Wall clock time and date at job start Wed Apr 1 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38073 * 119.99862 * 2 1 4 4 C 1.38853 * 119.99431 * 180.27477 * 3 2 1 5 5 N 1.40067 * 120.00597 * 179.74069 * 4 3 2 6 6 C 1.34776 * 120.00173 * 214.82356 * 5 4 3 7 7 O 1.21584 * 119.99704 * 355.37894 * 6 5 4 8 8 N 1.34769 * 119.99540 * 175.38271 * 6 5 4 9 9 C 1.46511 * 119.99525 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47051 * 325.00543 * 9 8 6 11 11 C 1.53001 * 109.46450 * 85.00192 * 9 8 6 12 12 C 1.50697 * 109.47127 * 205.00016 * 9 8 6 13 13 H 1.08002 * 119.99762 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99703 * 180.28186 * 12 9 8 15 15 N 1.31510 * 120.00499 * 359.71685 * 14 12 9 16 16 Si 1.86803 * 119.99882 * 179.72457 * 14 12 9 17 17 H 1.48510 * 109.47200 * 59.99605 * 16 14 12 18 18 H 1.48500 * 109.47270 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47222 * 299.99561 * 16 14 12 20 20 C 1.38895 * 119.98936 * 359.46533 * 4 3 2 21 21 C 1.38022 * 119.99583 * 0.28046 * 20 4 3 22 22 C 1.38814 * 119.99804 * 179.76393 * 2 1 3 23 23 N 1.40318 * 119.99361 * 359.97438 * 22 2 1 24 24 C 1.33879 * 122.76655 * 89.73466 * 23 22 2 25 25 O 1.21233 * 125.38987 * 359.97438 * 24 23 22 26 26 C 1.51315 * 109.21188 * 179.84121 * 24 23 22 27 27 C 1.54231 * 103.55314 * 0.38546 * 26 24 23 28 28 C 1.33884 * 122.76610 * 270.02141 * 23 22 2 29 29 O 1.21231 * 125.39256 * 0.02562 * 28 23 22 30 30 H 1.08998 * 109.47546 * 270.23452 * 1 2 3 31 31 H 1.09001 * 109.47404 * 30.23699 * 1 2 3 32 32 H 1.09000 * 109.47353 * 150.23762 * 1 2 3 33 33 H 1.07997 * 120.00327 * 0.03699 * 3 2 1 34 34 H 0.96999 * 119.99663 * 34.82005 * 5 4 3 35 35 H 0.96997 * 120.00609 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.47804 * 60.00029 * 11 9 8 37 37 H 1.09008 * 109.46500 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47355 * 299.99516 * 11 9 8 39 39 H 0.96998 * 120.00579 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.99729 * 180.29800 * 20 4 3 41 41 H 1.07997 * 119.99685 * 179.97438 * 21 20 4 42 42 H 1.08998 * 110.79257 * 241.77458 * 26 24 23 43 43 H 1.09000 * 110.54687 * 118.87305 * 26 24 23 44 44 H 1.09002 * 110.59855 * 241.26135 * 27 26 24 45 45 H 1.08989 * 110.73658 * 118.36039 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1958 0.0000 4 6 3.5857 1.1957 -0.0058 5 7 4.2863 2.4086 -0.0113 6 6 5.4503 2.5115 -0.6828 7 8 5.9347 1.5306 -1.2134 8 7 6.0771 3.7016 -0.7661 9 6 7.3427 3.8134 -1.4957 10 1 7.9202 2.8985 -1.3636 11 6 7.0564 4.0254 -2.9836 12 6 8.1277 4.9844 -0.9633 13 1 7.7241 5.5855 -0.1619 14 6 9.3583 5.2921 -1.5035 15 7 9.8496 4.5605 -2.4796 16 14 10.3280 6.7483 -0.8487 17 1 10.6104 6.5461 0.5952 18 1 11.6086 6.8646 -1.5915 19 1 9.5362 7.9916 -1.0289 20 6 4.2799 -0.0073 -0.0003 21 6 3.5895 -1.2024 0.0050 22 6 2.2009 -1.2022 0.0050 23 7 1.4992 -2.4173 0.0105 24 6 1.1318 -3.0470 -1.1124 25 8 1.3521 -2.6584 -2.2394 26 6 0.4011 -4.3220 -0.7519 27 6 0.4012 -4.3150 0.7904 28 6 1.1368 -3.0396 1.1392 29 8 1.3621 -2.6437 2.2627 30 1 -0.3634 0.0042 1.0276 31 1 -0.3634 0.8878 -0.5175 32 1 -0.3634 -0.8921 -0.5101 33 1 1.6573 2.1311 0.0006 34 1 3.9336 3.1744 0.4683 35 1 5.6904 4.4842 -0.3431 36 1 6.4788 4.9403 -3.1158 37 1 7.9981 4.1081 -3.5265 38 1 6.4887 3.1785 -3.3687 39 1 10.7152 4.7772 -2.8599 40 1 5.3599 -0.0075 0.0001 41 1 4.1292 -2.1378 0.0088 42 1 0.9339 -5.1939 -1.1317 43 1 -0.6189 -4.3000 -1.1356 44 1 0.9340 -5.1835 1.1778 45 1 -0.6178 -4.2879 1.1762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775620700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:02 Heat of formation + Delta-G solvation = -82.440417 kcal Electronic energy + Delta-G solvation = -29594.250023 eV Core-core repulsion = 25383.306743 eV Total energy + Delta-G solvation = -4210.943281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.23529 -41.63694 -39.85423 -39.66499 -37.26595 -36.81126 -35.93772 -34.51084 -33.73816 -33.57487 -31.08073 -29.53483 -27.91012 -27.35107 -27.12207 -24.55292 -23.72595 -23.26559 -22.62534 -21.58427 -20.79922 -19.91162 -18.91299 -18.66702 -18.12463 -17.76038 -17.36045 -16.92837 -16.63700 -16.31573 -16.06000 -15.90868 -15.33662 -15.28174 -15.08307 -14.94904 -14.73109 -14.54575 -14.45470 -14.29320 -14.08756 -13.81322 -13.48689 -13.35303 -13.04357 -12.99937 -12.87539 -12.74384 -12.57034 -12.28747 -12.16427 -12.08673 -11.75165 -11.60270 -11.26104 -11.14306 -11.07810 -10.91018 -10.61481 -9.94598 -9.86435 -9.14146 -8.18665 -6.36432 -0.02989 0.21428 0.47707 1.44109 1.46771 1.47424 1.54649 1.66153 1.67184 2.04260 2.40753 2.57016 3.11716 3.25008 3.33910 3.35400 3.63617 3.68271 3.69156 4.05766 4.11889 4.18487 4.28382 4.34764 4.59199 4.64111 4.71791 4.74861 4.78034 4.90356 4.91813 4.92454 4.99557 5.06622 5.14536 5.18933 5.26886 5.35352 5.39524 5.56796 5.62263 5.75801 5.80343 5.86188 6.06535 6.19608 6.32397 6.70703 6.76728 7.16544 7.31955 7.60515 8.87676 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002068 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.689965 B =13534.943981 C =13726.362280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.136 4.136 4 C 0.179 3.821 5 N -0.674 5.674 6 C 0.692 3.308 7 O -0.623 6.623 8 N -0.711 5.711 9 C 0.289 3.711 10 H -0.001 1.001 11 C -0.135 4.135 12 C -0.547 4.547 13 H 0.076 0.924 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.975 3.025 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.263 1.263 20 C -0.140 4.140 21 C -0.089 4.089 22 C 0.065 3.935 23 N -0.531 5.531 24 C 0.514 3.486 25 O -0.521 6.521 26 C -0.136 4.136 27 C -0.135 4.135 28 C 0.517 3.483 29 O -0.517 6.517 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.425 0.575 35 H 0.405 0.595 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.148 0.852 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.299 -15.529 8.070 31.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.157 4.157 4 C 0.083 3.917 5 N -0.323 5.323 6 C 0.393 3.607 7 O -0.504 6.504 8 N -0.363 5.363 9 C 0.185 3.815 10 H 0.017 0.983 11 C -0.194 4.194 12 C -0.585 4.585 13 H 0.094 0.906 14 C -0.187 4.187 15 N -0.556 5.556 16 Si 0.800 3.200 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.187 1.187 20 C -0.162 4.162 21 C -0.109 4.109 22 C -0.025 4.025 23 N -0.271 5.271 24 C 0.306 3.694 25 O -0.394 6.394 26 C -0.175 4.175 27 C -0.174 4.174 28 C 0.310 3.690 29 O -0.390 6.390 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.184 0.816 34 H 0.264 0.736 35 H 0.241 0.759 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.172 0.828 44 H 0.166 0.834 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.383 -15.907 7.437 30.865 hybrid contribution 1.280 1.549 0.298 2.031 sum -24.104 -14.358 7.735 29.103 Atomic orbital electron populations 1.20778 0.88114 1.03898 1.03479 1.20041 0.97966 0.90864 0.96800 1.20908 0.90767 0.99357 1.04712 1.17784 0.91279 0.84991 0.97671 1.42491 1.22311 1.13441 1.54074 1.16254 0.80707 0.84372 0.79396 1.90863 1.67670 1.37962 1.53885 1.45446 1.25309 1.08409 1.57181 1.18275 0.78999 0.95786 0.88440 0.98260 1.21929 1.00876 0.97408 0.99138 1.21485 1.03595 1.13491 1.19922 0.90617 1.25821 0.98319 0.99626 0.94900 1.70047 1.19068 1.40426 1.26014 0.85351 0.77433 0.79006 0.78244 1.19607 1.21255 1.18746 1.21143 1.00800 0.91558 1.02669 1.21051 0.93020 0.98278 0.98548 1.17558 0.90476 0.85635 1.08799 1.44644 1.50849 1.20593 1.11022 1.22123 0.77313 0.87270 0.82658 1.90804 1.54752 1.71026 1.22803 1.22628 1.04933 0.93988 0.95942 1.22626 1.04985 0.94134 0.95648 1.22043 0.77284 0.87167 0.82500 1.90777 1.54683 1.70660 1.22849 0.89460 0.88950 0.91998 0.81599 0.73618 0.75935 0.93961 0.91297 0.97241 0.92488 0.86144 0.85405 0.83465 0.82849 0.83384 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.76 71.23 0.70 -1.08 16 2 C -0.05 -1.35 5.89 -19.77 -0.12 -1.47 16 3 C -0.14 -3.39 9.61 22.38 0.22 -3.17 16 4 C 0.18 5.68 6.30 38.13 0.24 5.92 16 5 N -0.67 -20.94 5.35 -317.08 -1.70 -22.63 16 6 C 0.69 29.07 8.37 179.06 1.50 30.57 16 7 O -0.62 -32.10 13.44 -3.98 -0.05 -32.15 16 8 N -0.71 -29.84 5.07 -461.41 -2.34 -32.18 16 9 C 0.29 15.17 2.56 44.24 0.11 15.28 16 10 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 11 C -0.13 -6.98 9.26 71.98 0.67 -6.31 16 12 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 13 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 14 C 0.01 0.73 5.30 84.65 0.45 1.18 16 15 N -0.92 -52.98 11.31 21.45 0.24 -52.74 16 16 Si 0.98 41.98 29.54 68.60 2.03 44.01 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 C -0.14 -5.06 8.69 22.38 0.19 -4.86 16 21 C -0.09 -2.85 9.96 22.37 0.22 -2.62 16 22 C 0.06 1.80 4.77 38.07 0.18 1.98 16 23 N -0.53 -11.02 1.72 -579.57 -1.00 -12.01 16 24 C 0.51 9.34 7.40 87.99 0.65 9.99 16 25 O -0.52 -14.70 17.65 -2.88 -0.05 -14.75 16 26 C -0.14 -0.47 7.03 30.46 0.21 -0.25 16 27 C -0.14 -0.37 7.03 30.46 0.21 -0.16 16 28 C 0.52 8.71 8.04 87.99 0.71 9.41 16 29 O -0.52 -13.10 17.65 -2.88 -0.05 -13.16 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 32 H 0.06 1.00 6.91 -2.39 -0.02 0.98 16 33 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.42 9.39 8.84 -92.71 -0.82 8.57 16 35 H 0.41 13.83 8.56 -92.71 -0.79 13.04 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 3.89 6.06 -2.38 -0.01 3.88 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.12 5.06 6.22 -2.91 -0.02 5.04 16 41 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 42 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.16 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: -1.00 -85.80 383.16 2.90 -82.90 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.55 Total: 26.99 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 6.37 Total: 25.73 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -4.79 Total: -119.56 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -0.16 Total: -60.06 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -85.80 2.90 -82.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775620700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.460 kcal (2) G-P(sol) polarization free energy of solvation -85.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds