9.47704 -9.26258 -8.14382 -6.31237
-0.08831 -0.00950 0.25736 0.81847 1.41665 1.44550 1.51773 1.80294
1.85033 1.99322 2.27147 2.46788 2.66343 2.74462 2.87007 3.13363
3.59671 3.66655 3.78048 3.83516 3.96025 4.14232 4.19630 4.30283
4.41250 4.45967 4.49825 4.60543 4.65513 4.67427 4.71830 4.86705
4.90529 4.92404 4.98625 5.01649 5.03482 5.13799 5.14798 5.33258
5.46000 5.49951 5.62817 5.65523 6.01912 6.14707 6.15440 6.75214
6.77037 7.01243 7.27795 7.44238 8.89886
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.024260 B = 0.001847 C = 0.001791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.875280 B =15154.282447 C =15629.344675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C 0.194 3.806
3 N -0.502 5.502
4 C 0.155 3.845
5 C 0.147 3.853
6 O -0.319 6.319
7 C 0.150 3.850
8 C -0.203 4.203
9 C -0.054 4.054
10 C -0.177 4.177
11 C 0.538 3.462
12 O -0.605 6.605
13 N -0.591 5.591
14 C 0.066 3.934
15 C 0.260 3.740
16 H 0.009 0.991
17 C -0.133 4.133
18 C -0.538 4.538
19 H 0.062 0.938
20 C 0.013 3.987
21 N -0.918 5.918
22 Si 0.967 3.033
23 H -0.278 1.278
24 H -0.284 1.284
25 H -0.260 1.260
26 C -0.034 4.034
27 C -0.156 4.156
28 N -0.384 5.384
29 O 0.084 5.916
30 H 0.127 0.873
31 H 0.124 0.876
32 H 0.114 0.886
33 H 0.115 0.885
34 H 0.118 0.882
35 H 0.170 0.830
36 H 0.162 0.838
37 H 0.068 0.932
38 H 0.070 0.930
39 H 0.103 0.897
40 H 0.050 0.950
41 H 0.069 0.931
42 H 0.019 0.981
43 H 0.265 0.735
44 H 0.130 0.870
45 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.386 -17.990 -7.758 34.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.025 4.025
3 N -0.237 5.237
4 C -0.118 4.118
5 C 0.071 3.929
6 O -0.232 6.232
7 C 0.105 3.895
8 C -0.221 4.221
9 C -0.072 4.072
10 C -0.180 4.180
11 C 0.328 3.672
12 O -0.489 6.489
13 N -0.320 5.320
14 C -0.076 4.076
15 C 0.158 3.842
16 H 0.027 0.973
17 C -0.191 4.191
18 C -0.577 4.577
19 H 0.081 0.919
20 C -0.186 4.186
21 N -0.556 5.556
22 Si 0.792 3.208
23 H -0.204 1.204
24 H -0.210 1.210
25 H -0.185 1.185
26 C -0.053 4.053
27 C -0.174 4.174
28 N -0.092 5.092
29 O 0.021 5.979
30 H 0.145 0.855
31 H 0.142 0.858
32 H 0.132 0.868
33 H 0.132 0.868
34 H 0.135 0.865
35 H 0.188 0.812
36 H 0.179 0.821
37 H 0.086 0.914
38 H 0.089 0.911
39 H 0.121 0.879
40 H 0.069 0.931
41 H 0.088 0.912
42 H 0.038 0.962
43 H 0.074 0.926
44 H 0.148 0.852
45 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -27.414 -17.693 -7.092 33.389
hybrid contribution 0.759 0.991 -0.219 1.267
sum -26.655 -16.702 -7.311 32.294
Atomic orbital electron populations
1.20836 0.76090 1.07672 1.07471 1.29927 1.00550 0.79232 0.92777
1.71920 1.00170 1.30153 1.21461 1.25414 0.95252 0.88246 1.02855
1.20898 0.89481 0.99654 0.82824 1.85992 1.39898 1.68305 1.28959
1.19183 0.85182 0.90643 0.94534 1.21451 0.97224 1.04111 0.99348
1.21870 0.94887 0.94120 0.96328 1.19843 0.97137 1.05015 0.95987
1.18913 0.84160 0.81901 0.82232 1.90693 1.82305 1.42439 1.33438
1.48124 1.14766 1.47436 1.21710 1.22472 1.03748 0.95062 0.86273
1.18600 0.79430 0.90067 0.96116 0.97327 1.21881 1.01260 0.97478
0.98487 1.21522 1.06881 1.21682 1.07583 0.91949 1.25768 0.95605
0.98643 0.98598 1.70023 1.12189 1.40668 1.32757 0.85477 0.77121
0.78693 0.79519 1.20355 1.20964 1.18494 1.20995 0.92595 0.93256
0.98445 1.20411 0.97830 1.03308 0.95857 1.74669 0.98753 1.15818
1.19975 1.85287 1.11003 1.36299 1.65278 0.85510 0.85765 0.86797
0.86753 0.86463 0.81219 0.82057 0.91381 0.91096 0.87900 0.93126
0.91191 0.96198 0.92630 0.85190 0.83235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 0.02 10.51 71.23 0.75 0.77 16
2 C 0.19 2.22 8.51 88.38 0.75 2.98 16
3 N -0.50 -8.98 11.55 -303.18 -3.50 -12.49 16
4 C 0.15 2.98 7.85 138.46 1.09 4.07 16
5 C 0.15 2.35 5.36 71.23 0.38 2.73 16
6 O -0.32 -6.84 10.11 -90.38 -0.91 -7.75 16
7 C 0.15 3.35 6.70 22.63 0.15 3.50 16
8 C -0.20 -3.98 9.01 22.32 0.20 -3.78 16
9 C -0.05 -1.36 7.42 22.51 0.17 -1.19 16
10 C -0.18 -5.92 5.47 -20.08 -0.11 -6.03 16
11 C 0.54 24.15 7.43 86.71 0.64 24.79 16
12 O -0.60 -33.08 16.09 -3.99 -0.06 -33.15 16
13 N -0.59 -26.14 2.75 -830.47 -2.29 -28.42 16
14 C 0.07 2.11 8.08 127.77 1.03 3.14 16
15 C 0.26 13.92 2.63 44.25 0.12 14.04 16
16 H 0.01 0.56 6.91 -2.39 -0.02 0.55 16
17 C -0.13 -6.53 8.94 71.98 0.64 -5.89 16
18 C -0.54 -29.66 8.37 25.60 0.21 -29.45 16
19 H 0.06 3.30 7.51 -2.91 -0.02 3.28 16
20 C 0.01 0.74 5.30 84.66 0.45 1.19 16
21 N -0.92 -53.56 11.32 21.45 0.24 -53.31 16
22 Si 0.97 43.34 29.54 68.60 2.03 45.37 16
23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16
26 C -0.03 -1.02 9.59 22.50 0.22 -0.81 16
27 C -0.16 -3.84 9.97 22.32 0.22 -3.61 16
28 N -0.38 -7.73 12.16 -60.30 -0.73 -8.46 16
29 O 0.08 1.29 11.31 74.85 0.85 2.14 16
30 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16
31 H 0.12 -0.60 8.14 -2.39 -0.02 -0.61 16
32 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16
33 H 0.11 1.36 7.64 -2.39 -0.02 1.34 16
34 H 0.12 1.43 7.66 -2.39 -0.02 1.42 16
35 H 0.17 2.00 6.28 -2.91 -0.02 1.98 16
36 H 0.16 3.66 4.82 -2.91 -0.01 3.64 16
37 H 0.07 2.00 7.29 -2.39 -0.02 1.98 16
38 H 0.07 2.26 6.45 -2.39 -0.02 2.24 16
39 H 0.10 2.60 4.71 -2.39 -0.01 2.59 16
40 H 0.05 2.24 6.69 -2.39 -0.02 2.22 16
41 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16
42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
43 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16
44 H 0.13 4.08 7.95 -2.91 -0.02 4.05 16
45 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16
Total: -1.00 -81.32 376.20 3.58 -77.74
By element:
Atomic # 1 Polarization: 10.83 SS G_CDS: 1.04 Total: 11.88 kcal
Atomic # 6 Polarization: -0.45 SS G_CDS: 6.92 Total: 6.46 kcal
Atomic # 7 Polarization: -96.40 SS G_CDS: -6.28 Total: -102.68 kcal
Atomic # 8 Polarization: -38.63 SS G_CDS: -0.13 Total: -38.76 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -81.32 3.58 -77.74 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609143203.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.015 kcal
(2) G-P(sol) polarization free energy of solvation -81.315 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.700 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.278 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds