Wall clock time and date at job start Wed Apr 1 2020 04:06:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.31134 * 126.55100 * 2 1
4 4 C 1.34492 * 105.61827 * 180.12182 * 3 2 1
5 5 C 1.50694 * 126.29283 * 179.90505 * 4 3 2
6 6 H 1.09001 * 109.54189 * 14.59648 * 5 4 3
7 7 C 1.53100 * 109.50596 * 254.49424 * 5 4 3
8 8 O 1.43014 * 109.25823 * 183.21373 * 7 5 4
9 9 C 1.43011 * 113.73993 * 58.66913 * 8 7 5
10 10 C 1.53102 * 109.25809 * 301.32983 * 9 8 7
11 11 N 1.47012 * 109.50939 * 134.70985 * 5 4 3
12 12 C 1.46904 * 110.99849 * 302.32631 * 11 5 4
13 13 C 1.50703 * 109.47128 * 302.41210 * 12 11 5
14 14 C 1.38294 * 119.92983 * 90.00153 * 13 12 11
15 15 C 1.38096 * 120.06969 * 179.97438 * 14 13 12
16 16 C 1.38887 * 119.92909 * 359.97438 * 15 14 13
17 17 O 1.35746 * 120.06604 * 180.02562 * 16 15 14
18 18 C 1.34833 * 117.00531 * 5.54199 * 17 16 15
19 19 H 1.07995 * 119.99432 * 354.93787 * 18 17 16
20 20 C 1.38650 * 120.00178 * 174.66237 * 18 17 16
21 21 N 1.31555 * 119.99962 * 0.27731 * 20 18 17
22 22 Si 1.86799 * 120.00030 * 180.27275 * 20 18 17
23 23 H 1.48501 * 109.47182 * 60.00237 * 22 20 18
24 24 H 1.48505 * 109.47357 * 180.02562 * 22 20 18
25 25 H 1.48497 * 109.47524 * 300.00296 * 22 20 18
26 26 C 1.38871 * 119.86145 * 0.28182 * 16 15 14
27 27 C 1.38107 * 119.92971 * 359.46603 * 26 16 15
28 28 N 1.29956 * 107.42035 * 359.63745 * 4 3 2
29 29 O 1.21293 * 110.25254 * 0.23001 * 28 4 3
30 30 H 1.09001 * 109.47028 * 180.25476 * 1 2 3
31 31 H 1.08996 * 109.47446 * 300.25313 * 1 2 3
32 32 H 1.09005 * 109.46939 * 60.25793 * 1 2 3
33 33 H 1.08999 * 109.50552 * 63.27778 * 7 5 4
34 34 H 1.08997 * 109.54040 * 303.17126 * 7 5 4
35 35 H 1.09002 * 109.51277 * 181.39699 * 9 8 7
36 36 H 1.08998 * 109.54201 * 61.28684 * 9 8 7
37 37 H 1.08996 * 109.50699 * 296.91029 * 10 9 8
38 38 H 1.09003 * 109.50825 * 176.78444 * 10 9 8
39 39 H 1.08999 * 109.46946 * 182.41329 * 12 11 5
40 40 H 1.08993 * 109.46963 * 62.41391 * 12 11 5
41 41 H 1.08006 * 119.96631 * 0.02562 * 14 13 12
42 42 H 1.08002 * 120.04071 * 180.02562 * 15 14 13
43 43 H 0.97006 * 119.99546 * 179.97438 * 21 20 18
44 44 H 1.07995 * 120.03647 * 179.71990 * 26 16 15
45 45 H 1.07999 * 119.96577 * 180.27627 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2880 1.0534 0.0000
4 6 3.5441 0.5729 -0.0028
5 6 4.8112 1.3887 -0.0059
6 1 4.5802 2.4220 0.2532
7 6 5.4466 1.3407 -1.3980
8 8 6.6862 2.0537 -1.3755
9 6 7.6284 1.5407 -0.4298
10 6 7.0150 1.5908 0.9721
11 7 5.7540 0.8351 0.9769
12 6 5.1600 0.8105 2.3203
13 6 4.7437 2.2052 2.7110
14 6 3.4717 2.6559 2.4085
15 6 3.0870 3.9332 2.7656
16 6 3.9789 4.7652 3.4299
17 8 3.6035 6.0211 3.7827
18 6 2.3171 6.3601 3.5629
19 1 1.6583 5.6749 3.0503
20 6 1.8388 7.5859 4.0000
21 7 2.6414 8.4205 4.6243
22 14 0.0547 8.0523 3.7021
23 1 -0.8329 7.0637 4.3656
24 1 -0.2037 9.4037 4.2611
25 1 -0.2178 8.0607 2.2424
26 6 5.2572 4.3116 3.7275
27 6 5.6342 3.0313 3.3723
28 7 3.4645 -0.7242 0.0036
29 8 2.3030 -1.0735 0.0052
30 1 -0.3633 -1.0277 0.0046
31 1 -0.3634 0.5177 0.8876
32 1 -0.3633 0.5098 -0.8923
33 1 4.7743 1.8022 -2.1211
34 1 5.6283 0.3037 -1.6802
35 1 8.5339 2.1470 -0.4526
36 1 7.8743 0.5095 -0.6828
37 1 6.8193 2.6273 1.2469
38 1 7.7073 1.1483 1.6884
39 1 5.8932 0.4366 3.0349
40 1 4.2873 0.1575 2.3198
41 1 2.7782 2.0079 1.8930
42 1 2.0934 4.2845 2.5295
43 1 2.3068 9.2783 4.9297
44 1 5.9545 4.9578 4.2399
45 1 6.6267 2.6764 3.6075
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000779632637.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:06:22
Heat of formation + Delta-G solvation = 44.363755 kcal
Electronic energy + Delta-G solvation = -31078.831117 eV
Core-core repulsion = 26873.386478 eV
Total energy + Delta-G solvation = -4205.444639 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-45.68186 -40.22039 -38.87918 -37.13390 -36.10220 -35.21062 -33.71400 -32.33299
-31.26601 -30.36869 -30.11160 -28.94001 -27.47117 -25.56340 -25.15034 -23.94926
-23.46436 -22.19214 -21.84341 -20.83688 -19.66099 -18.28409 -18.03064 -17.61283
-16.99370 -16.52803 -16.28960 -15.49006 -15.29870 -15.15277 -14.79299 -14.56717
-14.41752 -14.34114 -13.84360 -13.67795 -13.56001 -13.47707 -13.25413 -12.91677
-12.75097 -12.45587 -12.22866 -12.18271 -11.87459 -11.67928 -11.49992 -11.32676
-11.23418 -11.07743 -10.98799 -10.88710 -10.64349 -10.60697 -10.45851 -10.09323
-9.67341 -9.35354 -8.86186 -8.43094 -8.21047 -7.24479 -6.48422 -4.07192
1.07841 2.10010 2.17021 2.21989 2.73772 3.11024 3.11699 3.14889
3.29702 3.61019 3.93841 3.95656 4.07631 4.52152 4.67176 4.81960
4.89303 4.99008 5.02297 5.04986 5.05574 5.13754 5.20962 5.24007
5.36624 5.38207 5.42386 5.47196 5.63217 5.67359 5.72002 5.75157
5.80171 5.91009 5.95563 5.98239 6.17840 6.36044 6.64644 6.75498
6.82921 6.89080 6.96563 7.02397 7.20498 7.34826 7.40491 7.77486
7.96564 8.13752 8.97006 9.65993 10.69306
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010379 B = 0.003701 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2697.232863 B = 7562.959216 C = 9215.548382
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 C 0.171 3.829
3 N -0.471 5.471
4 C 0.187 3.813
5 C 0.135 3.865
6 H 0.096 0.904
7 C 0.077 3.923
8 O -0.376 6.376
9 C 0.061 3.939
10 C 0.014 3.986
11 N -0.518 5.518
12 C 0.111 3.889
13 C -0.235 4.235
14 C -0.058 4.058
15 C -0.230 4.230
16 C 0.158 3.842
17 O -0.175 6.175
18 C -0.392 4.392
19 H 0.092 0.908
20 C 0.040 3.960
21 N -0.862 5.862
22 Si 0.941 3.059
23 H -0.270 1.270
24 H -0.277 1.277
25 H -0.269 1.269
26 C -0.195 4.195
27 C -0.060 4.060
28 N -0.361 5.361
29 O 0.074 5.926
30 H 0.095 0.905
31 H 0.104 0.896
32 H 0.103 0.897
33 H 0.099 0.901
34 H 0.061 0.939
35 H 0.101 0.899
36 H 0.059 0.941
37 H 0.062 0.938
38 H 0.090 0.910
39 H 0.080 0.920
40 H 0.066 0.934
41 H 0.112 0.888
42 H 0.126 0.874
43 H 0.271 0.729
44 H 0.116 0.884
45 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.586 -17.686 -9.820 20.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.049 4.049
3 N -0.206 5.206
4 C -0.086 4.086
5 C 0.025 3.975
6 H 0.114 0.886
7 C -0.001 4.001
8 O -0.293 6.293
9 C -0.016 4.016
10 C -0.114 4.114
11 N -0.243 5.243
12 C -0.016 4.016
13 C -0.237 4.237
14 C -0.077 4.077
15 C -0.249 4.249
16 C 0.104 3.896
17 O -0.078 6.078
18 C -0.468 4.468
19 H 0.109 0.891
20 C -0.164 4.164
21 N -0.496 5.496
22 Si 0.765 3.235
23 H -0.195 1.195
24 H -0.202 1.202
25 H -0.194 1.194
26 C -0.215 4.215
27 C -0.079 4.079
28 N -0.067 5.067
29 O 0.014 5.986
30 H 0.114 0.886
31 H 0.123 0.877
32 H 0.121 0.879
33 H 0.118 0.882
34 H 0.080 0.920
35 H 0.119 0.881
36 H 0.077 0.923
37 H 0.080 0.920
38 H 0.108 0.892
39 H 0.098 0.902
40 H 0.084 0.916
41 H 0.129 0.871
42 H 0.144 0.856
43 H 0.081 0.919
44 H 0.135 0.865
45 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 1.662 -17.668 -9.868 20.305
hybrid contribution -1.416 0.832 0.444 1.701
sum 0.246 -16.837 -9.424 19.296
Atomic orbital electron populations
1.20390 0.80286 1.05399 1.05885 1.28872 0.98949 0.80788 0.96308
1.71927 1.00121 1.28704 1.19825 1.25272 0.94386 0.87978 1.00980
1.20548 0.85424 0.96524 0.95052 0.88635 1.22593 0.85923 0.97508
0.94075 1.88034 1.24688 1.57008 1.59604 1.22752 0.91876 0.99639
0.87326 1.22877 0.91410 0.98716 0.98362 1.62705 1.03744 1.51711
1.06096 1.20923 0.98940 0.93393 0.88368 1.19850 0.96195 0.97765
1.09884 1.20858 0.94853 0.95336 0.96676 1.21130 1.01454 0.95298
1.07046 1.19419 0.93012 0.85425 0.91755 1.83974 1.29344 1.23014
1.71479 1.21288 0.84079 1.02802 1.38662 0.89104 1.25294 1.00153
0.95038 0.95941 1.70031 1.35625 1.08626 1.35323 0.85784 0.80444
0.78201 0.79045 1.19477 1.20218 1.19411 1.20182 0.95677 0.96829
1.08765 1.20468 0.97678 0.92999 0.96795 1.74696 0.96591 1.15547
1.19893 1.85330 1.11697 1.35927 1.65688 0.88639 0.87723 0.87864
0.88248 0.92028 0.88122 0.92308 0.92006 0.89218 0.90196 0.91590
0.87063 0.85609 0.91916 0.86550 0.87322
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16
2 C 0.17 1.85 8.51 -13.05 -0.11 1.74 16
3 N -0.47 -6.65 9.67 -9.86 -0.10 -6.75 16
4 C 0.19 2.71 4.58 -156.37 -0.72 2.00 16
5 C 0.13 1.98 1.93 -68.75 -0.13 1.85 16
6 H 0.10 1.67 6.22 -51.93 -0.32 1.35 16
7 C 0.08 1.02 6.27 37.21 0.23 1.25 16
8 O -0.38 -5.16 10.83 -35.23 -0.38 -5.54 16
9 C 0.06 0.68 7.01 37.21 0.26 0.94 16
10 C 0.01 0.18 5.12 -3.71 -0.02 0.16 16
11 N -0.52 -7.20 4.73 -229.16 -1.09 -8.29 16
12 C 0.11 1.64 5.22 -4.97 -0.03 1.61 16
13 C -0.23 -4.09 4.02 -104.58 -0.42 -4.51 16
14 C -0.06 -1.13 7.83 -39.61 -0.31 -1.44 16
15 C -0.23 -5.14 9.17 -39.39 -0.36 -5.50 16
16 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16
17 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16
18 C -0.39 -11.01 9.49 30.88 0.29 -10.71 16
19 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16
20 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16
21 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16
22 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16
23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16
24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16
25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
26 C -0.20 -4.15 9.99 -39.40 -0.39 -4.54 16
27 C -0.06 -1.08 8.02 -39.61 -0.32 -1.39 16
28 N -0.36 -5.08 11.93 30.90 0.37 -4.71 16
29 O 0.07 0.89 11.31 18.09 0.20 1.09 16
30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16
31 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16
32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16
34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16
36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.06 0.89 6.33 -51.93 -0.33 0.57 16
38 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16
39 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16
40 H 0.07 1.04 6.89 -51.93 -0.36 0.68 16
41 H 0.11 2.03 5.05 -52.48 -0.27 1.76 16
42 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16
43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16
44 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16
45 H 0.11 1.61 8.03 -52.49 -0.42 1.18 16
LS Contribution 365.49 15.07 5.51 5.51
Total: -1.00 -33.13 365.49 -7.37 -40.49
By element:
Atomic # 1 Polarization: 11.78 SS G_CDS: -5.62 Total: 6.16 kcal
Atomic # 6 Polarization: -11.90 SS G_CDS: -2.00 Total: -13.89 kcal
Atomic # 7 Polarization: -44.18 SS G_CDS: -0.05 Total: -44.23 kcal
Atomic # 8 Polarization: -9.31 SS G_CDS: -0.18 Total: -9.48 kcal
Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -33.13 -7.37 -40.49 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000779632637.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.858 kcal
(2) G-P(sol) polarization free energy of solvation -33.129 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.729 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds