Wall clock time and date at job start Wed Apr 1 2020 03:01:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.34915 * 119.46129 * 2 1
4 4 C 1.41702 * 121.12124 * 359.97438 * 3 2 1
5 5 O 1.21755 * 120.00013 * 256.04627 * 4 3 2
6 6 N 1.34779 * 120.00079 * 76.05453 * 4 3 2
7 7 C 1.46503 * 119.99983 * 185.56328 * 6 4 3
8 8 C 1.46500 * 119.99925 * 5.55338 * 6 4 3
9 9 C 1.51521 * 117.75633 * 180.02562 * 3 2 1
10 10 H 1.08998 * 107.95685 * 238.15850 * 9 3 2
11 11 C 1.50698 * 107.95288 * 121.88877 * 9 3 2
12 12 C 1.38327 * 119.96668 * 285.11888 * 11 9 3
13 13 C 1.38277 * 120.14204 * 179.97438 * 12 11 9
14 14 C 1.38122 * 120.06797 * 359.97438 * 13 12 11
15 15 C 1.38867 * 119.92898 * 0.02562 * 14 13 12
16 16 O 1.35749 * 120.06527 * 179.97438 * 15 14 13
17 17 C 1.34824 * 117.00407 * 5.61185 * 16 15 14
18 18 H 1.08005 * 119.99937 * 354.92746 * 17 16 15
19 19 C 1.38655 * 120.00068 * 174.92998 * 17 16 15
20 20 N 1.31566 * 119.99741 * 179.97438 * 19 17 16
21 21 Si 1.86795 * 120.00195 * 0.02562 * 19 17 16
22 22 H 1.48508 * 109.47101 * 89.99790 * 21 19 17
23 23 H 1.48496 * 109.47133 * 209.99761 * 21 19 17
24 24 H 1.48506 * 109.47021 * 329.99940 * 21 19 17
25 25 C 1.38078 * 119.96587 * 105.35375 * 11 9 3
26 26 N 1.47259 * 116.95044 * 0.02562 * 9 3 2
27 27 C 1.34777 * 118.41513 * 359.97240 * 26 9 3
28 28 O 1.21565 * 118.93377 * 180.02562 * 27 26 9
29 29 N 1.33898 * 122.13255 * 0.03080 * 27 26 9
30 30 H 1.08999 * 109.47526 * 94.87841 * 1 2 3
31 31 H 1.08999 * 109.46835 * 214.87929 * 1 2 3
32 32 H 1.09001 * 109.46971 * 334.87370 * 1 2 3
33 33 H 1.09001 * 109.47000 * 89.99098 * 7 6 4
34 34 H 1.08998 * 109.46788 * 209.99410 * 7 6 4
35 35 H 1.09000 * 109.46903 * 329.99670 * 7 6 4
36 36 H 1.09001 * 109.46918 * 5.16948 * 8 6 4
37 37 H 1.09002 * 109.46610 * 125.16917 * 8 6 4
38 38 H 1.08994 * 109.47563 * 245.16499 * 8 6 4
39 39 H 1.08004 * 119.92606 * 0.02562 * 12 11 9
40 40 H 1.07994 * 119.96874 * 180.02562 * 13 12 11
41 41 H 1.07997 * 120.03865 * 180.02562 * 14 13 12
42 42 H 0.97000 * 119.99798 * 180.02562 * 20 19 17
43 43 H 1.08000 * 120.03791 * 0.04489 * 25 11 9
44 44 H 0.96998 * 120.79576 * 179.97438 * 26 9 3
45 45 H 0.97009 * 118.16476 * 180.02562 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1706 1.1747 0.0000
4 6 1.4746 2.4090 -0.0005
5 8 1.3974 3.0639 -1.0240
6 7 0.8981 2.8581 1.1319
7 6 0.0765 4.0707 1.1046
8 6 1.0929 2.1335 2.3902
9 6 3.6851 1.1296 -0.0006
10 1 4.0376 1.6662 0.8802
11 6 4.1715 1.8730 -1.2179
12 6 4.0693 1.2919 -2.4690
13 6 4.5139 1.9711 -3.5884
14 6 5.0612 3.2327 -3.4604
15 6 5.1652 3.8188 -2.2058
16 8 5.7032 5.0585 -2.0768
17 6 6.0101 5.7141 -3.2142
18 1 5.9024 5.2196 -4.1683
19 6 6.4639 7.0231 -3.1590
20 7 6.7638 7.6627 -4.2690
21 14 6.6508 7.8781 -1.5088
22 1 8.0193 7.6437 -0.9820
23 1 6.4291 9.3366 -1.6790
24 1 5.6526 7.3338 -0.5534
25 6 4.7231 3.1316 -1.0826
26 7 4.3132 -0.2023 -0.0017
27 6 3.5145 -1.2880 -0.0016
28 8 4.0230 -2.3922 -0.0020
29 7 2.1791 -1.1898 -0.0011
30 1 -0.3634 -0.0874 -1.0239
31 1 -0.3633 -0.8431 0.5877
32 1 -0.3633 0.9304 0.4364
33 1 -0.9600 3.8028 0.8993
34 1 0.1376 4.5728 2.0701
35 1 0.4405 4.7387 0.3239
36 1 1.8004 1.3190 2.2346
37 1 1.4842 2.8154 3.1452
38 1 0.1393 1.7272 2.7270
39 1 3.6405 0.3060 -2.5718
40 1 4.4324 1.5149 -4.5639
41 1 5.4080 3.7629 -4.3351
42 1 7.0816 8.5783 -4.2304
43 1 4.8068 3.5830 -0.1050
44 1 5.2786 -0.2962 -0.0025
45 1 1.6598 -2.0091 -0.0006
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000731427616.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:44
Heat of formation + Delta-G solvation = -48.870504 kcal
Electronic energy + Delta-G solvation = -31154.508755 eV
Core-core repulsion = 26945.021175 eV
Total energy + Delta-G solvation = -4209.487580 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.64165 -40.91436 -40.77156 -38.73239 -37.94912 -36.43089 -36.05617 -34.46042
-33.39848 -32.05037 -30.86783 -29.89516 -28.67177 -27.44635 -27.03323 -25.78643
-24.07998 -23.45892 -22.33450 -22.08506 -19.75095 -19.50531 -19.29498 -18.95810
-18.06187 -17.37372 -17.14321 -16.96652 -16.79635 -16.61084 -16.33508 -16.19359
-15.89451 -15.65364 -15.28846 -14.85567 -14.58698 -14.39575 -14.28646 -14.23860
-14.12988 -13.92188 -13.56521 -13.31913 -13.27122 -13.18922 -12.93024 -12.84014
-12.63533 -12.55755 -12.39172 -12.29317 -11.97843 -11.62251 -11.37068 -11.11190
-10.92355 -10.59821 -9.76925 -9.58877 -9.15680 -9.05760 -8.50979 -6.24148
0.23763 0.52996 0.64676 1.28876 1.34304 1.43059 1.49930 1.54660
1.92581 2.27041 2.28772 2.48792 2.76173 2.94855 3.16087 3.40307
3.66370 3.78899 3.95883 4.13302 4.24083 4.26733 4.32854 4.44695
4.46946 4.50314 4.59784 4.60543 4.61707 4.72796 4.83101 4.90752
4.97590 5.00076 5.02263 5.11220 5.18569 5.34306 5.55189 5.60324
5.65940 5.71722 5.75733 5.85250 5.88299 6.18632 6.34453 6.39241
6.82898 7.18839 7.22850 7.56189 8.60922
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.012326 B = 0.003735 C = 0.003194
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2271.036583 B = 7495.120339 C = 8765.389226
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.206 3.794
3 C -0.279 4.279
4 C 0.585 3.415
5 O -0.566 6.566
6 N -0.616 5.616
7 C 0.081 3.919
8 C 0.072 3.928
9 C 0.252 3.748
10 H 0.096 0.904
11 C -0.053 4.053
12 C -0.154 4.154
13 C -0.078 4.078
14 C -0.232 4.232
15 C 0.125 3.875
16 O -0.243 6.243
17 C -0.400 4.400
18 H 0.078 0.922
19 C 0.010 3.990
20 N -0.924 5.924
21 Si 0.971 3.029
22 H -0.262 1.262
23 H -0.266 1.266
24 H -0.265 1.265
25 C -0.168 4.168
26 N -0.701 5.701
27 C 0.709 3.291
28 O -0.607 6.607
29 N -0.637 5.637
30 H 0.094 0.906
31 H 0.119 0.881
32 H 0.088 0.912
33 H 0.071 0.929
34 H 0.095 0.905
35 H 0.045 0.955
36 H 0.078 0.922
37 H 0.075 0.925
38 H 0.088 0.912
39 H 0.121 0.879
40 H 0.135 0.865
41 H 0.108 0.892
42 H 0.285 0.715
43 H 0.124 0.876
44 H 0.435 0.565
45 H 0.438 0.562
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.125 -16.944 17.947 30.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.102 3.898
3 C -0.290 4.290
4 C 0.373 3.627
5 O -0.445 6.445
6 N -0.349 5.349
7 C -0.061 4.061
8 C -0.070 4.070
9 C 0.146 3.854
10 H 0.113 0.887
11 C -0.054 4.054
12 C -0.173 4.173
13 C -0.096 4.096
14 C -0.252 4.252
15 C 0.076 3.924
16 O -0.151 6.151
17 C -0.477 4.477
18 H 0.095 0.905
19 C -0.188 4.188
20 N -0.564 5.564
21 Si 0.793 3.207
22 H -0.187 1.187
23 H -0.191 1.191
24 H -0.189 1.189
25 C -0.187 4.187
26 N -0.360 5.360
27 C 0.409 3.591
28 O -0.486 6.486
29 N -0.281 5.281
30 H 0.112 0.888
31 H 0.138 0.862
32 H 0.106 0.894
33 H 0.089 0.911
34 H 0.114 0.886
35 H 0.064 0.936
36 H 0.097 0.903
37 H 0.094 0.906
38 H 0.106 0.894
39 H 0.138 0.862
40 H 0.153 0.847
41 H 0.126 0.874
42 H 0.095 0.905
43 H 0.142 0.858
44 H 0.277 0.723
45 H 0.279 0.721
Dipole moment (debyes) X Y Z Total
from point charges -16.761 -16.781 17.544 29.501
hybrid contribution 0.790 0.739 -0.603 1.238
sum -15.971 -16.042 16.941 28.274
Atomic orbital electron populations
1.21282 0.85653 1.06334 1.05440 1.20018 0.95440 0.83756 0.90544
1.19330 0.93270 0.93387 1.22988 1.16337 0.78272 0.84714 0.83345
1.90932 1.60599 1.58807 1.34136 1.47904 1.50315 1.27727 1.08976
1.21724 0.94694 0.86289 1.03415 1.22065 1.03567 0.97460 0.83898
1.18320 0.89600 0.82310 0.95214 0.88658 1.19848 0.96654 0.93168
0.95759 1.20545 1.04704 1.00318 0.91759 1.21017 0.96051 0.92972
0.99520 1.21285 1.08474 0.98312 0.97083 1.19500 0.92862 0.85250
0.94765 1.83497 1.72294 1.25875 1.33428 1.20699 1.45230 0.97073
0.84665 0.90457 1.25293 0.95494 0.95623 1.02388 1.69738 1.44814
1.13204 1.28693 0.85211 0.79585 0.77528 0.78342 1.18694 1.19051
1.18896 1.20106 1.06082 0.96086 0.96447 1.45297 1.10013 1.03209
1.77480 1.15752 0.81938 0.84295 0.77106 1.91030 1.73244 1.25783
1.58582 1.41952 1.04897 1.09459 1.71820 0.88789 0.86244 0.89358
0.91050 0.88615 0.93634 0.90323 0.90640 0.89396 0.86151 0.84741
0.87420 0.90543 0.85840 0.72265 0.72078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.03 9.68 71.24 0.69 -0.34 16
2 C 0.21 3.01 6.30 41.04 0.26 3.27 16
3 C -0.28 -6.00 3.05 -19.51 -0.06 -6.06 16
4 C 0.59 15.09 5.28 85.10 0.45 15.54 16
5 O -0.57 -21.28 16.11 -4.52 -0.07 -21.35 16
6 N -0.62 -10.98 2.61 -882.55 -2.31 -13.29 16
7 C 0.08 1.35 10.52 127.77 1.34 2.70 16
8 C 0.07 0.65 9.87 127.77 1.26 1.91 16
9 C 0.25 6.05 3.36 43.62 0.15 6.20 16
10 H 0.10 2.07 7.81 -2.39 -0.02 2.06 16
11 C -0.05 -1.76 3.97 -19.88 -0.08 -1.84 16
12 C -0.15 -5.34 9.27 22.30 0.21 -5.13 16
13 C -0.08 -3.03 10.04 22.25 0.22 -2.80 16
14 C -0.23 -11.11 9.17 22.39 0.21 -10.90 16
15 C 0.13 6.26 6.65 22.58 0.15 6.41 16
16 O -0.24 -13.85 8.59 -22.68 -0.19 -14.05 16
17 C -0.40 -24.63 9.95 67.92 0.68 -23.95 16
18 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16
19 C 0.01 0.61 5.49 84.83 0.47 1.08 16
20 N -0.92 -56.70 13.96 21.61 0.30 -56.40 16
21 Si 0.97 46.62 28.62 68.60 1.96 48.58 16
22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16
23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16
24 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16
25 C -0.17 -6.85 9.59 22.39 0.21 -6.64 16
26 N -0.70 -15.15 4.99 -462.94 -2.31 -17.46 16
27 C 0.71 15.36 8.63 179.33 1.55 16.90 16
28 O -0.61 -17.13 17.94 -3.92 -0.07 -17.20 16
29 N -0.64 -9.22 5.14 -313.40 -1.61 -10.83 16
30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16
32 H 0.09 0.82 5.78 -2.39 -0.01 0.81 16
33 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16
34 H 0.10 1.05 8.07 -2.39 -0.02 1.03 16
35 H 0.04 1.11 7.35 -2.39 -0.02 1.10 16
36 H 0.08 0.75 6.02 -2.39 -0.01 0.73 16
37 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16
38 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16
39 H 0.12 3.66 8.03 -2.91 -0.02 3.64 16
40 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16
41 H 0.11 5.60 5.64 -2.91 -0.02 5.59 16
42 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16
43 H 0.12 4.68 7.93 -2.91 -0.02 4.66 16
44 H 0.44 8.96 8.93 -92.71 -0.83 8.14 16
45 H 0.44 3.91 8.65 -92.70 -0.80 3.11 16
Total: -1.00 -84.81 376.82 2.84 -81.97
By element:
Atomic # 1 Polarization: 24.24 SS G_CDS: -0.56 Total: 23.68 kcal
Atomic # 6 Polarization: -11.36 SS G_CDS: 7.70 Total: -3.66 kcal
Atomic # 7 Polarization: -92.05 SS G_CDS: -5.92 Total: -97.97 kcal
Atomic # 8 Polarization: -52.26 SS G_CDS: -0.34 Total: -52.60 kcal
Atomic # 14 Polarization: 46.62 SS G_CDS: 1.96 Total: 48.58 kcal
Total: -84.81 2.84 -81.97 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731427616.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.097 kcal
(2) G-P(sol) polarization free energy of solvation -84.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.709 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.968 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.871 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds