Wall clock time and date at job start Wed Apr 1 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99923 * 2 1 4 4 C 1.52998 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47397 * 64.99685 * 4 3 2 6 6 C 1.46499 * 119.99914 * 64.85243 * 5 4 3 7 7 C 1.50705 * 109.47221 * 270.00375 * 6 5 4 8 8 H 1.08003 * 119.99582 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00017 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99938 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 120.00138 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46760 * 90.00563 * 11 9 7 13 13 H 1.48498 * 109.47196 * 210.00411 * 11 9 7 14 14 H 1.48496 * 109.46823 * 330.00518 * 11 9 7 15 15 C 1.34774 * 120.00083 * 244.85540 * 5 4 3 16 16 O 1.21694 * 119.99572 * 191.95734 * 15 5 4 17 17 C 1.46736 * 120.00068 * 11.94987 * 15 5 4 18 18 C 1.40174 * 120.75356 * 61.70577 * 17 15 5 19 19 N 1.31676 * 119.81060 * 180.02562 * 18 17 15 20 20 C 1.33583 * 121.70703 * 359.97438 * 19 18 17 21 21 C 1.40472 * 119.23906 * 179.97438 * 20 19 18 22 22 C 1.36456 * 119.52163 * 179.97438 * 21 20 19 23 23 C 1.50701 * 120.23338 * 179.97438 * 22 21 20 24 24 C 1.40052 * 119.52853 * 0.02562 * 22 21 20 25 25 C 1.35326 * 120.06697 * 359.67773 * 24 22 21 26 26 N 1.36110 * 120.76824 * 0.62338 * 25 24 22 27 27 C 1.35068 * 119.43165 * 179.67378 * 26 25 24 28 28 O 1.21863 * 120.61226 * 359.74639 * 27 26 25 29 29 H 1.09003 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47125 * 299.99702 * 1 2 3 31 31 H 1.09002 * 109.47178 * 60.00334 * 1 2 3 32 32 H 1.08993 * 109.47163 * 59.99846 * 3 2 1 33 33 H 1.09003 * 109.46598 * 299.99913 * 3 2 1 34 34 H 1.09001 * 109.47000 * 305.00025 * 4 3 2 35 35 H 1.08998 * 109.47262 * 185.00176 * 4 3 2 36 36 H 1.09005 * 109.47069 * 29.99950 * 6 5 4 37 37 H 1.08993 * 109.46989 * 149.99780 * 6 5 4 38 38 H 0.97004 * 120.00034 * 179.97438 * 10 9 7 39 39 H 1.07998 * 120.09328 * 359.97438 * 18 17 15 40 40 H 1.07998 * 120.23851 * 359.97438 * 21 20 19 41 41 H 1.09004 * 109.47502 * 90.00441 * 23 22 21 42 42 H 1.09005 * 109.47072 * 210.00324 * 23 22 21 43 43 H 1.08999 * 109.47360 * 329.99768 * 23 22 21 44 44 H 1.07997 * 119.96146 * 180.02562 * 24 22 21 45 45 H 1.07997 * 119.60705 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.7650 1.2564 -2.5267 7 6 2.4264 0.8634 -3.0965 8 1 1.7958 0.1673 -2.5631 9 6 2.0071 1.3914 -4.2990 10 7 0.8391 1.0480 -4.7966 11 14 3.0981 2.5948 -5.2218 12 1 3.9895 1.8471 -6.1448 13 1 2.2514 3.5322 -6.0025 14 1 3.9205 3.3613 -4.2518 15 6 4.5745 -0.6428 -1.2325 16 8 5.1328 -1.0617 -2.2294 17 6 4.5535 -1.4519 -0.0086 18 6 3.3405 -1.8924 0.5386 19 7 3.3432 -2.6172 1.6380 20 6 4.4794 -2.9507 2.2562 21 6 4.4219 -3.7254 3.4266 22 6 5.5791 -4.0699 4.0625 23 6 5.5360 -4.9001 5.3195 24 6 6.8069 -3.6454 3.5393 25 6 6.8419 -2.9047 2.4073 26 7 5.6919 -2.5518 1.7703 27 6 5.7579 -1.8063 0.6460 28 8 6.8343 -1.4455 0.2029 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9785 2.1766 0.0890 36 1 3.7880 2.3339 -2.3630 37 1 4.5535 0.9783 -3.2259 38 1 0.5440 1.4198 -5.6425 39 1 2.4064 -1.6375 0.0603 40 1 3.4687 -4.0462 3.8202 41 1 5.5807 -5.9574 5.0583 42 1 6.3865 -4.6459 5.9521 43 1 4.6099 -4.6974 5.8573 44 1 7.7270 -3.9144 4.0367 45 1 7.7928 -2.5817 2.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610491907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:20 Heat of formation + Delta-G solvation = -49.472375 kcal Electronic energy + Delta-G solvation = -31204.312616 eV Core-core repulsion = 26994.798936 eV Total energy + Delta-G solvation = -4209.513679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.83098 -40.92462 -39.53637 -38.64209 -38.45288 -36.54889 -35.82693 -34.68956 -32.96063 -31.56119 -31.15605 -30.06708 -28.92225 -27.06844 -25.98373 -25.34826 -24.39444 -24.07314 -23.59401 -21.07626 -20.14574 -19.37291 -18.97011 -18.77171 -18.15574 -17.71525 -17.48821 -16.91608 -16.77384 -16.34428 -16.23319 -16.03577 -15.80277 -15.75260 -15.22780 -14.92351 -14.84907 -14.52157 -14.24431 -14.04702 -13.78210 -13.62417 -13.55227 -13.36830 -13.24322 -13.08754 -12.84911 -12.64399 -12.56418 -12.42106 -12.03469 -11.99090 -11.88917 -11.60401 -11.25103 -11.19173 -10.80278 -10.77965 -10.53327 -10.40813 -9.44664 -8.87988 -8.27266 -6.28552 -1.07802 -0.55949 0.79142 0.87927 1.31232 1.36617 1.41787 1.43640 1.87070 2.25761 2.33882 2.61148 2.72331 2.95564 3.05247 3.19165 3.42675 3.55148 3.79201 3.83543 4.03573 4.13276 4.21865 4.24816 4.37534 4.48822 4.57148 4.57565 4.64338 4.68008 4.74604 4.77225 4.84311 4.92122 4.92715 4.97664 5.05082 5.12483 5.23639 5.24190 5.36278 5.49488 5.51233 5.65243 6.33032 6.38568 6.41778 6.55254 6.61795 6.75889 7.25363 7.40020 8.88204 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.003387 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.112943 B = 8265.223631 C = 9243.490280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.402 6.402 3 C 0.050 3.950 4 C 0.114 3.886 5 N -0.587 5.587 6 C 0.222 3.778 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.018 3.982 10 N -0.939 5.939 11 Si 0.932 3.068 12 H -0.284 1.284 13 H -0.274 1.274 14 H -0.244 1.244 15 C 0.590 3.410 16 O -0.597 6.597 17 C -0.391 4.391 18 C 0.260 3.740 19 N -0.553 5.553 20 C 0.381 3.619 21 C -0.149 4.149 22 C 0.031 3.969 23 C -0.122 4.122 24 C -0.130 4.130 25 C 0.074 3.926 26 N -0.426 5.426 27 C 0.524 3.476 28 O -0.558 6.558 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.185 0.815 40 H 0.190 0.810 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.208 0.792 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.284 -9.599 30.526 32.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.322 6.322 3 C -0.027 4.027 4 C -0.009 4.009 5 N -0.317 5.317 6 C 0.100 3.900 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.180 4.180 10 N -0.580 5.580 11 Si 0.756 3.244 12 H -0.211 1.211 13 H -0.199 1.199 14 H -0.167 1.167 15 C 0.378 3.622 16 O -0.478 6.478 17 C -0.403 4.403 18 C 0.105 3.895 19 N -0.276 5.276 20 C 0.145 3.855 21 C -0.169 4.169 22 C 0.024 3.976 23 C -0.178 4.178 24 C -0.150 4.150 25 C -0.049 4.049 26 N -0.126 5.126 27 C 0.330 3.670 28 O -0.439 6.439 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.202 0.798 40 H 0.207 0.793 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.225 0.775 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.441 -9.826 29.757 32.208 hybrid contribution 0.511 1.220 -2.205 2.571 sum 7.952 -8.606 27.552 29.940 Atomic orbital electron populations 1.22697 0.80270 1.02960 0.99817 1.87587 1.20761 1.28350 1.95480 1.22950 0.93002 0.85249 1.01461 1.21814 0.93874 0.99669 0.85509 1.47721 1.57519 1.17932 1.08560 1.19398 0.95481 0.92896 0.82190 1.21546 1.01754 1.26570 1.05801 0.92805 1.25625 0.96212 0.98429 0.97732 1.70020 1.21454 1.45989 1.20514 0.85956 0.79251 0.79580 0.79620 1.21054 1.19873 1.16707 1.17614 0.76983 0.81023 0.86581 1.90673 1.46484 1.72484 1.38155 1.21031 0.94078 1.19630 1.05571 1.23683 0.97416 0.82089 0.86347 1.68948 1.22382 1.23323 1.12997 1.21475 0.79081 0.90841 0.94086 1.21230 1.02971 1.00555 0.92161 1.20894 0.90902 0.90144 0.95644 1.21155 1.06095 0.99278 0.91278 1.21611 1.01667 0.97704 0.93995 1.22854 0.90586 0.96942 0.94522 1.44250 1.09353 1.37423 1.21537 1.16860 0.90221 0.79726 0.80184 1.90889 1.31186 1.56735 1.65092 0.89285 0.91785 0.96240 0.89663 0.93260 0.89769 0.87729 0.93153 0.97121 0.92532 0.79819 0.79272 0.87747 0.87914 0.88841 0.77535 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 11.01 113.37 1.25 2.46 16 2 O -0.40 -14.70 6.50 -148.98 -0.97 -15.67 16 3 C 0.05 1.73 5.56 71.98 0.40 2.13 16 4 C 0.11 4.08 5.72 86.38 0.49 4.57 16 5 N -0.59 -28.13 2.55 -830.80 -2.12 -30.25 16 6 C 0.22 11.83 4.04 85.63 0.35 12.17 16 7 C -0.52 -30.91 8.26 25.60 0.21 -30.70 16 8 H 0.05 3.51 7.34 -2.91 -0.02 3.48 16 9 C 0.02 1.08 5.47 84.65 0.46 1.55 16 10 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 11 Si 0.93 46.45 27.47 68.60 1.88 48.33 16 12 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.24 -11.15 6.54 99.48 0.65 -10.49 16 15 C 0.59 30.88 6.66 86.46 0.58 31.46 16 16 O -0.60 -37.26 16.65 -4.33 -0.07 -37.33 16 17 C -0.39 -16.83 4.14 -19.76 -0.08 -16.92 16 18 C 0.26 9.60 9.31 85.19 0.79 10.39 16 19 N -0.55 -16.43 10.28 -191.74 -1.97 -18.40 16 20 C 0.38 9.11 7.32 133.84 0.98 10.09 16 21 C -0.15 -1.85 9.60 22.40 0.21 -1.64 16 22 C 0.03 0.17 5.88 -19.84 -0.12 0.06 16 23 C -0.12 0.30 10.03 71.24 0.71 1.01 16 24 C -0.13 -0.85 9.69 22.04 0.21 -0.64 16 25 C 0.07 1.28 10.07 83.36 0.84 2.12 16 26 N -0.43 -11.57 2.76 -477.22 -1.32 -12.89 16 27 C 0.52 20.60 7.39 85.02 0.63 21.23 16 28 O -0.56 -25.43 16.15 -4.87 -0.08 -25.51 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 2.02 6.58 -2.39 -0.02 2.01 16 34 H 0.08 2.83 5.91 -2.39 -0.01 2.81 16 35 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.05 2.44 7.13 -2.38 -0.02 2.42 16 37 H 0.01 0.63 6.73 -2.39 -0.02 0.61 16 38 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.19 7.29 4.95 -2.91 -0.01 7.28 16 40 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.10 -0.40 8.14 -2.38 -0.02 -0.42 16 42 H 0.10 -0.58 8.10 -2.38 -0.02 -0.60 16 43 H 0.09 -0.32 8.09 -2.39 -0.02 -0.34 16 44 H 0.21 -0.52 8.06 -2.91 -0.02 -0.54 16 45 H 0.18 3.14 7.32 -2.91 -0.02 3.12 16 Total: -1.00 -96.47 372.64 4.55 -91.92 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.97 Total: 9.72 kcal Atomic # 6 Polarization: 41.42 SS G_CDS: 7.92 Total: 49.34 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -5.11 Total: -120.80 kcal Atomic # 8 Polarization: -77.39 SS G_CDS: -1.12 Total: -78.51 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.88 Total: 48.33 kcal Total: -96.47 4.55 -91.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610491907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.443 kcal (2) G-P(sol) polarization free energy of solvation -96.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds