Wall clock time and date at job start Wed Apr 1 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38073 * 119.99862 * 2 1 4 4 C 1.38853 * 119.99431 * 180.27477 * 3 2 1 5 5 N 1.40067 * 120.00597 * 179.74069 * 4 3 2 6 6 C 1.34776 * 120.00173 * 214.82356 * 5 4 3 7 7 O 1.21584 * 119.99704 * 355.37894 * 6 5 4 8 8 N 1.34769 * 119.99540 * 175.38271 * 6 5 4 9 9 C 1.46511 * 119.99525 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47051 * 325.00543 * 9 8 6 11 11 C 1.53001 * 109.46450 * 85.00192 * 9 8 6 12 12 C 1.50697 * 109.47127 * 205.00016 * 9 8 6 13 13 H 1.08002 * 119.99762 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99703 * 180.28186 * 12 9 8 15 15 N 1.31510 * 120.00499 * 359.71685 * 14 12 9 16 16 Si 1.86803 * 119.99882 * 179.72457 * 14 12 9 17 17 H 1.48510 * 109.47200 * 59.99605 * 16 14 12 18 18 H 1.48500 * 109.47270 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47222 * 299.99561 * 16 14 12 20 20 C 1.38895 * 119.98936 * 359.46533 * 4 3 2 21 21 C 1.38022 * 119.99583 * 0.28046 * 20 4 3 22 22 C 1.38814 * 119.99804 * 179.76393 * 2 1 3 23 23 N 1.40318 * 119.99361 * 359.97438 * 22 2 1 24 24 C 1.33879 * 122.76655 * 89.73466 * 23 22 2 25 25 O 1.21233 * 125.38987 * 359.97438 * 24 23 22 26 26 C 1.51315 * 109.21188 * 179.84121 * 24 23 22 27 27 C 1.54231 * 103.55314 * 0.38546 * 26 24 23 28 28 C 1.33884 * 122.76610 * 270.02141 * 23 22 2 29 29 O 1.21231 * 125.39256 * 0.02562 * 28 23 22 30 30 H 1.08998 * 109.47546 * 270.23452 * 1 2 3 31 31 H 1.09001 * 109.47404 * 30.23699 * 1 2 3 32 32 H 1.09000 * 109.47353 * 150.23762 * 1 2 3 33 33 H 1.07997 * 120.00327 * 0.03699 * 3 2 1 34 34 H 0.96999 * 119.99663 * 34.82005 * 5 4 3 35 35 H 0.96997 * 120.00609 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.47804 * 60.00029 * 11 9 8 37 37 H 1.09008 * 109.46500 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47355 * 299.99516 * 11 9 8 39 39 H 0.96998 * 120.00579 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.99729 * 180.29800 * 20 4 3 41 41 H 1.07997 * 119.99685 * 179.97438 * 21 20 4 42 42 H 1.08998 * 110.79257 * 241.77458 * 26 24 23 43 43 H 1.09000 * 110.54687 * 118.87305 * 26 24 23 44 44 H 1.09002 * 110.59855 * 241.26135 * 27 26 24 45 45 H 1.08989 * 110.73658 * 118.36039 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1958 0.0000 4 6 3.5857 1.1957 -0.0058 5 7 4.2863 2.4086 -0.0113 6 6 5.4503 2.5115 -0.6828 7 8 5.9347 1.5306 -1.2134 8 7 6.0771 3.7016 -0.7661 9 6 7.3427 3.8134 -1.4957 10 1 7.9202 2.8985 -1.3636 11 6 7.0564 4.0254 -2.9836 12 6 8.1277 4.9844 -0.9633 13 1 7.7241 5.5855 -0.1619 14 6 9.3583 5.2921 -1.5035 15 7 9.8496 4.5605 -2.4796 16 14 10.3280 6.7483 -0.8487 17 1 10.6104 6.5461 0.5952 18 1 11.6086 6.8646 -1.5915 19 1 9.5362 7.9916 -1.0289 20 6 4.2799 -0.0073 -0.0003 21 6 3.5895 -1.2024 0.0050 22 6 2.2009 -1.2022 0.0050 23 7 1.4992 -2.4173 0.0105 24 6 1.1318 -3.0470 -1.1124 25 8 1.3521 -2.6584 -2.2394 26 6 0.4011 -4.3220 -0.7519 27 6 0.4012 -4.3150 0.7904 28 6 1.1368 -3.0396 1.1392 29 8 1.3621 -2.6437 2.2627 30 1 -0.3634 0.0042 1.0276 31 1 -0.3634 0.8878 -0.5175 32 1 -0.3634 -0.8921 -0.5101 33 1 1.6573 2.1311 0.0006 34 1 3.9336 3.1744 0.4683 35 1 5.6904 4.4842 -0.3431 36 1 6.4788 4.9403 -3.1158 37 1 7.9981 4.1081 -3.5265 38 1 6.4887 3.1785 -3.3687 39 1 10.7152 4.7772 -2.8599 40 1 5.3599 -0.0075 0.0001 41 1 4.1292 -2.1378 0.0088 42 1 0.9339 -5.1939 -1.1317 43 1 -0.6189 -4.3000 -1.1356 44 1 0.9340 -5.1835 1.1778 45 1 -0.6178 -4.2879 1.1762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775620700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:03 Heat of formation + Delta-G solvation = -57.346533 kcal Electronic energy + Delta-G solvation = -29593.161871 eV Core-core repulsion = 25383.306743 eV Total energy + Delta-G solvation = -4209.855128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46214 -40.22000 -38.82380 -38.57645 -36.18982 -35.36500 -34.45622 -33.09393 -32.75436 -32.18692 -29.48665 -28.16575 -26.93963 -26.57014 -25.27169 -23.31403 -22.66328 -22.46527 -21.16100 -19.99688 -19.71267 -18.36723 -18.01516 -17.38336 -17.18359 -16.62575 -15.96989 -15.56323 -15.47658 -15.03277 -14.62406 -14.54117 -14.27801 -14.27397 -14.17593 -13.95065 -13.81284 -13.44464 -13.38865 -13.06892 -12.83955 -12.41036 -12.33865 -12.19586 -11.84234 -11.73695 -11.50949 -11.12381 -11.00699 -10.96584 -10.79006 -10.51363 -10.35451 -10.24860 -10.15957 -9.96439 -9.43659 -9.08079 -8.79631 -8.58801 -8.17389 -7.80342 -6.14372 -4.24002 1.11163 1.19333 1.34112 2.21658 2.35934 3.08138 3.24412 3.29993 3.31674 3.43083 3.76253 3.80228 3.92849 3.99810 4.30298 4.36167 4.65724 4.71585 4.84837 4.95981 5.02678 5.09015 5.10515 5.13959 5.18102 5.33936 5.36153 5.46706 5.63707 5.69215 5.93205 6.20381 6.36198 6.42009 6.46907 6.55549 6.77815 6.96159 7.01546 7.06399 7.09171 7.19540 7.41788 7.55281 7.59407 7.79796 7.95888 8.12949 8.68467 8.80413 9.17592 9.43974 10.91565 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002068 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.689965 B =13534.943981 C =13726.362280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.047 4.047 3 C -0.150 4.150 4 C 0.203 3.797 5 N -0.696 5.696 6 C 0.692 3.308 7 O -0.579 6.579 8 N -0.717 5.717 9 C 0.280 3.720 10 H 0.050 0.950 11 C -0.149 4.149 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.117 4.117 21 C -0.073 4.073 22 C 0.071 3.929 23 N -0.523 5.523 24 C 0.521 3.479 25 O -0.467 6.467 26 C -0.155 4.155 27 C -0.155 4.155 28 C 0.524 3.476 29 O -0.471 6.471 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.132 0.868 34 H 0.404 0.596 35 H 0.387 0.613 36 H 0.026 0.974 37 H 0.091 0.909 38 H 0.015 0.985 39 H 0.266 0.734 40 H 0.153 0.847 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.828 -15.338 6.837 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.048 4.048 3 C -0.171 4.171 4 C 0.106 3.894 5 N -0.344 5.344 6 C 0.393 3.607 7 O -0.457 6.457 8 N -0.368 5.368 9 C 0.179 3.821 10 H 0.068 0.932 11 C -0.207 4.207 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.731 3.269 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.138 4.138 21 C -0.093 4.093 22 C -0.018 4.018 23 N -0.263 5.263 24 C 0.310 3.690 25 O -0.336 6.336 26 C -0.195 4.195 27 C -0.195 4.195 28 C 0.313 3.687 29 O -0.341 6.341 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.240 0.760 35 H 0.219 0.781 36 H 0.045 0.955 37 H 0.110 0.890 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.826 -15.713 6.151 27.588 hybrid contribution 0.272 1.621 0.658 1.771 sum -21.555 -14.092 6.809 26.637 Atomic orbital electron populations 1.20721 0.90870 1.02797 1.02361 1.19528 0.95911 0.91325 0.98076 1.20586 0.92064 0.97700 1.06768 1.17619 0.90167 0.85765 0.95855 1.42924 1.23988 1.12510 1.54932 1.16161 0.79816 0.85295 0.79451 1.90880 1.66186 1.36564 1.52028 1.45886 1.26412 1.07365 1.57117 1.18703 0.77573 0.98097 0.87749 0.93214 1.22110 1.02062 0.97101 0.99466 1.21156 1.03195 1.13427 1.19590 0.92105 1.24882 0.97214 0.96833 0.94766 1.69888 1.18701 1.38672 1.24709 0.86482 0.79140 0.82318 0.78980 1.20171 1.21105 1.20168 1.21311 1.02079 0.89853 1.00543 1.20973 0.91858 0.98741 0.97747 1.17274 0.90633 0.83400 1.10475 1.44245 1.51150 1.21364 1.09581 1.20978 0.78176 0.85970 0.83887 1.90828 1.52473 1.69391 1.20917 1.22470 1.03979 0.97132 0.95889 1.22468 1.03906 0.97099 0.95990 1.20952 0.78064 0.85951 0.83746 1.90797 1.52793 1.69232 1.21319 0.90802 0.90762 0.92351 0.85010 0.76038 0.78091 0.95497 0.89030 0.96543 0.92443 0.82940 0.85617 0.85942 0.86062 0.86001 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.76 36.00 0.35 -0.71 16 2 C -0.05 -0.60 5.89 -104.47 -0.62 -1.21 16 3 C -0.15 -1.93 9.61 -39.41 -0.38 -2.31 16 4 C 0.20 3.13 6.30 -83.62 -0.53 2.61 16 5 N -0.70 -10.69 5.35 -14.19 -0.08 -10.76 16 6 C 0.69 13.97 8.37 -86.93 -0.73 13.24 16 7 O -0.58 -13.91 13.44 5.29 0.07 -13.84 16 8 N -0.72 -14.75 5.07 -59.81 -0.30 -15.06 16 9 C 0.28 7.11 2.56 -69.08 -0.18 6.93 16 10 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 11 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 12 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -24.78 11.31 55.43 0.63 -24.15 16 16 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.12 -1.94 8.69 -39.42 -0.34 -2.28 16 21 C -0.07 -1.09 9.96 -39.43 -0.39 -1.48 16 22 C 0.07 0.97 4.77 -83.53 -0.40 0.57 16 23 N -0.52 -5.66 1.72 -59.37 -0.10 -5.76 16 24 C 0.52 5.12 7.40 -11.08 -0.08 5.04 16 25 O -0.47 -6.60 17.65 5.60 0.10 -6.50 16 26 C -0.15 -0.60 7.03 -26.94 -0.19 -0.79 16 27 C -0.15 -0.56 7.03 -26.94 -0.19 -0.75 16 28 C 0.52 4.88 8.04 -11.08 -0.09 4.79 16 29 O -0.47 -6.14 17.65 5.60 0.10 -6.05 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.06 0.54 6.91 -51.93 -0.36 0.18 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.40 4.69 8.84 -40.82 -0.36 4.33 16 35 H 0.39 6.73 8.56 -40.82 -0.35 6.38 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.49 6.06 -51.92 -0.31 2.17 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.15 2.84 6.22 -52.49 -0.33 2.51 16 41 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -35.94 383.16 -8.51 -44.45 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.87 Total: 8.77 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -3.81 Total: 7.62 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.15 Total: -55.73 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.27 Total: -26.38 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.94 -8.51 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775620700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.894 kcal (2) G-P(sol) polarization free energy of solvation -35.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds