Wall clock time and date at job start Wed Apr 1 2020 04:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31134 * 126.55100 * 2 1 4 4 C 1.34492 * 105.61827 * 180.12182 * 3 2 1 5 5 C 1.50694 * 126.29283 * 179.90505 * 4 3 2 6 6 H 1.09001 * 109.54189 * 14.59648 * 5 4 3 7 7 C 1.53100 * 109.50596 * 254.49424 * 5 4 3 8 8 O 1.43014 * 109.25823 * 183.21373 * 7 5 4 9 9 C 1.43011 * 113.73993 * 58.66913 * 8 7 5 10 10 C 1.53102 * 109.25809 * 301.32983 * 9 8 7 11 11 N 1.47012 * 109.50939 * 134.70985 * 5 4 3 12 12 C 1.46904 * 110.99849 * 302.32631 * 11 5 4 13 13 C 1.50703 * 109.47128 * 302.41210 * 12 11 5 14 14 C 1.38294 * 119.92983 * 90.00153 * 13 12 11 15 15 C 1.38096 * 120.06969 * 179.97438 * 14 13 12 16 16 C 1.38887 * 119.92909 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.06604 * 180.02562 * 16 15 14 18 18 C 1.34833 * 117.00531 * 5.54199 * 17 16 15 19 19 H 1.07995 * 119.99432 * 354.93787 * 18 17 16 20 20 C 1.38650 * 120.00178 * 174.66237 * 18 17 16 21 21 N 1.31555 * 119.99962 * 0.27731 * 20 18 17 22 22 Si 1.86799 * 120.00030 * 180.27275 * 20 18 17 23 23 H 1.48501 * 109.47182 * 60.00237 * 22 20 18 24 24 H 1.48505 * 109.47357 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47524 * 300.00296 * 22 20 18 26 26 C 1.38871 * 119.86145 * 0.28182 * 16 15 14 27 27 C 1.38107 * 119.92971 * 359.46603 * 26 16 15 28 28 N 1.29956 * 107.42035 * 359.63745 * 4 3 2 29 29 O 1.21293 * 110.25254 * 0.23001 * 28 4 3 30 30 H 1.09001 * 109.47028 * 180.25476 * 1 2 3 31 31 H 1.08996 * 109.47446 * 300.25313 * 1 2 3 32 32 H 1.09005 * 109.46939 * 60.25793 * 1 2 3 33 33 H 1.08999 * 109.50552 * 63.27778 * 7 5 4 34 34 H 1.08997 * 109.54040 * 303.17126 * 7 5 4 35 35 H 1.09002 * 109.51277 * 181.39699 * 9 8 7 36 36 H 1.08998 * 109.54201 * 61.28684 * 9 8 7 37 37 H 1.08996 * 109.50699 * 296.91029 * 10 9 8 38 38 H 1.09003 * 109.50825 * 176.78444 * 10 9 8 39 39 H 1.08999 * 109.46946 * 182.41329 * 12 11 5 40 40 H 1.08993 * 109.46963 * 62.41391 * 12 11 5 41 41 H 1.08006 * 119.96631 * 0.02562 * 14 13 12 42 42 H 1.08002 * 120.04071 * 180.02562 * 15 14 13 43 43 H 0.97006 * 119.99546 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.03647 * 179.71990 * 26 16 15 45 45 H 1.07999 * 119.96577 * 180.27627 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8112 1.3887 -0.0059 6 1 4.5802 2.4220 0.2532 7 6 5.4466 1.3407 -1.3980 8 8 6.6862 2.0537 -1.3755 9 6 7.6284 1.5407 -0.4298 10 6 7.0150 1.5908 0.9721 11 7 5.7540 0.8351 0.9769 12 6 5.1600 0.8105 2.3203 13 6 4.7437 2.2052 2.7110 14 6 3.4717 2.6559 2.4085 15 6 3.0870 3.9332 2.7656 16 6 3.9789 4.7652 3.4299 17 8 3.6035 6.0211 3.7827 18 6 2.3171 6.3601 3.5629 19 1 1.6583 5.6749 3.0503 20 6 1.8388 7.5859 4.0000 21 7 2.6414 8.4205 4.6243 22 14 0.0547 8.0523 3.7021 23 1 -0.8329 7.0637 4.3656 24 1 -0.2037 9.4037 4.2611 25 1 -0.2178 8.0607 2.2424 26 6 5.2572 4.3116 3.7275 27 6 5.6342 3.0313 3.3723 28 7 3.4645 -0.7242 0.0036 29 8 2.3030 -1.0735 0.0052 30 1 -0.3633 -1.0277 0.0046 31 1 -0.3634 0.5177 0.8876 32 1 -0.3633 0.5098 -0.8923 33 1 4.7743 1.8022 -2.1211 34 1 5.6283 0.3037 -1.6802 35 1 8.5339 2.1470 -0.4526 36 1 7.8743 0.5095 -0.6828 37 1 6.8193 2.6273 1.2469 38 1 7.7073 1.1483 1.6884 39 1 5.8932 0.4366 3.0349 40 1 4.2873 0.1575 2.3198 41 1 2.7782 2.0079 1.8930 42 1 2.0934 4.2845 2.5295 43 1 2.3068 9.2783 4.9297 44 1 5.9545 4.9578 4.2399 45 1 6.6267 2.6764 3.6075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779632637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:22 Heat of formation + Delta-G solvation = 44.363755 kcal Electronic energy + Delta-G solvation = -31078.831117 eV Core-core repulsion = 26873.386478 eV Total energy + Delta-G solvation = -4205.444639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.68186 -40.22039 -38.87918 -37.13390 -36.10220 -35.21062 -33.71400 -32.33299 -31.26601 -30.36869 -30.11160 -28.94001 -27.47117 -25.56340 -25.15034 -23.94926 -23.46436 -22.19214 -21.84341 -20.83688 -19.66099 -18.28409 -18.03064 -17.61283 -16.99370 -16.52803 -16.28960 -15.49006 -15.29870 -15.15277 -14.79299 -14.56717 -14.41752 -14.34114 -13.84360 -13.67795 -13.56001 -13.47707 -13.25413 -12.91677 -12.75097 -12.45587 -12.22866 -12.18271 -11.87459 -11.67928 -11.49992 -11.32676 -11.23418 -11.07743 -10.98799 -10.88710 -10.64349 -10.60697 -10.45851 -10.09323 -9.67341 -9.35354 -8.86186 -8.43094 -8.21047 -7.24479 -6.48422 -4.07192 1.07841 2.10010 2.17021 2.21989 2.73772 3.11024 3.11699 3.14889 3.29702 3.61019 3.93841 3.95656 4.07631 4.52152 4.67176 4.81960 4.89303 4.99008 5.02297 5.04986 5.05574 5.13754 5.20962 5.24007 5.36624 5.38207 5.42386 5.47196 5.63217 5.67359 5.72002 5.75157 5.80171 5.91009 5.95563 5.98239 6.17840 6.36044 6.64644 6.75498 6.82921 6.89080 6.96563 7.02397 7.20498 7.34826 7.40491 7.77486 7.96564 8.13752 8.97006 9.65993 10.69306 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.003701 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.232863 B = 7562.959216 C = 9215.548382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.171 3.829 3 N -0.471 5.471 4 C 0.187 3.813 5 C 0.135 3.865 6 H 0.096 0.904 7 C 0.077 3.923 8 O -0.376 6.376 9 C 0.061 3.939 10 C 0.014 3.986 11 N -0.518 5.518 12 C 0.111 3.889 13 C -0.235 4.235 14 C -0.058 4.058 15 C -0.230 4.230 16 C 0.158 3.842 17 O -0.175 6.175 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.195 4.195 27 C -0.060 4.060 28 N -0.361 5.361 29 O 0.074 5.926 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.271 0.729 44 H 0.116 0.884 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -17.686 -9.820 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.049 4.049 3 N -0.206 5.206 4 C -0.086 4.086 5 C 0.025 3.975 6 H 0.114 0.886 7 C -0.001 4.001 8 O -0.293 6.293 9 C -0.016 4.016 10 C -0.114 4.114 11 N -0.243 5.243 12 C -0.016 4.016 13 C -0.237 4.237 14 C -0.077 4.077 15 C -0.249 4.249 16 C 0.104 3.896 17 O -0.078 6.078 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.215 4.215 27 C -0.079 4.079 28 N -0.067 5.067 29 O 0.014 5.986 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.662 -17.668 -9.868 20.305 hybrid contribution -1.416 0.832 0.444 1.701 sum 0.246 -16.837 -9.424 19.296 Atomic orbital electron populations 1.20390 0.80286 1.05399 1.05885 1.28872 0.98949 0.80788 0.96308 1.71927 1.00121 1.28704 1.19825 1.25272 0.94386 0.87978 1.00980 1.20548 0.85424 0.96524 0.95052 0.88635 1.22593 0.85923 0.97508 0.94075 1.88034 1.24688 1.57008 1.59604 1.22752 0.91876 0.99639 0.87326 1.22877 0.91410 0.98716 0.98362 1.62705 1.03744 1.51711 1.06096 1.20923 0.98940 0.93393 0.88368 1.19850 0.96195 0.97765 1.09884 1.20858 0.94853 0.95336 0.96676 1.21130 1.01454 0.95298 1.07046 1.19419 0.93012 0.85425 0.91755 1.83974 1.29344 1.23014 1.71479 1.21288 0.84079 1.02802 1.38662 0.89104 1.25294 1.00153 0.95038 0.95941 1.70031 1.35625 1.08626 1.35323 0.85784 0.80444 0.78201 0.79045 1.19477 1.20218 1.19411 1.20182 0.95677 0.96829 1.08765 1.20468 0.97678 0.92999 0.96795 1.74696 0.96591 1.15547 1.19893 1.85330 1.11697 1.35927 1.65688 0.88639 0.87723 0.87864 0.88248 0.92028 0.88122 0.92308 0.92006 0.89218 0.90196 0.91590 0.87063 0.85609 0.91916 0.86550 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.17 1.85 8.51 -13.05 -0.11 1.74 16 3 N -0.47 -6.65 9.67 -9.86 -0.10 -6.75 16 4 C 0.19 2.71 4.58 -156.37 -0.72 2.00 16 5 C 0.13 1.98 1.93 -68.75 -0.13 1.85 16 6 H 0.10 1.67 6.22 -51.93 -0.32 1.35 16 7 C 0.08 1.02 6.27 37.21 0.23 1.25 16 8 O -0.38 -5.16 10.83 -35.23 -0.38 -5.54 16 9 C 0.06 0.68 7.01 37.21 0.26 0.94 16 10 C 0.01 0.18 5.12 -3.71 -0.02 0.16 16 11 N -0.52 -7.20 4.73 -229.16 -1.09 -8.29 16 12 C 0.11 1.64 5.22 -4.97 -0.03 1.61 16 13 C -0.23 -4.09 4.02 -104.58 -0.42 -4.51 16 14 C -0.06 -1.13 7.83 -39.61 -0.31 -1.44 16 15 C -0.23 -5.14 9.17 -39.39 -0.36 -5.50 16 16 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 17 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 18 C -0.39 -11.01 9.49 30.88 0.29 -10.71 16 19 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 20 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 21 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.20 -4.15 9.99 -39.40 -0.39 -4.54 16 27 C -0.06 -1.08 8.02 -39.61 -0.32 -1.39 16 28 N -0.36 -5.08 11.93 30.90 0.37 -4.71 16 29 O 0.07 0.89 11.31 18.09 0.20 1.09 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.89 6.33 -51.93 -0.33 0.57 16 38 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 39 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 40 H 0.07 1.04 6.89 -51.93 -0.36 0.68 16 41 H 0.11 2.03 5.05 -52.48 -0.27 1.76 16 42 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 45 H 0.11 1.61 8.03 -52.49 -0.42 1.18 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -33.13 365.49 -7.37 -40.49 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.62 Total: 6.16 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.00 Total: -13.89 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.05 Total: -44.23 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.18 Total: -9.48 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.13 -7.37 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779632637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.858 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds