Wall clock time and date at job start Wed Apr 1 2020 02:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38284 * 119.92561 * 2 1 4 4 C 1.38111 * 120.06880 * 179.97438 * 3 2 1 5 5 C 1.38876 * 119.92901 * 0.02562 * 4 3 2 6 6 N 1.39919 * 120.06746 * 180.02562 * 5 4 3 7 7 C 1.46498 * 120.00459 * 67.89739 * 6 5 4 8 8 C 1.50700 * 109.47361 * 89.99392 * 7 6 5 9 9 H 1.08003 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00079 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99684 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99931 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.46964 * 89.99830 * 12 10 8 14 14 H 1.48503 * 109.46867 * 210.00102 * 12 10 8 15 15 H 1.48508 * 109.46988 * 329.99931 * 12 10 8 16 16 C 1.34787 * 119.99716 * 247.89040 * 6 5 4 17 17 O 1.21285 * 119.99779 * 4.74366 * 16 6 5 18 18 C 1.50699 * 119.99863 * 184.73645 * 16 6 5 19 19 C 1.52996 * 109.46862 * 180.02562 * 18 16 6 20 20 C 1.53006 * 109.46877 * 180.02562 * 19 18 16 21 21 H 1.08997 * 110.53865 * 55.69802 * 20 19 18 22 22 N 1.47306 * 110.59737 * 292.86755 * 20 19 18 23 23 C 1.34534 * 106.62396 * 241.47471 * 22 20 19 24 24 O 1.21527 * 123.77143 * 180.02562 * 23 22 20 25 25 N 1.33791 * 112.45065 * 0.02562 * 23 22 20 26 26 C 1.35116 * 111.69201 * 359.90826 * 25 23 22 27 27 O 1.21232 * 127.33892 * 180.09750 * 26 25 23 28 28 C 1.38870 * 119.85919 * 0.02562 * 5 4 3 29 29 C 1.38116 * 119.92966 * 359.97438 * 28 5 4 30 30 H 1.08999 * 109.47054 * 90.00449 * 1 2 3 31 31 H 1.09001 * 109.46836 * 210.00051 * 1 2 3 32 32 H 1.08993 * 109.47266 * 330.00021 * 1 2 3 33 33 H 1.08002 * 119.96155 * 0.25625 * 3 2 1 34 34 H 1.08001 * 120.03507 * 179.97438 * 4 3 2 35 35 H 1.08996 * 109.47006 * 209.99931 * 7 6 5 36 36 H 1.09001 * 109.47034 * 329.99720 * 7 6 5 37 37 H 0.97006 * 119.99299 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.47507 * 300.00748 * 18 16 6 39 39 H 1.09003 * 109.46859 * 60.00756 * 18 16 6 40 40 H 1.09001 * 109.47086 * 299.99547 * 19 18 16 41 41 H 1.08995 * 109.47257 * 60.00261 * 19 18 16 42 42 H 0.97003 * 126.68913 * 61.44222 * 22 20 19 43 43 H 0.97004 * 124.17210 * 180.02562 * 25 23 22 44 44 H 1.08003 * 120.03678 * 179.97438 * 28 5 4 45 45 H 1.08004 * 119.96585 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6731 0.0002 0.0016 7 6 6.4048 0.4771 1.1778 8 6 6.6553 -0.6760 2.1153 9 1 6.3049 -1.6652 1.8602 10 6 7.3317 -0.4680 3.2985 11 7 7.5507 -1.4744 4.1163 12 14 7.9371 1.2431 3.7400 13 1 6.8842 1.9587 4.5045 14 1 9.1643 1.1353 4.5694 15 1 8.2442 1.9956 2.4971 16 6 6.3479 -0.4386 -1.0795 17 8 5.7453 -0.7524 -2.0842 18 6 7.8510 -0.5392 -1.0400 19 6 8.3628 -1.0593 -2.3847 20 6 9.8889 -1.1620 -2.3443 21 1 10.2082 -1.7858 -1.5095 22 7 10.4962 0.1769 -2.2527 23 6 11.2495 0.3341 -3.3562 24 8 11.8939 1.3359 -3.5972 25 7 11.2099 -0.7357 -4.1586 26 6 10.4207 -1.7095 -3.6541 27 8 10.1857 -2.7932 -4.1440 28 6 3.5782 -1.2017 -0.0005 29 6 2.1970 -1.1984 -0.0011 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5138 33 1 1.6551 2.1327 0.0042 34 1 4.1163 2.1383 0.0001 35 1 7.3574 0.9043 0.8646 36 1 5.8153 1.2388 1.6882 37 1 8.0263 -1.3280 4.9490 38 1 8.2761 0.4456 -0.8460 39 1 8.1484 -1.2259 -0.2474 40 1 7.9378 -2.0440 -2.5790 41 1 8.0654 -0.3724 -3.1770 42 1 10.3760 0.8201 -1.5366 43 1 11.6901 -0.8049 -4.9986 44 1 4.1165 -2.1380 -0.0010 45 1 1.6553 -2.1327 -0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726942065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:04 Heat of formation + Delta-G solvation = -82.207346 kcal Electronic energy + Delta-G solvation = -29909.633566 eV Core-core repulsion = 25698.700392 eV Total energy + Delta-G solvation = -4210.933174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.36491 -41.46782 -39.76270 -39.62933 -37.55868 -36.91542 -35.63169 -34.65989 -33.44358 -32.60542 -31.88040 -29.88856 -29.13423 -27.07229 -24.94846 -24.41366 -23.67828 -23.47231 -22.55269 -22.07060 -20.18857 -19.43206 -19.07199 -18.40452 -17.98298 -17.77417 -17.51492 -16.90894 -16.83408 -16.51563 -16.31140 -16.09826 -16.00265 -15.40724 -15.27025 -15.04127 -14.80208 -14.54842 -14.36200 -14.30964 -13.85893 -13.77470 -13.68515 -13.21463 -13.00289 -12.93769 -12.73173 -12.49141 -12.41133 -12.20743 -12.07258 -12.01699 -11.87865 -11.66629 -11.50413 -11.39246 -10.89491 -10.74126 -10.53936 -9.99001 -9.85569 -9.09340 -8.26652 -6.34682 0.35469 0.48915 0.49912 1.42107 1.43042 1.45299 1.53536 1.65119 1.92986 2.08384 2.21263 2.36779 2.80735 2.93503 3.07682 3.45057 3.82672 3.93511 3.95462 4.05549 4.09192 4.16574 4.25136 4.36365 4.47027 4.50908 4.54977 4.65570 4.81334 4.84026 4.86303 4.91194 4.95558 5.07928 5.12775 5.14388 5.18143 5.40002 5.42241 5.58916 5.68338 5.77319 5.78073 5.84808 6.11892 6.23415 6.34718 6.53608 6.71039 7.10979 7.22188 7.33458 8.89085 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.003562 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.294636 B = 7859.732391 C = 9900.290527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C -0.111 4.111 4 C -0.133 4.133 5 C 0.128 3.872 6 N -0.559 5.559 7 C 0.217 3.783 8 C -0.536 4.536 9 H 0.030 0.970 10 C 0.024 3.976 11 N -0.940 5.940 12 Si 0.935 3.065 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.224 1.224 16 C 0.515 3.485 17 O -0.581 6.581 18 C -0.129 4.129 19 C -0.091 4.091 20 C 0.100 3.900 21 H 0.159 0.841 22 N -0.705 5.705 23 C 0.708 3.292 24 O -0.582 6.582 25 N -0.670 5.670 26 C 0.539 3.461 27 O -0.490 6.490 28 C -0.127 4.127 29 C -0.119 4.119 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.268 0.732 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.451 0.549 43 H 0.441 0.559 44 H 0.096 0.904 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 5.893 -9.880 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.153 4.153 5 C 0.038 3.962 6 N -0.286 5.286 7 C 0.096 3.904 8 C -0.575 4.575 9 H 0.049 0.951 10 C -0.175 4.175 11 N -0.579 5.579 12 Si 0.758 3.242 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.146 1.146 16 C 0.306 3.694 17 O -0.462 6.462 18 C -0.168 4.168 19 C -0.130 4.130 20 C -0.009 4.009 21 H 0.177 0.823 22 N -0.370 5.370 23 C 0.407 3.593 24 O -0.459 6.459 25 N -0.341 5.341 26 C 0.325 3.675 27 O -0.360 6.360 28 C -0.147 4.147 29 C -0.138 4.138 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.298 0.702 43 H 0.284 0.716 44 H 0.114 0.886 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.105 5.607 -10.547 12.129 hybrid contribution 0.655 0.149 0.770 1.022 sum -1.449 5.756 -9.777 11.438 Atomic orbital electron populations 1.20803 0.88402 1.03840 1.03215 1.20316 0.98006 0.92398 0.99178 1.21220 0.92777 0.98993 0.99981 1.21395 0.95441 0.96816 1.01610 1.17886 0.83392 0.93991 1.00937 1.45637 1.03808 1.62912 1.16222 1.19820 0.93152 0.94566 0.82816 1.21392 1.36830 0.95046 1.04223 0.95118 1.25709 0.95395 1.00929 0.95465 1.70049 1.42275 1.33737 1.11878 0.85914 0.78077 0.79776 0.80480 1.20153 1.21128 1.14642 1.21169 0.91521 0.75274 0.81442 1.90638 1.71761 1.51064 1.32710 1.21643 0.89907 1.05658 0.99590 1.21395 0.90407 1.03896 0.97290 1.22189 0.95069 0.85504 0.98138 0.82347 1.45590 1.49057 1.18934 1.23461 1.15864 0.80048 0.82359 0.80994 1.91037 1.47651 1.30643 1.76582 1.44269 1.47547 1.16677 1.25651 1.20885 0.76979 0.83205 0.86406 1.90855 1.58530 1.20710 1.65949 1.21257 0.95536 0.96898 1.00993 1.21136 0.92596 0.99278 1.00740 0.90090 0.90878 0.90027 0.82718 0.84904 0.91479 0.94523 0.92330 0.86503 0.87008 0.89650 0.90554 0.70191 0.71551 0.88600 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.24 0.71 -1.13 16 2 C -0.10 -2.59 5.88 -19.84 -0.12 -2.71 16 3 C -0.11 -2.95 9.69 22.25 0.22 -2.74 16 4 C -0.13 -4.28 9.69 22.39 0.22 -4.07 16 5 C 0.13 4.94 4.75 38.15 0.18 5.12 16 6 N -0.56 -21.61 2.51 -635.31 -1.59 -23.20 16 7 C 0.22 8.53 3.95 85.63 0.34 8.87 16 8 C -0.54 -26.51 9.71 25.60 0.25 -26.26 16 9 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 10 C 0.02 1.23 5.47 84.66 0.46 1.69 16 11 N -0.94 -52.98 13.96 21.45 0.30 -52.68 16 12 Si 0.93 36.73 27.47 68.60 1.88 38.62 16 13 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.29 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.22 -7.31 6.54 99.48 0.65 -6.66 16 16 C 0.51 18.81 7.53 87.66 0.66 19.47 16 17 O -0.58 -24.16 15.74 -3.04 -0.05 -24.21 16 18 C -0.13 -3.45 4.28 29.85 0.13 -3.32 16 19 C -0.09 -2.09 4.26 30.59 0.13 -1.96 16 20 C 0.10 1.76 3.67 44.38 0.16 1.92 16 21 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 22 N -0.71 -11.81 5.98 -459.61 -2.75 -14.56 16 23 C 0.71 14.71 9.00 179.44 1.61 16.32 16 24 O -0.58 -16.29 18.04 -3.80 -0.07 -16.36 16 25 N -0.67 -11.65 5.71 -440.68 -2.52 -14.17 16 26 C 0.54 10.84 8.17 87.89 0.72 11.56 16 27 O -0.49 -12.90 18.02 -2.88 -0.05 -12.95 16 28 C -0.13 -4.89 9.55 22.39 0.21 -4.68 16 29 C -0.12 -3.69 9.69 22.25 0.22 -3.47 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 33 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 35 H 0.07 2.26 5.53 -2.39 -0.01 2.25 16 36 H 0.04 1.43 7.29 -2.39 -0.02 1.41 16 37 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 38 H 0.12 2.49 6.58 -2.39 -0.02 2.47 16 39 H 0.11 3.21 7.91 -2.39 -0.02 3.19 16 40 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 41 H 0.08 1.84 8.10 -2.39 -0.02 1.82 16 42 H 0.45 6.23 8.45 -92.71 -0.78 5.44 16 43 H 0.44 5.88 8.96 -92.71 -0.83 5.05 16 44 H 0.10 4.01 8.06 -2.91 -0.02 3.98 16 45 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -74.15 385.46 0.64 -73.51 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.62 Total: 31.36 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.10 Total: 14.64 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -6.56 Total: -104.61 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.17 Total: -53.52 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 1.88 Total: 38.62 kcal Total: -74.15 0.64 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726942065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.699 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds