Wall clock time and date at job start Wed Apr 1 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99923 * 2 1 4 4 C 1.52998 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47397 * 64.99685 * 4 3 2 6 6 C 1.46499 * 119.99914 * 64.85243 * 5 4 3 7 7 C 1.50705 * 109.47221 * 270.00375 * 6 5 4 8 8 H 1.08003 * 119.99582 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00017 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99938 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 120.00138 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46760 * 90.00563 * 11 9 7 13 13 H 1.48498 * 109.47196 * 210.00411 * 11 9 7 14 14 H 1.48496 * 109.46823 * 330.00518 * 11 9 7 15 15 C 1.34774 * 120.00083 * 244.85540 * 5 4 3 16 16 O 1.21694 * 119.99572 * 191.95734 * 15 5 4 17 17 C 1.46736 * 120.00068 * 11.94987 * 15 5 4 18 18 C 1.40174 * 120.75356 * 61.70577 * 17 15 5 19 19 N 1.31676 * 119.81060 * 180.02562 * 18 17 15 20 20 C 1.33583 * 121.70703 * 359.97438 * 19 18 17 21 21 C 1.40472 * 119.23906 * 179.97438 * 20 19 18 22 22 C 1.36456 * 119.52163 * 179.97438 * 21 20 19 23 23 C 1.50701 * 120.23338 * 179.97438 * 22 21 20 24 24 C 1.40052 * 119.52853 * 0.02562 * 22 21 20 25 25 C 1.35326 * 120.06697 * 359.67773 * 24 22 21 26 26 N 1.36110 * 120.76824 * 0.62338 * 25 24 22 27 27 C 1.35068 * 119.43165 * 179.67378 * 26 25 24 28 28 O 1.21863 * 120.61226 * 359.74639 * 27 26 25 29 29 H 1.09003 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47125 * 299.99702 * 1 2 3 31 31 H 1.09002 * 109.47178 * 60.00334 * 1 2 3 32 32 H 1.08993 * 109.47163 * 59.99846 * 3 2 1 33 33 H 1.09003 * 109.46598 * 299.99913 * 3 2 1 34 34 H 1.09001 * 109.47000 * 305.00025 * 4 3 2 35 35 H 1.08998 * 109.47262 * 185.00176 * 4 3 2 36 36 H 1.09005 * 109.47069 * 29.99950 * 6 5 4 37 37 H 1.08993 * 109.46989 * 149.99780 * 6 5 4 38 38 H 0.97004 * 120.00034 * 179.97438 * 10 9 7 39 39 H 1.07998 * 120.09328 * 359.97438 * 18 17 15 40 40 H 1.07998 * 120.23851 * 359.97438 * 21 20 19 41 41 H 1.09004 * 109.47502 * 90.00441 * 23 22 21 42 42 H 1.09005 * 109.47072 * 210.00324 * 23 22 21 43 43 H 1.08999 * 109.47360 * 329.99768 * 23 22 21 44 44 H 1.07997 * 119.96146 * 180.02562 * 24 22 21 45 45 H 1.07997 * 119.60705 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.7650 1.2564 -2.5267 7 6 2.4264 0.8634 -3.0965 8 1 1.7958 0.1673 -2.5631 9 6 2.0071 1.3914 -4.2990 10 7 0.8391 1.0480 -4.7966 11 14 3.0981 2.5948 -5.2218 12 1 3.9895 1.8471 -6.1448 13 1 2.2514 3.5322 -6.0025 14 1 3.9205 3.3613 -4.2518 15 6 4.5745 -0.6428 -1.2325 16 8 5.1328 -1.0617 -2.2294 17 6 4.5535 -1.4519 -0.0086 18 6 3.3405 -1.8924 0.5386 19 7 3.3432 -2.6172 1.6380 20 6 4.4794 -2.9507 2.2562 21 6 4.4219 -3.7254 3.4266 22 6 5.5791 -4.0699 4.0625 23 6 5.5360 -4.9001 5.3195 24 6 6.8069 -3.6454 3.5393 25 6 6.8419 -2.9047 2.4073 26 7 5.6919 -2.5518 1.7703 27 6 5.7579 -1.8063 0.6460 28 8 6.8343 -1.4455 0.2029 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9785 2.1766 0.0890 36 1 3.7880 2.3339 -2.3630 37 1 4.5535 0.9783 -3.2259 38 1 0.5440 1.4198 -5.6425 39 1 2.4064 -1.6375 0.0603 40 1 3.4687 -4.0462 3.8202 41 1 5.5807 -5.9574 5.0583 42 1 6.3865 -4.6459 5.9521 43 1 4.6099 -4.6974 5.8573 44 1 7.7270 -3.9144 4.0367 45 1 7.7928 -2.5817 2.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610491907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:21 Heat of formation + Delta-G solvation = -21.008318 kcal Electronic energy + Delta-G solvation = -31203.078321 eV Core-core repulsion = 26994.798936 eV Total energy + Delta-G solvation = -4208.279385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.74231 -39.38971 -38.24981 -37.34733 -37.17309 -34.92314 -34.71859 -32.57415 -31.77366 -30.63406 -29.53722 -28.93530 -27.40168 -25.76258 -24.96410 -24.10881 -23.36487 -22.35815 -22.17655 -19.74549 -18.86040 -17.97571 -17.77020 -16.96045 -16.73719 -16.36498 -16.07062 -15.76153 -15.20718 -15.16655 -14.99207 -14.84625 -14.56455 -14.24276 -14.08977 -13.65470 -13.24533 -13.19225 -13.15414 -12.85064 -12.47924 -12.39973 -12.25138 -12.20399 -12.14176 -11.81253 -11.48768 -11.31690 -10.79317 -10.61586 -10.53453 -10.51084 -10.47546 -10.08653 -9.93379 -9.58940 -9.40125 -9.09794 -8.93357 -8.51373 -7.72176 -7.55674 -6.02271 -3.99127 -0.12626 0.34435 1.94386 1.98744 2.35576 3.34465 3.40548 3.41233 3.44711 3.70893 3.79867 3.93619 4.06666 4.18091 4.21675 4.35560 4.46693 4.55883 4.81646 4.97478 5.01975 5.16535 5.24501 5.26677 5.35559 5.37089 5.51529 5.54888 5.60003 5.70787 5.75404 5.79695 5.88626 5.92029 5.93749 6.09465 6.24198 6.29826 6.50986 6.62164 6.78940 7.08966 7.46726 7.67134 7.69349 7.70709 7.73068 8.35628 8.56762 9.05880 9.13534 9.59820 11.10368 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.003387 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.112943 B = 8265.223631 C = 9243.490280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.385 6.385 3 C 0.045 3.955 4 C 0.118 3.882 5 N -0.585 5.585 6 C 0.214 3.786 7 C -0.524 4.524 8 H 0.087 0.913 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.870 3.130 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.266 1.266 15 C 0.595 3.405 16 O -0.530 6.530 17 C -0.336 4.336 18 C 0.232 3.768 19 N -0.540 5.540 20 C 0.390 3.610 21 C -0.142 4.142 22 C -0.004 4.004 23 C -0.121 4.121 24 C -0.173 4.173 25 C 0.109 3.891 26 N -0.428 5.428 27 C 0.524 3.476 28 O -0.512 6.512 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.263 0.737 39 H 0.201 0.799 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.158 0.842 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -8.403 25.109 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.305 6.305 3 C -0.032 4.032 4 C -0.006 4.006 5 N -0.316 5.316 6 C 0.094 3.906 7 C -0.562 4.562 8 H 0.105 0.895 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.697 3.303 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.191 1.191 15 C 0.381 3.619 16 O -0.407 6.407 17 C -0.347 4.347 18 C 0.082 3.918 19 N -0.264 5.264 20 C 0.149 3.851 21 C -0.162 4.162 22 C -0.010 4.010 23 C -0.177 4.177 24 C -0.194 4.194 25 C -0.015 4.015 26 N -0.131 5.131 27 C 0.328 3.672 28 O -0.389 6.389 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.217 0.783 40 H 0.183 0.817 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.175 0.825 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.184 -8.611 24.200 26.421 hybrid contribution 0.853 1.174 -0.971 1.746 sum 7.037 -7.437 23.229 25.385 Atomic orbital electron populations 1.22638 0.81276 1.02176 0.99830 1.87577 1.19599 1.27872 1.95414 1.23010 0.93637 0.85408 1.01150 1.21476 0.93182 0.98572 0.87380 1.47653 1.57967 1.18120 1.07903 1.19687 0.98239 0.91686 0.81031 1.21479 1.01194 1.27662 1.05879 0.89498 1.24831 0.94908 0.96386 0.96808 1.69892 1.19659 1.44315 1.19840 0.86943 0.80972 0.81587 0.80763 1.19977 1.21292 1.19103 1.16923 0.78333 0.80780 0.85867 1.90753 1.43484 1.70924 1.35512 1.21578 0.92249 1.15909 1.04977 1.24020 0.99034 0.82703 0.86018 1.68957 1.21069 1.22730 1.13635 1.20791 0.80027 0.90962 0.93299 1.20824 1.00575 1.01080 0.93749 1.20291 0.92223 0.92888 0.95619 1.20942 1.04142 0.99360 0.93296 1.20906 0.99462 1.02170 0.96816 1.22396 0.91743 0.94587 0.92780 1.44504 1.07638 1.38308 1.22694 1.17121 0.91430 0.79490 0.79164 1.90946 1.30143 1.54518 1.63320 0.90324 0.95170 0.93051 0.93959 0.89880 0.91080 0.90359 0.95354 0.94272 0.92746 0.78277 0.81684 0.89583 0.90357 0.90186 0.82481 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 11.01 101.05 1.11 1.68 16 2 O -0.39 -6.79 6.50 -35.23 -0.23 -7.02 16 3 C 0.05 0.76 5.56 37.16 0.21 0.97 16 4 C 0.12 2.08 5.72 -4.04 -0.02 2.06 16 5 N -0.58 -13.23 2.55 -176.58 -0.45 -13.68 16 6 C 0.21 5.43 4.04 -5.19 -0.02 5.41 16 7 C -0.52 -14.76 8.26 -34.44 -0.28 -15.04 16 8 H 0.09 2.63 7.34 -52.48 -0.39 2.24 16 9 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 10 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 11 Si 0.87 21.88 27.47 -169.99 -4.67 17.22 16 12 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 15 C 0.60 14.43 6.66 -12.83 -0.09 14.35 16 16 O -0.53 -15.17 16.65 5.19 0.09 -15.08 16 17 C -0.34 -6.76 4.14 -104.46 -0.43 -7.20 16 18 C 0.23 4.08 9.31 -16.89 -0.16 3.92 16 19 N -0.54 -8.09 10.28 -11.95 -0.12 -8.22 16 20 C 0.39 4.97 7.32 -155.80 -1.14 3.83 16 21 C -0.14 -1.19 9.60 -39.38 -0.38 -1.56 16 22 C 0.00 -0.02 5.88 -104.58 -0.62 -0.64 16 23 C -0.12 -0.31 10.03 36.01 0.36 0.05 16 24 C -0.17 -1.06 9.69 -39.94 -0.39 -1.44 16 25 C 0.11 1.07 10.07 -16.69 -0.17 0.90 16 26 N -0.43 -5.94 2.76 -64.90 -0.18 -6.11 16 27 C 0.52 9.78 7.39 -14.85 -0.11 9.67 16 28 O -0.51 -10.94 16.15 5.04 0.08 -10.86 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.64 6.58 -51.93 -0.34 1.30 16 34 H 0.07 1.17 5.91 -51.93 -0.31 0.86 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 37 H 0.04 1.09 6.73 -51.93 -0.35 0.74 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.20 3.70 4.95 -52.49 -0.26 3.44 16 40 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.08 0.11 8.10 -51.93 -0.42 -0.31 16 43 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 44 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 45 H 0.18 1.66 7.32 -52.49 -0.38 1.27 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -38.71 372.64 -7.10 -45.81 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.79 Total: -0.11 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: -2.22 Total: 18.95 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.02 Total: -54.51 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.06 Total: -32.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.71 -7.10 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610491907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.798 kcal (2) G-P(sol) polarization free energy of solvation -38.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds