Wall clock time and date at job start Wed Apr 1 2020 03:01:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.34852 * 119.47047 * 2 1
4 4 C 1.41695 * 121.08305 * 0.04506 * 3 2 1
5 5 O 1.21750 * 119.99954 * 98.61844 * 4 3 2
6 6 N 1.34772 * 120.00275 * 278.61881 * 4 3 2
7 7 C 1.46501 * 120.00447 * 184.42824 * 6 4 3
8 8 C 1.46502 * 120.00019 * 4.43221 * 6 4 3
9 9 C 1.51526 * 117.79426 * 179.97438 * 3 2 1
10 10 H 1.08995 * 107.94663 * 121.85072 * 9 3 2
11 11 C 1.50700 * 107.95281 * 238.12255 * 9 3 2
12 12 C 1.38322 * 119.96914 * 87.92309 * 11 9 3
13 13 C 1.38275 * 120.14008 * 179.97438 * 12 11 9
14 14 C 1.38127 * 120.06698 * 359.97438 * 13 12 11
15 15 C 1.38861 * 119.93176 * 0.02562 * 14 13 12
16 16 O 1.35743 * 120.06545 * 180.02562 * 15 14 13
17 17 C 1.34832 * 117.00600 * 5.77818 * 16 15 14
18 18 H 1.07997 * 119.99658 * 354.91945 * 17 16 15
19 19 C 1.38651 * 120.00157 * 174.91884 * 17 16 15
20 20 N 1.31556 * 120.00342 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00059 * 180.02562 * 19 17 16
22 22 H 1.48503 * 109.46884 * 270.00177 * 21 19 17
23 23 H 1.48494 * 109.47563 * 149.99751 * 21 19 17
24 24 H 1.48501 * 109.47122 * 29.99332 * 21 19 17
25 25 C 1.38085 * 119.96009 * 268.21997 * 11 9 3
26 26 N 1.47258 * 116.91873 * 359.97438 * 9 3 2
27 27 C 1.34770 * 118.41933 * 0.02562 * 26 9 3
28 28 O 1.21564 * 118.93013 * 179.97438 * 27 26 9
29 29 N 1.33899 * 122.13698 * 359.97438 * 27 26 9
30 30 H 1.09005 * 109.47312 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.47393 * 300.01559 * 1 2 3
32 32 H 1.09004 * 109.47454 * 60.01817 * 1 2 3
33 33 H 1.08996 * 109.47044 * 60.00200 * 7 6 4
34 34 H 1.08997 * 109.47156 * 180.02562 * 7 6 4
35 35 H 1.09000 * 109.47082 * 300.00328 * 7 6 4
36 36 H 1.09000 * 109.47754 * 94.84979 * 8 6 4
37 37 H 1.08995 * 109.47382 * 214.86074 * 8 6 4
38 38 H 1.09007 * 109.46817 * 334.85215 * 8 6 4
39 39 H 1.07999 * 119.92672 * 359.97438 * 12 11 9
40 40 H 1.07999 * 119.96510 * 180.02562 * 13 12 11
41 41 H 1.07997 * 120.03313 * 180.02562 * 14 13 12
42 42 H 0.97005 * 119.99632 * 0.02562 * 20 19 17
43 43 H 1.07995 * 120.03883 * 359.97438 * 25 11 9
44 44 H 0.97006 * 120.78955 * 180.02562 * 26 9 3
45 45 H 0.96994 * 118.16699 * 180.02562 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1704 1.1740 0.0000
4 6 1.4739 2.4079 0.0010
5 8 1.3129 3.0153 1.0438
6 7 0.9895 2.9093 -1.1525
7 6 0.3549 4.2296 -1.1681
8 6 1.0973 2.1338 -2.3907
9 6 3.6851 1.1297 0.0006
10 1 4.0371 1.6666 -0.8802
11 6 4.1710 1.8732 1.2180
12 6 4.3228 1.2060 2.4202
13 6 4.7690 1.8846 3.5393
14 6 5.0651 3.2314 3.4597
15 6 4.9138 3.9040 2.2543
16 8 5.2045 5.2274 2.1729
17 6 5.7485 5.8031 3.2641
18 1 5.8582 5.2352 4.1761
19 6 6.1670 7.1240 3.2152
20 7 6.0338 7.8156 2.1041
21 14 6.9212 7.9213 4.7268
22 1 5.8504 8.5504 5.5410
23 1 7.8964 8.9586 4.3049
24 1 7.6164 6.8885 5.5364
25 6 4.4585 3.2211 1.1337
26 7 4.3130 -0.2023 0.0017
27 6 3.5145 -1.2879 0.0016
28 8 4.0230 -2.3920 0.0021
29 7 2.1791 -1.1898 0.0010
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3634 0.5141 0.8898
32 1 -0.3634 0.5136 -0.8902
33 1 1.0709 4.9808 -0.8347
34 1 0.0277 4.4635 -2.1812
35 1 -0.5063 4.2268 -0.5000
36 1 0.1770 1.5716 -2.5488
37 1 1.2588 2.8101 -3.2301
38 1 1.9368 1.4425 -2.3145
39 1 4.0923 0.1529 2.4848
40 1 4.8868 1.3608 4.4764
41 1 5.4139 3.7607 4.3340
42 1 5.6425 7.4015 1.3190
43 1 4.3357 3.7425 0.1959
44 1 5.2786 -0.2960 0.0025
45 1 1.6598 -2.0090 0.0014
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000731427617.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:47
Heat of formation + Delta-G solvation = -59.393475 kcal
Electronic energy + Delta-G solvation = -31188.041486 eV
Core-core repulsion = 26978.097595 eV
Total energy + Delta-G solvation = -4209.943890 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.67788 -40.93827 -40.77204 -38.76494 -37.99421 -36.48773 -36.12885 -34.30598
-33.44741 -32.09823 -30.63471 -29.94812 -28.77319 -27.39403 -26.87541 -25.78106
-24.14942 -23.43684 -22.62629 -22.14439 -20.08897 -19.52638 -19.25469 -18.78150
-18.09924 -17.39058 -17.23321 -16.95146 -16.85350 -16.63991 -16.51689 -16.24533
-15.67637 -15.63151 -15.35840 -15.17887 -14.71163 -14.48848 -14.34901 -14.21500
-14.11563 -13.68909 -13.45857 -13.41699 -13.18938 -13.11047 -12.80187 -12.76414
-12.57929 -12.42033 -12.31696 -12.14741 -11.93836 -11.68040 -11.37353 -11.15546
-10.79870 -10.63429 -9.79890 -9.64002 -9.18426 -9.09481 -8.95777 -6.25863
0.20793 0.50348 0.62697 1.35291 1.46561 1.50246 1.60287 1.75984
1.88794 2.24359 2.32954 2.45911 2.77961 3.08608 3.23796 3.37135
3.63832 3.75153 3.91476 4.08748 4.19222 4.22043 4.28595 4.38329
4.42035 4.43951 4.47036 4.55834 4.57114 4.67703 4.79520 4.88986
4.91069 4.95563 4.98193 5.08636 5.15148 5.19069 5.49717 5.54926
5.60818 5.65374 5.71398 5.81896 5.98703 6.25548 6.30325 6.35332
6.85168 7.15000 7.17870 7.60373 8.48740
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.013167 B = 0.003536 C = 0.003007
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2125.951542 B = 7915.745587 C = 9308.277179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.206 3.794
3 C -0.281 4.281
4 C 0.586 3.414
5 O -0.568 6.568
6 N -0.614 5.614
7 C 0.087 3.913
8 C 0.071 3.929
9 C 0.254 3.746
10 H 0.091 0.909
11 C -0.051 4.051
12 C -0.168 4.168
13 C -0.073 4.073
14 C -0.238 4.238
15 C 0.122 3.878
16 O -0.250 6.250
17 C -0.488 4.488
18 H 0.088 0.912
19 C -0.043 4.043
20 N -0.915 5.915
21 Si 1.147 2.853
22 H -0.265 1.265
23 H -0.270 1.270
24 H -0.260 1.260
25 C -0.172 4.172
26 N -0.701 5.701
27 C 0.709 3.291
28 O -0.605 6.605
29 N -0.636 5.636
30 H 0.114 0.886
31 H 0.079 0.921
32 H 0.107 0.893
33 H 0.031 0.969
34 H 0.114 0.886
35 H 0.057 0.943
36 H 0.085 0.915
37 H 0.088 0.912
38 H 0.072 0.928
39 H 0.126 0.874
40 H 0.142 0.858
41 H 0.117 0.883
42 H 0.259 0.741
43 H 0.104 0.896
44 H 0.436 0.564
45 H 0.438 0.562
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.946 -17.886 -10.325 24.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.103 3.897
3 C -0.292 4.292
4 C 0.373 3.627
5 O -0.447 6.447
6 N -0.348 5.348
7 C -0.055 4.055
8 C -0.071 4.071
9 C 0.147 3.853
10 H 0.108 0.892
11 C -0.053 4.053
12 C -0.187 4.187
13 C -0.091 4.091
14 C -0.257 4.257
15 C 0.072 3.928
16 O -0.158 6.158
17 C -0.564 4.564
18 H 0.106 0.894
19 C -0.239 4.239
20 N -0.550 5.550
21 Si 0.963 3.037
22 H -0.190 1.190
23 H -0.195 1.195
24 H -0.184 1.184
25 C -0.192 4.192
26 N -0.359 5.359
27 C 0.410 3.590
28 O -0.484 6.484
29 N -0.280 5.280
30 H 0.132 0.868
31 H 0.098 0.902
32 H 0.125 0.875
33 H 0.050 0.950
34 H 0.132 0.868
35 H 0.076 0.924
36 H 0.103 0.897
37 H 0.107 0.893
38 H 0.091 0.909
39 H 0.143 0.857
40 H 0.160 0.840
41 H 0.135 0.865
42 H 0.068 0.932
43 H 0.122 0.878
44 H 0.278 0.722
45 H 0.280 0.720
Dipole moment (debyes) X Y Z Total
from point charges -13.128 -16.498 -9.441 23.101
hybrid contribution -0.206 -1.082 -0.373 1.163
sum -13.334 -17.580 -9.814 24.149
Atomic orbital electron populations
1.21270 0.85625 1.06668 1.04965 1.19983 0.95441 0.83731 0.90554
1.19283 0.93175 0.93472 1.23221 1.16326 0.78378 0.84544 0.83414
1.90917 1.58626 1.61849 1.33284 1.47916 1.58613 1.19341 1.08910
1.21686 0.97045 0.82603 1.04177 1.22120 1.03434 0.96820 0.84681
1.18243 0.89562 0.82353 0.95093 0.89159 1.19865 0.97131 0.91982
0.96312 1.20598 1.06117 0.99717 0.92268 1.21071 0.96185 0.92530
0.99275 1.21278 1.10272 0.96607 0.97583 1.19660 0.94389 0.83802
0.94958 1.83635 1.72613 1.19202 1.40364 1.22601 1.43723 0.99203
0.90887 0.89436 1.28379 0.96436 0.92480 1.06591 1.70681 1.42174
1.39333 1.02797 0.82557 0.76478 0.75703 0.69010 1.19014 1.19454
1.18440 1.19912 1.08560 0.94399 0.96284 1.45253 1.10019 1.03139
1.77535 1.15737 0.81939 0.84266 0.77106 1.91029 1.73213 1.25629
1.58525 1.42007 1.04933 1.09350 1.71749 0.86768 0.90241 0.87510
0.95048 0.86771 0.92433 0.89710 0.89311 0.90879 0.85657 0.84015
0.86536 0.93232 0.87806 0.72203 0.72019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.23 9.13 71.24 0.65 -0.58 16
2 C 0.21 3.39 6.53 41.03 0.27 3.66 16
3 C -0.28 -6.68 3.11 -19.53 -0.06 -6.74 16
4 C 0.59 16.67 5.26 85.10 0.45 17.12 16
5 O -0.57 -22.95 16.48 -4.51 -0.07 -23.03 16
6 N -0.61 -12.70 3.27 -882.58 -2.89 -15.59 16
7 C 0.09 1.78 10.17 127.77 1.30 3.08 16
8 C 0.07 0.77 9.52 127.77 1.22 1.98 16
9 C 0.25 6.68 3.36 43.62 0.15 6.82 16
10 H 0.09 2.25 7.97 -2.39 -0.02 2.23 16
11 C -0.05 -1.84 4.28 -19.88 -0.09 -1.92 16
12 C -0.17 -5.94 9.28 22.30 0.21 -5.73 16
13 C -0.07 -2.80 10.04 22.25 0.22 -2.58 16
14 C -0.24 -11.36 9.17 22.39 0.21 -11.16 16
15 C 0.12 6.46 6.65 22.58 0.15 6.61 16
16 O -0.25 -15.63 9.16 -22.69 -0.21 -15.84 16
17 C -0.49 -29.87 9.49 67.92 0.64 -29.22 16
18 H 0.09 5.05 5.21 -2.91 -0.02 5.03 16
19 C -0.04 -2.54 5.49 84.83 0.47 -2.07 16
20 N -0.92 -58.59 13.70 21.61 0.30 -58.29 16
21 Si 1.15 49.88 29.92 68.60 2.05 51.93 16
22 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16
23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
24 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16
25 C -0.17 -7.73 9.02 22.39 0.20 -7.53 16
26 N -0.70 -16.03 4.47 -462.94 -2.07 -18.10 16
27 C 0.71 16.03 8.63 179.33 1.55 17.57 16
28 O -0.60 -17.32 17.94 -3.92 -0.07 -17.39 16
29 N -0.64 -9.99 5.14 -313.45 -1.61 -11.60 16
30 H 0.11 0.32 7.85 -2.38 -0.02 0.30 16
31 H 0.08 1.11 8.11 -2.39 -0.02 1.09 16
32 H 0.11 0.73 6.30 -2.38 -0.02 0.72 16
33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16
34 H 0.11 1.34 7.86 -2.39 -0.02 1.32 16
35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.08 0.45 7.06 -2.39 -0.02 0.43 16
37 H 0.09 0.69 8.02 -2.39 -0.02 0.68 16
38 H 0.07 0.85 6.58 -2.38 -0.02 0.83 16
39 H 0.13 3.85 7.63 -2.91 -0.02 3.82 16
40 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16
41 H 0.12 5.69 5.64 -2.91 -0.02 5.68 16
42 H 0.26 17.34 7.97 -92.70 -0.74 16.60 16
43 H 0.10 4.66 8.04 -2.91 -0.02 4.64 16
44 H 0.44 9.41 8.93 -92.70 -0.83 8.59 16
45 H 0.44 4.32 8.44 -92.71 -0.78 3.54 16
Total: -1.00 -89.28 376.48 2.44 -86.83
By element:
Atomic # 1 Polarization: 32.25 SS G_CDS: -0.51 Total: 31.74 kcal
Atomic # 6 Polarization: -18.21 SS G_CDS: 7.53 Total: -10.69 kcal
Atomic # 7 Polarization: -97.30 SS G_CDS: -6.27 Total: -103.57 kcal
Atomic # 8 Polarization: -55.90 SS G_CDS: -0.35 Total: -56.25 kcal
Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.93 kcal
Total: -89.28 2.44 -86.83 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731427617.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.439 kcal
(2) G-P(sol) polarization free energy of solvation -89.277 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds