Wall clock time and date at job start Wed Apr 1 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 116.99744 * 2 1 4 4 C 1.38759 * 120.05864 * 0.02562 * 3 2 1 5 5 C 1.38114 * 119.94590 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.05586 * 359.74233 * 5 4 3 7 7 C 1.38247 * 120.11163 * 0.51416 * 6 5 4 8 8 C 1.50696 * 119.97216 * 179.76151 * 7 6 5 9 9 H 1.09001 * 109.47220 * 204.72540 * 8 7 6 10 10 O 1.42908 * 109.47359 * 324.72642 * 8 7 6 11 11 C 1.50704 * 109.47283 * 84.72318 * 8 7 6 12 12 O 1.21291 * 120.00259 * 245.00072 * 11 8 7 13 13 N 1.34779 * 119.99258 * 64.99729 * 11 8 7 14 14 C 1.40162 * 119.99437 * 180.02562 * 13 11 8 15 15 C 1.40415 * 125.97631 * 0.31570 * 14 13 11 16 16 C 1.35232 * 107.86655 * 180.13084 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84998 * 16 15 14 18 18 N 1.34968 * 107.86163 * 359.58679 * 16 15 14 19 19 C 1.46509 * 125.97450 * 180.23081 * 18 16 15 20 20 C 1.50698 * 109.47025 * 89.99735 * 19 18 16 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47105 * 90.00179 * 24 22 20 26 26 H 1.48499 * 109.46684 * 210.00001 * 24 22 20 27 27 H 1.48503 * 109.47226 * 329.99788 * 24 22 20 28 28 N 1.31221 * 125.97269 * 179.97438 * 14 13 11 29 29 C 1.38161 * 120.05341 * 359.48737 * 7 6 5 30 30 H 1.09001 * 109.46918 * 299.99618 * 1 2 3 31 31 H 1.09001 * 109.46839 * 59.99864 * 1 2 3 32 32 H 1.09000 * 109.46438 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.02327 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.96998 * 180.02562 * 5 4 3 35 35 H 1.08010 * 119.94714 * 180.27735 * 6 5 4 36 36 H 0.96697 * 113.99868 * 59.99518 * 10 8 7 37 37 H 0.96991 * 120.00480 * 0.02562 * 13 11 8 38 38 H 1.07995 * 126.06342 * 0.02562 * 15 14 13 39 39 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 40 40 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 41 41 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 42 42 H 1.08994 * 109.46750 * 210.00045 * 19 18 16 43 43 H 1.09004 * 109.46474 * 329.99737 * 19 18 16 44 44 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02772 * 180.27359 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0065 7 6 4.0559 2.5172 0.0006 8 6 5.5607 2.5983 0.0010 9 1 5.9738 1.6880 -0.4334 10 8 5.9772 3.7263 -0.7713 11 6 6.0553 2.7487 1.4167 12 8 6.6219 3.7659 1.7563 13 7 5.8678 1.7527 2.3052 14 6 6.3273 1.8927 3.6219 15 6 6.9897 3.0126 4.1497 16 6 7.2687 2.7560 5.4478 17 6 7.9773 3.6818 6.4029 18 7 6.7946 1.5261 5.7379 19 6 6.8792 0.8555 7.0377 20 6 5.6615 1.1947 7.8581 21 1 4.9003 1.8443 7.4519 22 6 5.5186 0.6746 9.1271 23 7 6.4451 -0.1168 9.6216 24 14 4.0087 1.0944 10.1438 25 1 2.9425 0.0943 9.8828 26 1 4.3624 1.0760 11.5859 27 1 3.5211 2.4466 9.7709 28 7 6.2081 1.0026 4.5786 29 6 3.4311 1.2849 0.0000 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2128 2.3204 0.0014 34 1 1.3338 4.5114 0.0019 35 1 3.7921 4.6382 0.0114 36 1 5.6457 4.5727 -0.4416 37 1 5.4150 0.9392 2.0335 38 1 7.2346 3.9175 3.6136 39 1 9.0502 3.4935 6.3626 40 1 7.6152 3.5055 7.4157 41 1 7.7791 4.7159 6.1209 42 1 6.9275 -0.2229 6.8877 43 1 7.7748 1.1900 7.5614 44 1 6.3447 -0.4823 10.5145 45 1 4.0207 0.3800 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768051659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:03 Heat of formation + Delta-G solvation = -38.291335 kcal Electronic energy + Delta-G solvation = -29518.602423 eV Core-core repulsion = 25309.573590 eV Total energy + Delta-G solvation = -4209.028833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.41507 -41.52604 -40.67753 -38.77937 -37.26909 -36.30387 -35.35519 -33.35679 -32.71919 -32.45030 -31.25680 -29.09962 -28.32578 -27.90792 -27.60800 -25.03031 -23.70771 -23.34680 -22.21966 -21.32342 -20.89975 -19.35792 -18.86718 -18.68027 -17.89951 -17.41349 -17.18052 -17.07831 -16.87010 -16.66720 -16.55045 -16.26857 -15.79548 -15.41790 -15.22004 -14.77698 -14.59242 -14.35757 -14.26365 -13.85373 -13.82934 -13.63815 -13.61803 -13.37391 -13.16995 -12.98942 -12.84520 -12.73848 -12.70482 -12.32193 -12.22547 -12.12329 -12.02242 -11.74033 -11.53536 -11.38304 -10.88522 -10.74666 -9.91391 -9.61686 -9.24139 -9.17980 -8.34034 -6.51739 0.11797 0.40117 0.82883 1.25166 1.34461 1.37169 1.38451 1.49878 2.11130 2.21468 2.32741 2.37347 2.64899 2.95814 3.27160 3.38114 3.52580 3.78239 3.87534 4.00522 4.11013 4.12804 4.21696 4.29118 4.37854 4.44682 4.48481 4.61726 4.72350 4.73483 4.76008 4.85116 4.93762 4.96128 4.97083 5.10669 5.21084 5.23241 5.36052 5.42998 5.52301 5.66662 5.79616 5.89325 6.13138 6.23965 6.39313 6.45053 6.60445 6.87675 7.02566 7.19302 8.72144 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009813 B = 0.002961 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.709174 B = 9454.239650 C =11390.666695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.205 4.205 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.091 4.091 8 C 0.160 3.840 9 H 0.163 0.837 10 O -0.530 6.530 11 C 0.498 3.502 12 O -0.534 6.534 13 N -0.617 5.617 14 C 0.270 3.730 15 C -0.298 4.298 16 C 0.088 3.912 17 C -0.086 4.086 18 N -0.341 5.341 19 C 0.275 3.725 20 C -0.554 4.554 21 H 0.049 0.951 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.270 1.270 28 N -0.357 5.357 29 C -0.151 4.151 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.393 0.607 37 H 0.422 0.578 38 H 0.168 0.832 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.274 0.726 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 6.362 -21.520 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.069 3.931 4 C -0.224 4.224 5 C -0.097 4.097 6 C -0.170 4.170 7 C -0.092 4.092 8 C 0.097 3.903 9 H 0.180 0.820 10 O -0.337 6.337 11 C 0.285 3.715 12 O -0.408 6.408 13 N -0.267 5.267 14 C 0.016 3.984 15 C -0.328 4.328 16 C -0.043 4.043 17 C -0.144 4.144 18 N -0.124 5.124 19 C 0.157 3.843 20 C -0.592 4.592 21 H 0.067 0.933 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.194 1.194 27 H -0.194 1.194 28 N -0.187 5.187 29 C -0.170 4.170 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.245 0.755 37 H 0.260 0.740 38 H 0.185 0.815 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.012 5.142 -21.099 23.513 hybrid contribution -1.118 0.531 0.864 1.509 sum -10.130 5.673 -20.236 23.330 Atomic orbital electron populations 1.23342 0.76467 1.05554 1.02242 1.86062 1.23437 1.26780 1.88580 1.19164 0.92536 0.84973 0.96409 1.21621 1.01406 0.92149 1.07217 1.21231 0.94278 0.98122 0.96061 1.21104 0.94666 0.98352 1.02901 1.19914 0.94266 0.93831 1.01141 1.20572 0.90225 0.93833 0.85694 0.81984 1.86635 1.76902 1.17477 1.52691 1.22146 0.78632 0.82296 0.88462 1.90645 1.41733 1.29434 1.79012 1.42605 1.57327 1.21275 1.05539 1.19347 0.98465 0.94187 0.86389 1.21416 1.14860 1.02499 0.94067 1.21768 0.98336 0.87801 0.96379 1.20508 0.99893 0.97468 0.96497 1.48806 1.42030 1.12820 1.08725 1.19254 0.98082 0.92620 0.74383 1.21426 1.06028 1.31410 1.00339 0.93312 1.25722 0.99793 0.94062 0.98157 1.69994 1.35251 1.32154 1.18130 0.85369 0.78635 0.78754 0.77821 1.20008 1.19417 1.19423 1.77186 1.25355 1.23426 0.92739 1.20391 0.92230 0.98264 1.06119 0.92179 0.91115 0.86586 0.83294 0.83005 0.84273 0.75516 0.74008 0.81505 0.88836 0.91408 0.87890 0.95768 0.92958 0.91692 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.51 10.50 -92.44 -0.97 -7.48 16 3 C 0.11 2.26 6.69 22.51 0.15 2.41 16 4 C -0.21 -3.39 9.04 22.36 0.20 -3.19 16 5 C -0.08 -1.24 10.04 22.25 0.22 -1.01 16 6 C -0.15 -2.64 9.32 22.28 0.21 -2.43 16 7 C -0.09 -1.69 4.95 -19.88 -0.10 -1.79 16 8 C 0.16 3.04 3.62 29.10 0.11 3.14 16 9 H 0.16 2.28 8.05 -2.39 -0.02 2.27 16 10 O -0.53 -10.26 12.79 -129.99 -1.66 -11.92 16 11 C 0.50 13.62 7.12 87.66 0.62 14.24 16 12 O -0.53 -17.75 13.46 15.92 0.21 -17.54 16 13 N -0.62 -18.92 5.40 -307.50 -1.66 -20.58 16 14 C 0.27 11.08 8.11 133.32 1.08 12.16 16 15 C -0.30 -12.20 9.52 22.11 0.21 -11.99 16 16 C 0.09 3.72 6.92 41.38 0.29 4.00 16 17 C -0.09 -2.86 9.89 71.24 0.70 -2.16 16 18 N -0.34 -16.67 3.59 -338.43 -1.22 -17.89 16 19 C 0.28 14.66 5.81 85.63 0.50 15.16 16 20 C -0.55 -31.19 9.39 25.60 0.24 -30.94 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 22 C 0.02 1.30 5.46 84.66 0.46 1.77 16 23 N -0.92 -51.81 13.29 21.45 0.28 -51.53 16 24 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 N -0.36 -16.95 12.59 -54.44 -0.69 -17.64 16 29 C -0.15 -2.89 9.45 22.36 0.21 -2.68 16 30 H 0.06 0.64 7.66 -2.39 -0.02 0.63 16 31 H 0.07 0.57 7.66 -2.39 -0.02 0.56 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.15 1.74 6.30 -2.91 -0.02 1.72 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.14 1.92 6.62 -2.91 -0.02 1.90 16 36 H 0.39 5.98 7.14 -74.06 -0.53 5.45 16 37 H 0.42 10.77 8.65 -92.71 -0.80 9.97 16 38 H 0.17 6.52 5.92 -2.91 -0.02 6.50 16 39 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.07 2.48 7.71 -2.39 -0.02 2.46 16 41 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 42 H 0.02 1.39 8.14 -2.39 -0.02 1.38 16 43 H 0.05 2.75 7.65 -2.39 -0.02 2.73 16 44 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -74.45 385.78 2.27 -72.17 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.28 Total: 29.34 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 6.22 Total: -1.99 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -3.28 Total: -107.63 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -2.42 Total: -36.94 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -74.45 2.27 -72.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768051659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.883 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds