Wall clock time and date at job start Wed Apr 1 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31134 * 126.55100 * 2 1 4 4 C 1.34492 * 105.61827 * 180.12182 * 3 2 1 5 5 C 1.50694 * 126.29283 * 179.90505 * 4 3 2 6 6 H 1.09001 * 109.54189 * 14.59648 * 5 4 3 7 7 C 1.53100 * 109.50596 * 254.49424 * 5 4 3 8 8 O 1.43014 * 109.25823 * 183.21373 * 7 5 4 9 9 C 1.43011 * 113.73993 * 58.66913 * 8 7 5 10 10 C 1.53102 * 109.25809 * 301.32983 * 9 8 7 11 11 N 1.47012 * 109.50939 * 134.70985 * 5 4 3 12 12 C 1.46904 * 110.99849 * 302.32631 * 11 5 4 13 13 C 1.50703 * 109.47128 * 302.41210 * 12 11 5 14 14 C 1.38294 * 119.92983 * 90.00153 * 13 12 11 15 15 C 1.38096 * 120.06969 * 179.97438 * 14 13 12 16 16 C 1.38887 * 119.92909 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.06604 * 180.02562 * 16 15 14 18 18 C 1.34833 * 117.00531 * 5.54199 * 17 16 15 19 19 H 1.07995 * 119.99432 * 354.93787 * 18 17 16 20 20 C 1.38650 * 120.00178 * 174.66237 * 18 17 16 21 21 N 1.31555 * 119.99962 * 0.27731 * 20 18 17 22 22 Si 1.86799 * 120.00030 * 180.27275 * 20 18 17 23 23 H 1.48501 * 109.47182 * 60.00237 * 22 20 18 24 24 H 1.48505 * 109.47357 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47524 * 300.00296 * 22 20 18 26 26 C 1.38871 * 119.86145 * 0.28182 * 16 15 14 27 27 C 1.38107 * 119.92971 * 359.46603 * 26 16 15 28 28 N 1.29956 * 107.42035 * 359.63745 * 4 3 2 29 29 O 1.21293 * 110.25254 * 0.23001 * 28 4 3 30 30 H 1.09001 * 109.47028 * 180.25476 * 1 2 3 31 31 H 1.08996 * 109.47446 * 300.25313 * 1 2 3 32 32 H 1.09005 * 109.46939 * 60.25793 * 1 2 3 33 33 H 1.08999 * 109.50552 * 63.27778 * 7 5 4 34 34 H 1.08997 * 109.54040 * 303.17126 * 7 5 4 35 35 H 1.09002 * 109.51277 * 181.39699 * 9 8 7 36 36 H 1.08998 * 109.54201 * 61.28684 * 9 8 7 37 37 H 1.08996 * 109.50699 * 296.91029 * 10 9 8 38 38 H 1.09003 * 109.50825 * 176.78444 * 10 9 8 39 39 H 1.08999 * 109.46946 * 182.41329 * 12 11 5 40 40 H 1.08993 * 109.46963 * 62.41391 * 12 11 5 41 41 H 1.08006 * 119.96631 * 0.02562 * 14 13 12 42 42 H 1.08002 * 120.04071 * 180.02562 * 15 14 13 43 43 H 0.97006 * 119.99546 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.03647 * 179.71990 * 26 16 15 45 45 H 1.07999 * 119.96577 * 180.27627 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8112 1.3887 -0.0059 6 1 4.5802 2.4220 0.2532 7 6 5.4466 1.3407 -1.3980 8 8 6.6862 2.0537 -1.3755 9 6 7.6284 1.5407 -0.4298 10 6 7.0150 1.5908 0.9721 11 7 5.7540 0.8351 0.9769 12 6 5.1600 0.8105 2.3203 13 6 4.7437 2.2052 2.7110 14 6 3.4717 2.6559 2.4085 15 6 3.0870 3.9332 2.7656 16 6 3.9789 4.7652 3.4299 17 8 3.6035 6.0211 3.7827 18 6 2.3171 6.3601 3.5629 19 1 1.6583 5.6749 3.0503 20 6 1.8388 7.5859 4.0000 21 7 2.6414 8.4205 4.6243 22 14 0.0547 8.0523 3.7021 23 1 -0.8329 7.0637 4.3656 24 1 -0.2037 9.4037 4.2611 25 1 -0.2178 8.0607 2.2424 26 6 5.2572 4.3116 3.7275 27 6 5.6342 3.0313 3.3723 28 7 3.4645 -0.7242 0.0036 29 8 2.3030 -1.0735 0.0052 30 1 -0.3633 -1.0277 0.0046 31 1 -0.3634 0.5177 0.8876 32 1 -0.3633 0.5098 -0.8923 33 1 4.7743 1.8022 -2.1211 34 1 5.6283 0.3037 -1.6802 35 1 8.5339 2.1470 -0.4526 36 1 7.8743 0.5095 -0.6828 37 1 6.8193 2.6273 1.2469 38 1 7.7073 1.1483 1.6884 39 1 5.8932 0.4366 3.0349 40 1 4.2873 0.1575 2.3198 41 1 2.7782 2.0079 1.8930 42 1 2.0934 4.2845 2.5295 43 1 2.3068 9.2783 4.9297 44 1 5.9545 4.9578 4.2399 45 1 6.6267 2.6764 3.6075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779632637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:21 Heat of formation + Delta-G solvation = 18.863142 kcal Electronic energy + Delta-G solvation = -31079.936907 eV Core-core repulsion = 26873.386478 eV Total energy + Delta-G solvation = -4206.550429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.66849 -41.48477 -40.48846 -38.64692 -37.22980 -36.43950 -34.65267 -34.30494 -32.30059 -31.87895 -31.63297 -29.66104 -28.83730 -27.40700 -26.27915 -25.24123 -24.51773 -23.58602 -23.03388 -22.38454 -20.79048 -19.90506 -19.30119 -18.87245 -18.57805 -17.61239 -17.36077 -16.63315 -16.56753 -16.38330 -16.19044 -16.16175 -15.81371 -15.55112 -15.41053 -15.16724 -14.73498 -14.47009 -14.30142 -14.17235 -14.02181 -13.69295 -13.62204 -13.26038 -13.03176 -13.00536 -12.90503 -12.67377 -12.49271 -12.49024 -12.31800 -12.19859 -12.15776 -12.03426 -11.71051 -11.22402 -11.04926 -10.82442 -10.67055 -9.85537 -9.62698 -9.01863 -8.50966 -6.19723 0.16282 0.50326 0.54510 1.10404 1.32359 1.43025 1.48964 1.92849 2.15077 2.31756 2.53390 2.77873 2.95455 3.08914 3.18055 3.44041 3.62029 3.79566 3.84153 3.91105 4.03313 4.05686 4.09911 4.19806 4.29371 4.39629 4.48497 4.50636 4.53168 4.59420 4.63965 4.69202 4.70426 4.72307 4.84048 4.95107 4.97742 5.01212 5.07978 5.13380 5.19585 5.45490 5.55815 5.63960 5.71273 5.82566 5.97596 6.00651 6.11213 6.93178 7.18414 7.71258 8.71600 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.003701 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.232863 B = 7562.959216 C = 9215.548382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.187 3.813 3 N -0.511 5.511 4 C 0.176 3.824 5 C 0.138 3.862 6 H 0.061 0.939 7 C 0.082 3.918 8 O -0.394 6.394 9 C 0.058 3.942 10 C 0.011 3.989 11 N -0.511 5.511 12 C 0.115 3.885 13 C -0.208 4.208 14 C -0.058 4.058 15 C -0.239 4.239 16 C 0.121 3.879 17 O -0.228 6.228 18 C -0.416 4.416 19 H 0.098 0.902 20 C -0.019 4.019 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.256 1.256 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.204 4.204 27 C -0.047 4.047 28 N -0.373 5.373 29 O 0.079 5.921 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.274 0.726 44 H 0.117 0.883 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -20.796 -10.725 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.032 4.032 3 N -0.246 5.246 4 C -0.097 4.097 5 C 0.027 3.973 6 H 0.079 0.921 7 C 0.004 3.996 8 O -0.312 6.312 9 C -0.018 4.018 10 C -0.116 4.116 11 N -0.235 5.235 12 C -0.012 4.012 13 C -0.210 4.210 14 C -0.077 4.077 15 C -0.258 4.258 16 C 0.070 3.930 17 O -0.134 6.134 18 C -0.492 4.492 19 H 0.115 0.885 20 C -0.217 4.217 21 N -0.555 5.555 22 Si 0.836 3.164 23 H -0.180 1.180 24 H -0.193 1.193 25 H -0.182 1.182 26 C -0.223 4.223 27 C -0.065 4.065 28 N -0.080 5.080 29 O 0.018 5.982 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.131 0.869 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.573 -20.835 -10.794 23.518 hybrid contribution -1.237 1.462 0.613 2.010 sum 0.336 -19.374 -10.182 21.889 Atomic orbital electron populations 1.20755 0.76726 1.07804 1.06709 1.29784 1.00348 0.79616 0.93472 1.71926 1.00558 1.30274 1.21872 1.25221 0.94476 0.88247 1.01765 1.20441 0.86065 0.94713 0.96079 0.92073 1.22565 0.85897 0.97886 0.93256 1.88016 1.25116 1.57692 1.60420 1.22966 0.91852 1.00978 0.86005 1.23035 0.91146 0.97374 1.00069 1.62750 1.03965 1.51692 1.05079 1.20983 0.99725 0.90922 0.89577 1.20322 0.94927 0.99121 1.06636 1.21045 0.96170 0.94191 0.96257 1.21145 1.00849 0.96394 1.07448 1.19943 0.94746 0.85105 0.93242 1.83939 1.29876 1.25366 1.74205 1.21742 0.84518 1.03607 1.39360 0.88490 1.26586 1.05308 0.94508 0.95334 1.70173 1.38207 1.09422 1.37736 0.84678 0.73994 0.78233 0.79515 1.18041 1.19329 1.18211 1.20468 0.94600 0.98368 1.08879 1.20876 0.99414 0.91220 0.95022 1.74659 0.97668 1.15209 1.20445 1.85302 1.11315 1.36063 1.65555 0.85505 0.87223 0.86328 0.88111 0.91215 0.85987 0.90820 0.94260 0.86298 0.87405 0.92144 0.85787 0.86863 0.91705 0.86465 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.19 3.70 8.51 88.38 0.75 4.45 16 3 N -0.51 -14.00 9.67 -303.17 -2.93 -16.94 16 4 C 0.18 4.90 4.58 138.46 0.63 5.53 16 5 C 0.14 3.90 1.93 44.18 0.09 3.99 16 6 H 0.06 2.16 6.22 -2.39 -0.01 2.14 16 7 C 0.08 2.07 6.27 72.02 0.45 2.52 16 8 O -0.39 -10.24 10.83 -148.98 -1.61 -11.86 16 9 C 0.06 1.14 7.01 72.02 0.50 1.64 16 10 C 0.01 0.24 5.12 86.32 0.44 0.68 16 11 N -0.51 -12.87 4.73 -878.93 -4.16 -17.03 16 12 C 0.12 3.06 5.22 85.56 0.45 3.51 16 13 C -0.21 -6.89 4.02 -19.84 -0.08 -6.97 16 14 C -0.06 -2.23 7.83 22.25 0.17 -2.05 16 15 C -0.24 -11.10 9.17 22.39 0.21 -10.89 16 16 C 0.12 6.19 6.65 22.58 0.15 6.34 16 17 O -0.23 -13.97 9.76 -22.72 -0.22 -14.19 16 18 C -0.42 -24.73 9.49 67.92 0.64 -24.08 16 19 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.11 5.49 84.83 0.47 -0.65 16 21 N -0.92 -56.62 13.67 21.61 0.30 -56.33 16 22 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 26 C -0.20 -8.79 9.99 22.39 0.22 -8.57 16 27 C -0.05 -1.58 8.02 22.25 0.18 -1.40 16 28 N -0.37 -9.84 11.93 -60.31 -0.72 -10.56 16 29 O 0.08 1.72 11.31 74.81 0.85 2.57 16 30 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.04 6.33 -2.39 -0.02 1.03 16 38 H 0.12 1.90 8.12 -2.39 -0.02 1.88 16 39 H 0.11 2.35 8.05 -2.39 -0.02 2.33 16 40 H 0.06 1.73 6.89 -2.39 -0.02 1.72 16 41 H 0.12 4.48 5.05 -2.91 -0.01 4.47 16 42 H 0.11 5.43 5.64 -2.91 -0.02 5.42 16 43 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 44 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 45 H 0.15 3.84 8.03 -2.91 -0.02 3.82 16 Total: -1.00 -77.96 365.49 0.58 -77.38 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.04 Total: 27.56 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 6.03 Total: -25.74 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -7.52 Total: -100.86 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.99 Total: -23.48 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -77.96 0.58 -77.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779632637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.243 kcal (2) G-P(sol) polarization free energy of solvation -77.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds