Wall clock time and date at job start Wed Apr 1 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 116.99744 * 2 1 4 4 C 1.38759 * 120.05864 * 0.02562 * 3 2 1 5 5 C 1.38114 * 119.94590 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.05586 * 359.74233 * 5 4 3 7 7 C 1.38247 * 120.11163 * 0.51416 * 6 5 4 8 8 C 1.50696 * 119.97216 * 179.76151 * 7 6 5 9 9 H 1.09001 * 109.47220 * 204.72540 * 8 7 6 10 10 O 1.42908 * 109.47359 * 324.72642 * 8 7 6 11 11 C 1.50704 * 109.47283 * 84.72318 * 8 7 6 12 12 O 1.21291 * 120.00259 * 245.00072 * 11 8 7 13 13 N 1.34779 * 119.99258 * 64.99729 * 11 8 7 14 14 C 1.40162 * 119.99437 * 180.02562 * 13 11 8 15 15 C 1.40415 * 125.97631 * 0.31570 * 14 13 11 16 16 C 1.35232 * 107.86655 * 180.13084 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84998 * 16 15 14 18 18 N 1.34968 * 107.86163 * 359.58679 * 16 15 14 19 19 C 1.46509 * 125.97450 * 180.23081 * 18 16 15 20 20 C 1.50698 * 109.47025 * 89.99735 * 19 18 16 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47105 * 90.00179 * 24 22 20 26 26 H 1.48499 * 109.46684 * 210.00001 * 24 22 20 27 27 H 1.48503 * 109.47226 * 329.99788 * 24 22 20 28 28 N 1.31221 * 125.97269 * 179.97438 * 14 13 11 29 29 C 1.38161 * 120.05341 * 359.48737 * 7 6 5 30 30 H 1.09001 * 109.46918 * 299.99618 * 1 2 3 31 31 H 1.09001 * 109.46839 * 59.99864 * 1 2 3 32 32 H 1.09000 * 109.46438 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.02327 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.96998 * 180.02562 * 5 4 3 35 35 H 1.08010 * 119.94714 * 180.27735 * 6 5 4 36 36 H 0.96697 * 113.99868 * 59.99518 * 10 8 7 37 37 H 0.96991 * 120.00480 * 0.02562 * 13 11 8 38 38 H 1.07995 * 126.06342 * 0.02562 * 15 14 13 39 39 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 40 40 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 41 41 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 42 42 H 1.08994 * 109.46750 * 210.00045 * 19 18 16 43 43 H 1.09004 * 109.46474 * 329.99737 * 19 18 16 44 44 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02772 * 180.27359 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0065 7 6 4.0559 2.5172 0.0006 8 6 5.5607 2.5983 0.0010 9 1 5.9738 1.6880 -0.4334 10 8 5.9772 3.7263 -0.7713 11 6 6.0553 2.7487 1.4167 12 8 6.6219 3.7659 1.7563 13 7 5.8678 1.7527 2.3052 14 6 6.3273 1.8927 3.6219 15 6 6.9897 3.0126 4.1497 16 6 7.2687 2.7560 5.4478 17 6 7.9773 3.6818 6.4029 18 7 6.7946 1.5261 5.7379 19 6 6.8792 0.8555 7.0377 20 6 5.6615 1.1947 7.8581 21 1 4.9003 1.8443 7.4519 22 6 5.5186 0.6746 9.1271 23 7 6.4451 -0.1168 9.6216 24 14 4.0087 1.0944 10.1438 25 1 2.9425 0.0943 9.8828 26 1 4.3624 1.0760 11.5859 27 1 3.5211 2.4466 9.7709 28 7 6.2081 1.0026 4.5786 29 6 3.4311 1.2849 0.0000 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2128 2.3204 0.0014 34 1 1.3338 4.5114 0.0019 35 1 3.7921 4.6382 0.0114 36 1 5.6457 4.5727 -0.4416 37 1 5.4150 0.9392 2.0335 38 1 7.2346 3.9175 3.6136 39 1 9.0502 3.4935 6.3626 40 1 7.6152 3.5055 7.4157 41 1 7.7791 4.7159 6.1209 42 1 6.9275 -0.2229 6.8877 43 1 7.7748 1.1900 7.5614 44 1 6.3447 -0.4823 10.5145 45 1 4.0207 0.3800 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768051659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:04 Heat of formation + Delta-G solvation = -15.475014 kcal Electronic energy + Delta-G solvation = -29517.613033 eV Core-core repulsion = 25309.573590 eV Total energy + Delta-G solvation = -4208.039443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05385 -40.48003 -39.63492 -37.93157 -36.40307 -34.87873 -33.44490 -32.18428 -31.35743 -30.86249 -30.53339 -28.02545 -27.30478 -26.44001 -26.24098 -23.25917 -22.96505 -22.19709 -21.19890 -19.84975 -19.46266 -18.62683 -17.56358 -16.85206 -16.70859 -16.41961 -16.26543 -16.05477 -16.01405 -15.53624 -15.20512 -14.66865 -14.42406 -14.17017 -14.02149 -13.91846 -13.54248 -13.12836 -13.08185 -12.73083 -12.49623 -12.35440 -12.30952 -12.10649 -12.06971 -11.73801 -11.48351 -11.43157 -11.40404 -11.12052 -10.95434 -10.84639 -10.48159 -10.25893 -9.96211 -9.71371 -9.55351 -9.10888 -8.66007 -8.53643 -7.96495 -7.48990 -6.27078 -4.34819 0.84788 1.10835 2.17728 2.65019 2.86202 2.93622 3.20292 3.26518 3.30906 3.35034 3.66756 3.80301 4.06677 4.22647 4.28892 4.41780 4.56382 4.66682 4.72611 4.81511 4.84620 4.90018 5.06562 5.11384 5.16937 5.28858 5.41469 5.60358 5.69040 5.90310 5.91986 6.04084 6.08588 6.12883 6.19993 6.32495 6.44952 6.50477 6.67633 6.91163 7.03541 7.04140 7.14829 7.40058 7.58847 7.65622 7.87240 8.02985 8.12328 8.62473 8.73413 9.31614 10.80215 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009813 B = 0.002961 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.709174 B = 9454.239650 C =11390.666695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.133 3.867 4 C -0.202 4.202 5 C -0.073 4.073 6 C -0.140 4.140 7 C -0.082 4.082 8 C 0.144 3.856 9 H 0.139 0.861 10 O -0.525 6.525 11 C 0.496 3.504 12 O -0.506 6.506 13 N -0.623 5.623 14 C 0.261 3.739 15 C -0.289 4.289 16 C 0.092 3.908 17 C -0.089 4.089 18 N -0.316 5.316 19 C 0.258 3.742 20 C -0.537 4.537 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 N -0.318 5.318 29 C -0.140 4.140 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.385 0.615 37 H 0.411 0.589 38 H 0.159 0.841 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.268 0.732 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 5.203 -20.637 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.088 3.912 4 C -0.221 4.221 5 C -0.091 4.091 6 C -0.159 4.159 7 C -0.083 4.083 8 C 0.080 3.920 9 H 0.156 0.844 10 O -0.331 6.331 11 C 0.280 3.720 12 O -0.379 6.379 13 N -0.271 5.271 14 C 0.009 3.991 15 C -0.320 4.320 16 C -0.040 4.040 17 C -0.147 4.147 18 N -0.098 5.098 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 N -0.148 5.148 29 C -0.158 4.158 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.235 0.765 37 H 0.246 0.754 38 H 0.176 0.824 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.781 3.978 -20.181 21.992 hybrid contribution -1.473 0.856 0.716 1.848 sum -9.253 4.834 -19.465 22.088 Atomic orbital electron populations 1.23093 0.78121 1.04209 1.01397 1.86094 1.21588 1.26599 1.88482 1.18919 0.92123 0.84385 0.95791 1.21317 1.00277 0.92411 1.08108 1.20900 0.94252 0.97247 0.96747 1.20795 0.94044 0.97850 1.03170 1.19960 0.94731 0.93496 1.00148 1.20585 0.89841 0.92927 0.88624 0.84398 1.86640 1.76677 1.16874 1.52878 1.21288 0.79854 0.83404 0.87435 1.90673 1.40571 1.28427 1.78227 1.42439 1.57349 1.20112 1.07209 1.18988 1.00036 0.95009 0.85094 1.21223 1.14571 1.02117 0.94125 1.21069 0.99141 0.88404 0.95352 1.20381 0.99087 0.96868 0.98364 1.49013 1.40058 1.11712 1.09014 1.19701 0.98714 0.94150 0.73366 1.21321 1.05629 1.31077 0.99494 0.91765 1.24923 0.96980 0.94507 0.97326 1.69914 1.33712 1.31724 1.17549 0.86362 0.82338 0.79066 0.78965 1.20338 1.20839 1.19666 1.77265 1.23494 1.21908 0.92157 1.20176 0.91809 0.97751 1.06101 0.92428 0.92634 0.88030 0.85224 0.85308 0.85602 0.76527 0.75404 0.82408 0.91035 0.89881 0.90623 0.92974 0.92750 0.92231 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.19 10.50 -19.43 -0.20 -3.40 16 3 C 0.13 1.39 6.69 -39.22 -0.26 1.12 16 4 C -0.20 -1.84 9.04 -39.43 -0.36 -2.20 16 5 C -0.07 -0.65 10.04 -39.61 -0.40 -1.05 16 6 C -0.14 -1.34 9.32 -39.56 -0.37 -1.71 16 7 C -0.08 -0.83 4.95 -104.65 -0.52 -1.35 16 8 C 0.14 1.49 3.62 -29.03 -0.11 1.39 16 9 H 0.14 1.13 8.05 -51.93 -0.42 0.71 16 10 O -0.53 -5.59 12.79 -55.09 -0.70 -6.29 16 11 C 0.50 7.08 7.12 -10.98 -0.08 7.00 16 12 O -0.51 -8.69 13.46 -14.31 -0.19 -8.88 16 13 N -0.62 -9.73 5.40 -11.13 -0.06 -9.79 16 14 C 0.26 5.34 8.11 -154.38 -1.25 4.09 16 15 C -0.29 -5.97 9.52 -39.83 -0.38 -6.35 16 16 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 17 C -0.09 -1.52 9.89 36.01 0.36 -1.16 16 18 N -0.32 -7.51 3.59 -58.32 -0.21 -7.72 16 19 C 0.26 6.63 5.81 -5.19 -0.03 6.60 16 20 C -0.54 -14.78 9.39 -34.44 -0.32 -15.10 16 21 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 24 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 N -0.32 -7.38 12.59 31.44 0.40 -6.98 16 29 C -0.14 -1.41 9.45 -39.44 -0.37 -1.78 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.13 0.99 6.62 -52.48 -0.35 0.64 16 36 H 0.38 3.27 7.14 45.56 0.33 3.59 16 37 H 0.41 5.35 8.65 -40.82 -0.35 5.00 16 38 H 0.16 3.15 5.92 -52.49 -0.31 2.84 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -34.35 385.78 -8.32 -42.67 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.11 Total: 9.05 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.76 Total: -6.26 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.86 Total: -48.73 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.10 Total: -18.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.35 -8.32 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768051659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.193 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds