Wall clock time and date at job start Wed Apr 1 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38284 * 119.92561 * 2 1 4 4 C 1.38111 * 120.06880 * 179.97438 * 3 2 1 5 5 C 1.38876 * 119.92901 * 0.02562 * 4 3 2 6 6 N 1.39919 * 120.06746 * 180.02562 * 5 4 3 7 7 C 1.46498 * 120.00459 * 67.89739 * 6 5 4 8 8 C 1.50700 * 109.47361 * 89.99392 * 7 6 5 9 9 H 1.08003 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00079 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99684 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99931 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.46964 * 89.99830 * 12 10 8 14 14 H 1.48503 * 109.46867 * 210.00102 * 12 10 8 15 15 H 1.48508 * 109.46988 * 329.99931 * 12 10 8 16 16 C 1.34787 * 119.99716 * 247.89040 * 6 5 4 17 17 O 1.21285 * 119.99779 * 4.74366 * 16 6 5 18 18 C 1.50699 * 119.99863 * 184.73645 * 16 6 5 19 19 C 1.52996 * 109.46862 * 180.02562 * 18 16 6 20 20 C 1.53006 * 109.46877 * 180.02562 * 19 18 16 21 21 H 1.08997 * 110.53865 * 55.69802 * 20 19 18 22 22 N 1.47306 * 110.59737 * 292.86755 * 20 19 18 23 23 C 1.34534 * 106.62396 * 241.47471 * 22 20 19 24 24 O 1.21527 * 123.77143 * 180.02562 * 23 22 20 25 25 N 1.33791 * 112.45065 * 0.02562 * 23 22 20 26 26 C 1.35116 * 111.69201 * 359.90826 * 25 23 22 27 27 O 1.21232 * 127.33892 * 180.09750 * 26 25 23 28 28 C 1.38870 * 119.85919 * 0.02562 * 5 4 3 29 29 C 1.38116 * 119.92966 * 359.97438 * 28 5 4 30 30 H 1.08999 * 109.47054 * 90.00449 * 1 2 3 31 31 H 1.09001 * 109.46836 * 210.00051 * 1 2 3 32 32 H 1.08993 * 109.47266 * 330.00021 * 1 2 3 33 33 H 1.08002 * 119.96155 * 0.25625 * 3 2 1 34 34 H 1.08001 * 120.03507 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47006 * 209.99931 * 7 6 5 36 36 H 1.09001 * 109.47034 * 329.99720 * 7 6 5 37 37 H 0.97006 * 119.99299 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.47507 * 300.00748 * 18 16 6 39 39 H 1.09003 * 109.46859 * 60.00756 * 18 16 6 40 40 H 1.09001 * 109.47086 * 299.99547 * 19 18 16 41 41 H 1.08995 * 109.47257 * 60.00261 * 19 18 16 42 42 H 0.97003 * 126.68913 * 61.44222 * 22 20 19 43 43 H 0.97004 * 124.17210 * 180.02562 * 25 23 22 44 44 H 1.08003 * 120.03678 * 179.97438 * 28 5 4 45 45 H 1.08004 * 119.96585 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6731 0.0002 0.0016 7 6 6.4048 0.4771 1.1778 8 6 6.6553 -0.6760 2.1153 9 1 6.3049 -1.6652 1.8602 10 6 7.3317 -0.4680 3.2985 11 7 7.5507 -1.4744 4.1163 12 14 7.9371 1.2431 3.7400 13 1 6.8842 1.9587 4.5045 14 1 9.1643 1.1353 4.5694 15 1 8.2442 1.9956 2.4971 16 6 6.3479 -0.4386 -1.0795 17 8 5.7453 -0.7524 -2.0842 18 6 7.8510 -0.5392 -1.0400 19 6 8.3628 -1.0593 -2.3847 20 6 9.8889 -1.1620 -2.3443 21 1 10.2082 -1.7858 -1.5095 22 7 10.4962 0.1769 -2.2527 23 6 11.2495 0.3341 -3.3562 24 8 11.8939 1.3359 -3.5972 25 7 11.2099 -0.7357 -4.1586 26 6 10.4207 -1.7095 -3.6541 27 8 10.1857 -2.7932 -4.1440 28 6 3.5782 -1.2017 -0.0005 29 6 2.1970 -1.1984 -0.0011 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5138 33 1 1.6551 2.1327 0.0042 34 1 4.1163 2.1383 0.0001 35 1 7.3574 0.9043 0.8646 36 1 5.8153 1.2388 1.6882 37 1 8.0263 -1.3280 4.9490 38 1 8.2761 0.4456 -0.8460 39 1 8.1484 -1.2259 -0.2474 40 1 7.9378 -2.0440 -2.5790 41 1 8.0654 -0.3724 -3.1770 42 1 10.3760 0.8201 -1.5366 43 1 11.6901 -0.8049 -4.9986 44 1 4.1165 -2.1380 -0.0010 45 1 1.6553 -2.1327 -0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726942065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:05 Heat of formation + Delta-G solvation = -59.125548 kcal Electronic energy + Delta-G solvation = -29908.632664 eV Core-core repulsion = 25698.700392 eV Total energy + Delta-G solvation = -4209.932272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46926 -40.09815 -38.77589 -38.38122 -36.56136 -35.45052 -34.65488 -32.93230 -32.28548 -31.44932 -30.64335 -28.26169 -28.05645 -25.96792 -23.76150 -23.00246 -22.71978 -22.08629 -21.58554 -20.96201 -18.85105 -18.52360 -17.26476 -17.11521 -17.01049 -16.62696 -16.35146 -15.81660 -15.70853 -15.38516 -15.10869 -14.96576 -14.44138 -14.33342 -14.04447 -13.89283 -13.63169 -13.38770 -13.13551 -12.83514 -12.61653 -12.55943 -12.19638 -12.13141 -11.87003 -11.65131 -11.42458 -11.17562 -11.14124 -11.00138 -10.84444 -10.73992 -10.57876 -10.41710 -10.41043 -9.78358 -9.67137 -9.42329 -8.85094 -8.60129 -8.58806 -7.72664 -6.33720 -4.36755 1.40669 1.60921 1.74765 2.25089 2.82452 2.95078 3.07156 3.07747 3.13549 3.18129 3.52648 3.83677 4.06082 4.14460 4.49998 4.70668 4.96011 5.02411 5.07049 5.10262 5.25636 5.27164 5.28397 5.33929 5.50228 5.65885 5.70886 5.74012 5.81587 5.82639 5.97917 6.01884 6.02731 6.19230 6.31724 6.37892 6.45922 6.57385 6.61595 6.72346 6.85548 6.88997 7.05128 7.18756 7.28470 7.47292 7.87255 7.96062 8.22987 8.65457 8.73634 9.24109 10.78437 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.003562 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.294636 B = 7859.732391 C = 9900.290527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.114 4.114 4 C -0.123 4.123 5 C 0.167 3.833 6 N -0.555 5.555 7 C 0.210 3.790 8 C -0.543 4.543 9 H 0.080 0.920 10 C 0.080 3.920 11 N -0.886 5.886 12 Si 0.869 3.131 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.264 1.264 16 C 0.524 3.476 17 O -0.554 6.554 18 C -0.136 4.136 19 C -0.102 4.102 20 C 0.090 3.910 21 H 0.137 0.863 22 N -0.718 5.718 23 C 0.705 3.295 24 O -0.550 6.550 25 N -0.683 5.683 26 C 0.532 3.468 27 O -0.462 6.462 28 C -0.097 4.097 29 C -0.112 4.112 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.268 0.732 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.443 0.557 43 H 0.431 0.569 44 H 0.122 0.878 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 3.211 -9.542 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.143 4.143 5 C 0.076 3.924 6 N -0.282 5.282 7 C 0.090 3.910 8 C -0.581 4.581 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.523 5.523 12 Si 0.696 3.304 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.314 3.686 17 O -0.432 6.432 18 C -0.175 4.175 19 C -0.141 4.141 20 C -0.018 4.018 21 H 0.155 0.845 22 N -0.384 5.384 23 C 0.404 3.596 24 O -0.424 6.424 25 N -0.354 5.354 26 C 0.317 3.683 27 O -0.331 6.331 28 C -0.116 4.116 29 C -0.130 4.130 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.289 0.711 43 H 0.273 0.727 44 H 0.140 0.860 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.526 2.916 -10.186 10.704 hybrid contribution 0.646 1.092 0.688 1.443 sum -0.879 4.007 -9.498 10.346 Atomic orbital electron populations 1.20727 0.91549 1.02415 1.01849 1.19825 0.95765 0.93227 1.01412 1.20761 0.93442 0.97334 1.01747 1.21145 0.94250 0.97275 1.01585 1.17512 0.83219 0.92920 0.98773 1.45594 1.03367 1.62790 1.16458 1.19954 0.91731 0.96283 0.83065 1.21289 1.37860 0.95690 1.03310 0.90192 1.24844 0.95200 0.96672 0.95760 1.69880 1.40469 1.30873 1.11075 0.86968 0.79162 0.84937 0.79376 1.19861 1.20746 1.18857 1.20430 0.89906 0.76190 0.82095 1.90668 1.70758 1.50023 1.31785 1.21628 0.92802 1.04318 0.98775 1.21564 0.89078 1.04858 0.98572 1.22262 0.96696 0.85161 0.97725 0.84530 1.45646 1.49916 1.19009 1.23782 1.15842 0.80315 0.82675 0.80763 1.91049 1.46162 1.29359 1.75855 1.44408 1.48024 1.17511 1.25456 1.20891 0.77314 0.83634 0.86435 1.90856 1.57486 1.19498 1.65239 1.21227 0.94034 0.97725 0.98656 1.20843 0.93609 0.97395 1.01179 0.91608 0.91781 0.91876 0.86259 0.86213 0.94380 0.95003 0.92209 0.89137 0.86351 0.88306 0.90179 0.71144 0.72727 0.86030 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.10 -1.44 5.88 -104.59 -0.62 -2.06 16 3 C -0.11 -1.65 9.69 -39.61 -0.38 -2.04 16 4 C -0.12 -2.05 9.69 -39.39 -0.38 -2.43 16 5 C 0.17 3.15 4.75 -83.70 -0.40 2.75 16 6 N -0.55 -10.63 2.51 -114.74 -0.29 -10.92 16 7 C 0.21 4.23 3.95 -5.19 -0.02 4.21 16 8 C -0.54 -13.14 9.71 -34.44 -0.33 -13.47 16 9 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 10 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 11 N -0.89 -24.22 13.96 55.43 0.77 -23.45 16 12 Si 0.87 18.41 27.47 -169.99 -4.67 13.74 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 15 H -0.26 -5.10 6.54 56.52 0.37 -4.73 16 16 C 0.52 9.47 7.53 -10.98 -0.08 9.39 16 17 O -0.55 -11.20 15.74 5.55 0.09 -11.11 16 18 C -0.14 -1.87 4.28 -27.89 -0.12 -1.99 16 19 C -0.10 -1.20 4.26 -26.73 -0.11 -1.32 16 20 C 0.09 0.87 3.67 -68.20 -0.25 0.62 16 21 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 22 N -0.72 -6.83 5.98 -59.19 -0.35 -7.18 16 23 C 0.70 7.93 9.00 -88.01 -0.79 7.14 16 24 O -0.55 -8.08 18.04 5.34 0.10 -7.99 16 25 N -0.68 -6.42 5.71 -15.71 -0.09 -6.51 16 26 C 0.53 5.66 8.17 -10.39 -0.08 5.57 16 27 O -0.46 -6.21 18.02 5.60 0.10 -6.11 16 28 C -0.10 -1.77 9.55 -39.39 -0.38 -2.15 16 29 C -0.11 -1.73 9.69 -39.61 -0.38 -2.11 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.04 0.70 5.53 -51.93 -0.29 0.42 16 36 H 0.03 0.65 7.29 -51.93 -0.38 0.27 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.09 1.09 6.58 -51.93 -0.34 0.75 16 39 H 0.12 1.72 7.91 -51.93 -0.41 1.31 16 40 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.44 3.71 8.45 -40.82 -0.34 3.36 16 43 H 0.43 3.15 8.96 -40.82 -0.37 2.78 16 44 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 45 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -32.53 385.46 -8.54 -41.08 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.94 Total: 9.40 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -4.07 Total: 3.24 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.04 Total: -48.06 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: 0.28 Total: -25.20 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.67 Total: 13.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.53 -8.54 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726942065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.050 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds